Spg034623 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034623
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	scaffold4: 13539469 .. 13543099 (+)
RNA-Seq Expression	Spg034623
Synteny	Spg034623

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGCATTAATCTGACAAGAGGTTTAACAGCGTGCACGAACAACGTCGCAACCAGCAGCCTCCGAGCGCGCCAGCTACCTGCTCCGCCTTGTATAGTGCCCATCTGTAGCATGCTTCATCCGGAAACTAACGCCCCACACTGCCCTCTACTTAGCGCACCTTGCTCTGCACACAGTGATTGTAGCAAGCCTCGCGCAGTGCTCACCCACCCAGCGTGCTCGTCTTCCTAGGACGCCTATGAACCTCTGCCCACACGCATGCATTTTTCCCTATTTGGCAAATTCCCTGTCTACTACACATCTACTTTCCTTATTTGCCTCCTTTTTTTATTTTCTTATTTTGGAATGTAATTTTCGTCCTTAGGGTATTCTTTTTAGATTTTTTTACCAAATCTTTTGGGATATTTTATGTAGTCCTTTTATTTTCCAAATTAAGTTAGAATATTTTTTATTCCTTAATTGTATTGGAATTTTATTTTATTTTATTCTAGGGGTTTTTTTCGTACATCAACATTTGGGGGTGGATAATTTCAAACGTCTGACCTCTTGGTCAAAGATACATGTCAATTATTGCTGAGCTATGCTCGCTTTGACTATTCTAGGGTTAGTTTGTTGATATAACCCATAGAATATTGCGATTTGTTATGGCTGAATTTATCTGATTGTGTCCTGAAGTAGAAAGAATAGTGTGGTATTTAGTTGGTTCCACATTCAACTATCTTTATTTAGGTTGTGGTTGTGTATTGAGCATGAATTTGAATAAAGCAAGTGCAATTAAATGCAGATTTTGTGAGAAAATGTTCTAATTTACTAACTTTGTTGCAGCTCACATTTTAAGTGTGGCGATTTCAAGTGACCTCATGTTGTGACGATTCTCACCAAACATAAGGAAAAAGAATCTTGCAAATCATGAGAAAAAGATTGAGGAAATTGTCCCTGAGGGGTTTTTTTTTTTTTTTTTTTGAATGTGACACATGTTAAGAGAGTTCATTAATGAAGTTAGTTTGTTTTCTCAACTCTATCGGTTTTATTCTTTTATTGTTCAGTTGTGATTCTATTTAATTATCTTGTACTCACAGAACGTGCTTATATATATATGAAAGCCTTTACCTTTGTTCACATTGATGAGAAGAATATATTTTTTGTGGTCTTTTTACTTCGTATTAGAAAGTTTTAGATGGTATCAAAGCATTGTAGTTCTAATGACCATTACGATATGATAATTTTTTTTTCTCTTTCACGATGAGTTCCTCTATTTCTGAGAGAGATTCTTTAGAAATTATCGCTTCACAAGTTTCACAAATTATCATCCTAGAAGCAAGATTTCAACGCCGAAATTAGATGAGGTAAATTACCTTATGTGGAAATTATAGGTTTTGATTACTCTCAGAGGTCATGACTTGCAGAAATACATCAATTGTAATTACGAAATATCTCAAAAAATAATTTCTTAATTCCAGTAATGAATTTTCTTCTGCAAAAATCTCCAATCCATAATATGAGTATTGGATTCGACAAGACAATGTAATTACTACATGGTTTCTTGGTTTGATGTCAATAGTTGTTGAATTGCTCGATTGTAAGATTTATTGAGAGGTATGGAATACCTTGCCCTATCAATTTATCATCCTAAAGACTTGCCCTCTCAATCCGAACATTCCTTCTTGTCGTTCTCAACCAGTCCAAAATCCAAACCCTAATCAGTATGCTCCTACAAATCCCTCGGTTACTGCTAGTTTTCCTTATCCTCCGACGCCACAATTTGGCTTACCTGGCCTTCTACTCTGCATTCAATCTCGCTGCCCCTGTATATCCCTCCCCTCAACCCTCAATATCTCCCTATCCGACCTTAACCCCGCCCCTTAATATAAAAGCTCACTGACTCCAATTGCCTCTTATGGAAGAATCAGCTACTAAATCACATCATTGTGTTTGATATGGAAAGTTTCATTGACGATATCCCTGCTCTTGTGAAGTTTTTGGATGTTGCTCAAACTCAGGTAAGTCCCCATTTTCTGGTTTGGCAAAAATACAATCGAACCCTAATGAGCTTGATATATTCCTCCCTGAATGAAGATAAACTAGGTGAGACAATTGGTTGTTCCTTTGCTTATAACATTTGGGAACATCTTCGTGTGGTCTATGAGTCATCTTCTACGGCTAGGATTATGAGTTTACGTTCTCAATTACAGAAAATTAGGAAAGATGGTTTGTTGGTTATTGGGCTCCTAGAGTGAGTAAAAATAAGATGTAAATAGACTCTAGAACTCTGTGCAAGTATACACAATCCGCAGCAAGTAATAAGTATTTATCGAATCCAAGGTCTGAATTAGCTCTCACTTTATCTATTTTGTATAACTTTTCAATGGTTTCAAAGGTGGTTAAAATGATTGATTTTTATAGAATGTTGAAGCAAAAGAAATGACAGAACAGAAAGTAAACAGATTAGAAACAGGTGCTGGTCAGGATTTAGTAATTGTTTTAAAAGATACTCTAGCAATATTATTGATCAGGCAAAACTCTTGCAGTCTTATTAGCAGATTCCTCTCGGAACTCCGGATTTTTTTGGAATGTGTTTCAACTCCAATGACGCACTACCGATCAAGCACTAGGCAACTGGCTATGCCTAGCTCAGTCACTGACGTTCACCAATACACAATGATCTAGTGTGATTAAATGCCACACACTCTCCAAATCATCCCTGAAACTAGGAAGTGATATTCATATCGGCTGGCCAAGCGGGCACAAAATGTAAATGAGCACAACAAATAATCAAGATGCATCAAATCAACATATATTGCAAAGAGATTAAGCACGACAATTACATATCTCCTAACCAACACCTAAAGTTACTTAGTTCATAAAGTGCATAGTAACACACGTTACAATCTGAGTAAGTGCATCCATAATTACAAAATAATACAAGAAAAATACTAATTCCCTTGATCAACTTCGTAATTGATGGTCTTCTTGTAGGTCTCCAATATTTCTCCTCTATTCGGCTCCCAATAATGGAAATGAGAAATGATCTCTTCCCCAAGAGTGGAATGTCTTTGACTTGGGCGACTCTTTCCTTTTATAGAATGAAGACAAGCTTAAATTAAGTTGACCTAGACACGTGGATGGCTCTCCTTGCTCCTTAAATCCGAGAATAACTTAACTAATTTCAGTTCATTAAATTGGCTAACGAGCTGTGACGTGGCAGTTTTGCTCCTTGCTTTGTTGCAGCACAAAATTTGCTCCCTCAAGTCGTTCAGCAATATATTCTGCCCAAAATAACTTCCAAAGCATCCATTCTTCCAAATGGGTTAAAACATATAATATATATCTAAAAACAACCCTATTTAGCACAAAAAACACACAAATCCCTATAGAAATAAGGCCTAAATAACTCCCTTTCGGAGAGTTATCATTGGTCTCTCAATACCTTGCTCAAATTAAGGATGTAGCAGACAAGTTCTCAGCCATTGGTGAACCCTTGTCCTATGAAGATCATTTGGGTTACATTCTAGAGGGCCTTGGCACTGAATATAACCCCTTTGCTACCTCTATCCAAAATCGAACCAATCGTCATTCTCTTGCTGATGTCCGTAGCCTATTCCTAGTCTATGAAGCTGATAGGACCTAA

