Spg034667 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034667
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold7: 44630635 .. 44631937 (-)
RNA-Seq ExpressionSpg034667
SyntenySpg034667
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAACTCGCAAAACCTCTCCATTGCCGGTTACGCAGACGATGCATCTCCCTCATCGCCGGAGGTGGAAGGTCCTCACCATGACACCATTTCCTCCTCTGACGAGGAAAAGGATAACCAAGCTCAAGGTGACCTCATGGAAATAGAAAGACCCGAGGTCATCGATGTTGAGCAAACCACTGAACCGTCCACCTCCACAACCAAACCCACGGAGGTGCTCGACATTGTGCCGTTGGACACCCACACCTTCACCATCCAACCCGTAACCCTCCAACCTGCCCAAAACACCTTCGCCCCACGAAACCTAACTCCATTTCCATCCACTTTCCCTTCTGTCCTCCTTCTTCCACCTCCCGACTCTTCAGCTACCCTCGCATCAAACACCACCCCTTCATCTTCCTCCACCCCCGCAACGAATCTCTCCAGCCATCCAACTCCACGCAACCCACTTCACCGCAGTTTTCTGAGCAGGAAGTGGCCGCATGGAACTCCCTGATGGGAGAGTTGGGCGCAGAAGGCGACGCAATTCTCTAGAGAGAAGAACAAGAAAAAGCTGCGGCAGAAGAAACTGCCCGCAAGGCCGCCGCAGAAGAAGAAGCGGCCAGAGAAAGAGAGCACGCCAGCAAGTTGGCGCAAGACCAAATTGCCGTAGAGGTTGCCGCAGCAAATCTAGCCATCATTGCGGCAGCTCTGGACTCAGAGTCCACAGATTCGGAGGATGAACTACCCCTGACCCATCGCCGCAACATCCAACCAACAGGGGTGACCATCCAAAAGCCATCCGAGAAACCTGCGCTAGGCTCGAGCAAGAAACGAAAAGGGGCGCCCACCGCATCCAAAGGTAAAGGCAAAGAAAAAGTGGGCGAGGACAAGGGCAAATTCCAAGAGGAAAGGGGGTTCAGTTGCACGCTACCACAAACAATGACGGATCAGATTTCCCAACGCAGATGGGAGACAGCTGCGAGAACTTCCCCGACTTCGCTCCTGCGTTAGTCCACGACTTCTACCGAGCGCAGTGGCAGGAAGAAATTAATGAAATAGTGATGCGTGGCCACACAGTAGCCTTCTCCTCTGCGTGCATCAACTCCGTGTACGAGCTGCCAGACATCCCTTACACAGAAGGGAATGCGCTACTGAACTGCCTGGACGATGACTTCCTGAACGTAGTGCTGCTTGTGGTAGCCAGACCTGGAGTCAAGTGGGACGGCCATGGAGCTGCAAGGACCCTGAAGTCGCAGCTATTGGACTTCGACATGCTGGATGCACTGGGTGAAGAACCGCATCATGCCTACAACGCATGA

mRNA sequence

ATGTCCAACTCGCAAAACCTCTCCATTGCCGGTTACGCAGACGATGCATCTCCCTCATCGCCGGAGGTGGAAGGTCCTCACCATGACACCATTTCCTCCTCTGACGAGGAAAAGGATAACCAAGCTCAAGGTGACCTCATGGAAATAGAAAGACCCGAGGTCATCGATGTTGAGCAAACCACTGAACCGTCCACCTCCACAACCAAACCCACGGAGAGAGAAGAACAAGAAAAAGCTGCGGCAGAAGAAACTGCCCGCAAGGCCGCCGCAGAAGAAGAAGCGGCCAGAGAAAGAGAGCACGCCAGCAAGTTGGCGCAAGACCAAATTGCCGTAGAGGTTGCCGCAGCAAATCTAGCCATCATTGCGGCAGCTCTGGACTCAGAGTCCACAGATTCGGAGGATGAACTACCCCTGACCCATCGCCGCAACATCCAACCAACAGGGGTGACCATCCAAAAGCCATCCGAGAAACCTGCGCTAGGCTCGAGCAAGAAACGAAAAGGGGCGCCCACCGCATCCAAAGATTTCCCAACGCAGATGGGAGACAGCTGCGAGAACTTCCCCGACTTCGCTCCTGCGTTAGTCCACGACTTCTACCGAGCGCAGTGGCAGGAAGAAATTAATGAAATAGTGATGCGTGGCCACACAGTAGCCTTCTCCTCTGCGTGCATCAACTCCGTGTACGAGCTGCCAGACATCCCTTACACAGAAGGGAATGCGCTACTGAACTGCCTGGACGATGACTTCCTGAACGTAGTGCTGCTTGTGGTAGCCAGACCTGGAGTCAAGTGGGACGGCCATGGAGCTGCAAGGACCCTGAAGTCGCAGCTATTGGACTTCGACATGCTGGATGCACTGGGTGAAGAACCGCATCATGCCTACAACGCATGA

Coding sequence (CDS)

ATGTCCAACTCGCAAAACCTCTCCATTGCCGGTTACGCAGACGATGCATCTCCCTCATCGCCGGAGGTGGAAGGTCCTCACCATGACACCATTTCCTCCTCTGACGAGGAAAAGGATAACCAAGCTCAAGGTGACCTCATGGAAATAGAAAGACCCGAGGTCATCGATGTTGAGCAAACCACTGAACCGTCCACCTCCACAACCAAACCCACGGAGAGAGAAGAACAAGAAAAAGCTGCGGCAGAAGAAACTGCCCGCAAGGCCGCCGCAGAAGAAGAAGCGGCCAGAGAAAGAGAGCACGCCAGCAAGTTGGCGCAAGACCAAATTGCCGTAGAGGTTGCCGCAGCAAATCTAGCCATCATTGCGGCAGCTCTGGACTCAGAGTCCACAGATTCGGAGGATGAACTACCCCTGACCCATCGCCGCAACATCCAACCAACAGGGGTGACCATCCAAAAGCCATCCGAGAAACCTGCGCTAGGCTCGAGCAAGAAACGAAAAGGGGCGCCCACCGCATCCAAAGATTTCCCAACGCAGATGGGAGACAGCTGCGAGAACTTCCCCGACTTCGCTCCTGCGTTAGTCCACGACTTCTACCGAGCGCAGTGGCAGGAAGAAATTAATGAAATAGTGATGCGTGGCCACACAGTAGCCTTCTCCTCTGCGTGCATCAACTCCGTGTACGAGCTGCCAGACATCCCTTACACAGAAGGGAATGCGCTACTGAACTGCCTGGACGATGACTTCCTGAACGTAGTGCTGCTTGTGGTAGCCAGACCTGGAGTCAAGTGGGACGGCCATGGAGCTGCAAGGACCCTGAAGTCGCAGCTATTGGACTTCGACATGCTGGATGCACTGGGTGAAGAACCGCATCATGCCTACAACGCATGA

Protein sequence

MSNSQNLSIAGYADDASPSSPEVEGPHHDTISSSDEEKDNQAQGDLMEIERPEVIDVEQTTEPSTSTTKPTEREEQEKAAAEETARKAAAEEEAAREREHASKLAQDQIAVEVAAANLAIIAAALDSESTDSEDELPLTHRRNIQPTGVTIQKPSEKPALGSSKKRKGAPTASKDFPTQMGDSCENFPDFAPALVHDFYRAQWQEEINEIVMRGHTVAFSSACINSVYELPDIPYTEGNALLNCLDDDFLNVVLLVVARPGVKWDGHGAARTLKSQLLDFDMLDALGEEPHHAYNA
Homology
[Close]
BLAST of Spg034667 vs. ExPASy TrEMBL
Match: A0A5J5SYF7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G128000v1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-04
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 194 LVHDFYRAQWQEEINEIVMRGHTVAFSSACINSVYELPDIPYTEGNALLNCLDDDFLNVV 253
           LV +FY +   ++  E+++R   V  +S  IN ++ LPD+   E   ++N ++ DFL  V
Sbjct: 79  LVQEFYASLTMQDAIEVIVRKKKVPLTSKSINDLFNLPDVEEDEYYPMMNNINWDFLQQV 138

Query: 254 LLVVARPGVKW 265
           L VV  PG +W
Sbjct: 139 LDVVTNPGSQW 149

[Close]
BLAST of Spg034667 vs. ExPASy TrEMBL
Match: A0A5D2FHZ7 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A08G093000v1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-04
Identity = 26/81 (32.10%), Postives = 43/81 (53.09%), Query Frame = 0 

Query: 184 CENFPDFAPALVHDFYRAQWQEEINEIVMRGHTVAFSSACINSVYELPDIPYTEGNALLN 243
           C+N       L+ +FY +   ++ N+++ R   V F+S  IN ++ LPD    E   ++N
Sbjct: 67  CDNHSHPDDELLQEFYASLTTQDANKVINRKKKVPFTSMSINDLFNLPDAEEDEHYPMMN 126

Query: 244 CLDDDFLNVVLLVVARPGVKW 265
            ++ DFL  VL VV   G +W
Sbjct: 127 NINWDFLQQVLDVVTNSGSQW 147

The following BLAST results are available for this feature:
BLAST of Spg034667 vs.
Match NameE-valueIdentityDescription
BLAST of Spg034667 vs.
Match NameE-valueIdentityDescription
BLAST of Spg034667 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5J5SYF77.7e-0435.21Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G128000v1 PE... [more]
A0A5D2FHZ77.7e-0432.10Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A08G093000v1 PE=... [more]
BLAST of Spg034667 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034667.1Spg034667.1mRNA