mRNA sequence

ATGTCTGGCATTAATCTGACAAGAGGTTTAACAGCGTGCACGAACAACGTCGCAACCAGCAGCCTCCGAGCGCGCCAGCTACCTGCTCCGCCTTGTATAGTGCCCATCTGTAGCATGCTTCATCCGGAAACTAACGCCCCACACTGCCCTCTACTTAGCGCACCTTGCTCTGCACACAGTGATTGTAGCAAGCCTCGCGCAGTGCTCACCCACCCAGCGTGCTCTTTCATTGACGATATCCCTGCTCTTGTGAAGTTTTTGGATGTTGCTCAAACTCAGAATGTTGAAGCAAAAGAAATGACAGAACAGAAAGTAAACAGATTAGAAACAGAGTTATCATTGGTCTCTCAATACCTTGCTCAAATTAAGGATGTAGCAGACAAGTTCTCAGCCATTGGTGAACCCTTGTCCTATGAAGATCATTTGGGTTACATTCTAGAGGGCCTTGGCACTGAATATAACCCCTTTGCTACCTCTATCCAAAATCGAACCAATCGTCATTCTCTTGCTGATGTCCGTAGCCTATTCCTAGTCTATGAAGCTGATAGGACCTAA

Coding sequence (CDS)

ATGTCTGGCATTAATCTGACAAGAGGTTTAACAGCGTGCACGAACAACGTCGCAACCAGCAGCCTCCGAGCGCGCCAGCTACCTGCTCCGCCTTGTATAGTGCCCATCTGTAGCATGCTTCATCCGGAAACTAACGCCCCACACTGCCCTCTACTTAGCGCACCTTGCTCTGCACACAGTGATTGTAGCAAGCCTCGCGCAGTGCTCACCCACCCAGCGTGCTCTTTCATTGACGATATCCCTGCTCTTGTGAAGTTTTTGGATGTTGCTCAAACTCAGAATGTTGAAGCAAAAGAAATGACAGAACAGAAAGTAAACAGATTAGAAACAGAGTTATCATTGGTCTCTCAATACCTTGCTCAAATTAAGGATGTAGCAGACAAGTTCTCAGCCATTGGTGAACCCTTGTCCTATGAAGATCATTTGGGTTACATTCTAGAGGGCCTTGGCACTGAATATAACCCCTTTGCTACCTCTATCCAAAATCGAACCAATCGTCATTCTCTTGCTGATGTCCGTAGCCTATTCCTAGTCTATGAAGCTGATAGGACCTAA

Protein sequence

MSGINLTRGLTACTNNVATSSLRARQLPAPPCIVPICSMLHPETNAPHCPLLSAPCSAHSDCSKPRAVLTHPACSFIDDIPALVKFLDVAQTQNVEAKEMTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEADRT

Homology

[Close]

BLAST of Spg034623 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-20
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 104 KVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNR 163
           ++ +++ +   VSQYLAQIKDV D F+AIGEPLSY DHL YILEGLG+EYNPF +SI NR
Sbjct: 35  QLQKIKKDGLTVSQYLAQIKDVLDNFAAIGEPLSYRDHLSYILEGLGSEYNPFVSSIHNR 94

Query: 164 TNRHSLADVRSLFLVYEA 182
           TNR S+ADVR+L + Y++
Sbjct: 95  TNRPSIADVRNLLITYDS 112

[Close]

BLAST of Spg034623 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 5.4e-18
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 101 TEQKVNRLETEL-------SLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEY 160
           T  ++  L+TEL       S VSQYLA+IK++ADKF+A+GEPLSY DHL ++L+GLG+EY
Sbjct: 128 TTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEY 187

Query: 161 NPFATSIQNRTNRHSLADVRSLFLVYEA 182
           N F TSI NR +  SL DVRSL L YEA
Sbjct: 188 NAFVTSIHNRADSPSLEDVRSLLLAYEA 215

[Close]

BLAST of Spg034623 vs. NCBI nr
Match: TXG68750.1 (hypothetical protein EZV62_003685 [Acer yangbiense])

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-16
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 100 MTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATS 159
           +   ++  L+ E + ++QYL Q K++ DKF+AIGEPLSY DHLGY+LEGLG EY+ F TS
Sbjct: 75  LARSQLTNLKKEGTTINQYLFQFKEIVDKFAAIGEPLSYRDHLGYLLEGLGHEYDAFVTS 134

Query: 160 IQNRTNRHSLADVRSLFLVYE 181
           I+NR ++ S+ DV SL L +E
Sbjct: 135 IENRVDKPSIEDVESLLLSHE 155

[Close]

BLAST of Spg034623 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-15
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 104 KVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNR 163
           ++ ++  +   +SQYL+QIKDVADKFS +GE +SY DHL +IL+GLG+EYN F TSIQN 
Sbjct: 6   RLQKIRKDNLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVTSIQNH 65

Query: 164 TNRHSLADVRSLFLVYEA 182
            +  S+ DV SL L YEA
Sbjct: 66  VDNLSVEDVWSLLLSYEA 83

[Close]

BLAST of Spg034623 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-14
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 94  NVEAKEMTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEY 153
           N + KE+ + K + L      VSQYLA+IK++  K S+IGEP+S +DH+ YI+EGLG EY
Sbjct: 2   NQKIKEIQQVKKDGLS-----VSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEY 61

Query: 154 NPFATSIQNRTNRHSLADVRSLFLVYE 181
           N F TSIQNR++  +L DVR+L L Y+
Sbjct: 62  NAFVTSIQNRSDMXTLEDVRTLLLAYD 83

[Close]

BLAST of Spg034623 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 101 TEQKVNRLETEL-------SLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEY 160
           T  ++  L+TEL       S VSQYLA+IK++ADKF+A+GEPLSY DHL ++L+GLG+EY
Sbjct: 128 TTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEY 187

Query: 161 NPFATSIQNRTNRHSLADVRSLFLVYEA 182
           N F TSI NR +  SL DVRSL L YEA
Sbjct: 188 NAFVTSIHNRADSPSLEDVRSLLLAYEA 215

[Close]

BLAST of Spg034623 vs. ExPASy TrEMBL
Match: A0A5C7IHH0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-16
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 100 MTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATS 159
           +   ++  L+ E + ++QYL Q K++ DKF+AIGEPLSY DHLGY+LEGLG EY+ F TS
Sbjct: 75  LARSQLTNLKKEGTTINQYLFQFKEIVDKFAAIGEPLSYRDHLGYLLEGLGHEYDAFVTS 134

Query: 160 IQNRTNRHSLADVRSLFLVYE 181
           I+NR ++ S+ DV SL L +E
Sbjct: 135 IENRVDKPSIEDVESLLLSHE 155

[Close]

BLAST of Spg034623 vs. ExPASy TrEMBL
Match: A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 94  NVEAKEMTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEY 153
           N + KE+ + K + L      VSQYLA+IK++  K S+IGEP+S +DH+ YI+EGLG EY
Sbjct: 2   NQKIKEIQQVKKDGLS-----VSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEY 61

Query: 154 NPFATSIQNRTNRHSLADVRSLFLVYE 181
           N F TSIQNR++  +L DVR+L L Y+
Sbjct: 62  NAFVTSIQNRSDMXTLEDVRTLLLAYD 83

[Close]

BLAST of Spg034623 vs. ExPASy TrEMBL
Match: A0A5C7I9Y1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007395 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.7e-14
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 102 EQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQ 161
           + ++  L  E + ++QYL Q KD+ADKF+ +GEPLSY  HLGY  EGLG EY+ F TSI+
Sbjct: 92  KSQLTNLRKEGTTINQYLFQFKDIADKFATVGEPLSYRYHLGYFSEGLGPEYDAFVTSIE 151

Query: 162 NRTNRHSLADVRSLFLVYEA 182
           N  +R S+ DV SL L +E+
Sbjct: 152 NIVDRPSIEDVHSLLLSHES 171

[Close]

BLAST of Spg034623 vs. ExPASy TrEMBL
Match: A5BPS3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013628 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 53/136 (38.97%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 63  SKPRAVLTHPACSFID----DIPALVKFLDVAQTQNVEAKEMTEQKVNRL---------- 122
           + P+ +   P  S  D    + P   KFLD AQ Q +    +  +++NRL          
Sbjct: 13  ANPQNINPTPISSLEDFIEGETPIPAKFLDDAQLQ-INPLFIQWERMNRLVMSWIYSSLT 72

Query: 123 -----ETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNR 180
                + E   +S+YLA+IK+V DK+SA+GEPLSY D L Y L GL  EY+ F TSI NR
Sbjct: 73  LAMKIKKEGITISEYLARIKEVFDKYSAMGEPLSYRDKLMYTLNGLTEEYDGFVTSIYNR 132

The following BLAST results are available for this feature:

BLAST of Spg034623 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887133.1	7.5e-20	64.10	uncharacterized protein LOC120077323 [Benincasa hispida]	[more]
XP_022155181.1	5.4e-18	59.09	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
TXG68750.1	8.6e-16	53.09	hypothetical protein EZV62_003685 [Acer yangbiense]	[more]
XP_038891713.1	7.3e-15	56.41	uncharacterized protein LOC120081111 [Benincasa hispida]	[more]
XP_022148871.1	2.1e-14	51.72	uncharacterized protein LOC111017438 [Momordica charantia]	[more]

BLAST of Spg034623 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg034623 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	2.6e-18	59.09	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5C7IHH0	4.2e-16	53.09	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1	[more]
A0A6J1D6N7	1.0e-14	51.72	uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5C7I9Y1	6.7e-14	51.25	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007395 PE=4 SV=1	[more]
A5BPS3	1.8e-11	38.97	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013628 PE=4 SV=1	[more]

BLAST of Spg034623 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 114..180 e-value: 2.4E-7 score: 30.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034623.1	Spg034623.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding