Spg034580 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034580
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold4: 12162486 .. 12164261 (-)
RNA-Seq Expression	Spg034580
Synteny	Spg034580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCGGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTAAATTATCTACAACTTTCATGAAGAATTTGTGAGCCAAAAATGACTTTAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGACATATTGGTTGGGAATCTAGTTTTCATTTCTTCAGGTAAGTTTTAGAGTGTTCGAAAATGAAGAGTGTGATGTGTATTGCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCTTTCCTATGAATGATACATGATTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGACATCTTTTAAAGCAAAGTATGGATTAGCAAGTACTTCTAAATGATTTTCGGTTTTCCACGAGCAAGCTGAGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTAACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCAGGCCCCACTACATCGTAGGACTAGTAAACGTTGATTGTACTAGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAGAACGTTTAATGTACTTGATATGCCTTGCTACATTTTTAATGACGAACTTGCGAGATATTTTAGCAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACATGTTTGACTTCCGGATTTAGAGTTTTAAAGTTTGTCACTCACTGGGCTTCGTAGCTCATCCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATTTCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

mRNA sequence

ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

Coding sequence (CDS)

ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

Protein sequence

MENRAQDFRAKQEDLWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

Homology

[Close]

BLAST of Spg034580 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 77/118 (65.25%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 15  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLE 74
           L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLE
Sbjct: 61  LGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLE 120

Query: 75  LYIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 104
           LY ESV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Sbjct: 121 LYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGG 178

[Close]

BLAST of Spg034580 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 5.1e-26
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 17  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----N 76
           PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV  +  F    +
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 77  VSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG 104
           V V       GS GIVRGDD+CWLHAVF AK AG PGG
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGG 176

[Close]

BLAST of Spg034580 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 6.7e-26
Identity = 70/112 (62.50%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 9   RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSR 68
           RA+    WPRGNR SLQTGELDKT                 VEIELP+PDTLPTSAESS 
Sbjct: 115 RAEPSGTWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSE 174

Query: 69  SSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 104
           S+SST LELY ESV  +       GS GI+RGDDVCWLHAVFRAK  GGPGG
Sbjct: 175 SNSSTLLELYFESVHVE-----MFGSVGIIRGDDVCWLHAVFRAKTTGGPGG 221

[Close]

BLAST of Spg034580 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 6.7e-26
Identity = 70/112 (62.50%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 9   RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSR 68
           RA+    WPRGNR SLQTGELDKT                 VEIELP+PDTLPTSAESS 
Sbjct: 115 RAEPSGTWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSE 174

Query: 69  SSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 104
           S+SST LELY ESV  +       GS GI+RGDDVCWLHAVFRAK  GGPGG
Sbjct: 175 SNSSTLLELYFESVHVE-----MFGSVGIIRGDDVCWLHAVFRAKTTGGPGG 221

[Close]

BLAST of Spg034580 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 8.8e-26
Identity = 73/121 (60.33%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 14  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSST 73
           D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SST
Sbjct: 58  DVMLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSST 117

Query: 74  WLELYIESV--------------TFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG 104
           WLELY ESV                   F+V VGSTGIVRGDDVCWLHAVFRAK  GGPG
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPG 177

[Close]

BLAST of Spg034580 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.7e-28
Identity = 77/118 (65.25%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 15  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLE 74
           L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLE
Sbjct: 61  LGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLE 120

Query: 75  LYIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 104
           LY ESV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Sbjct: 121 LYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGG 178

[Close]

BLAST of Spg034580 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 17  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----N 76
           PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV  +  F    +
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 77  VSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG 104
           V V       GS GIVRGDD+CWLHAVF AK AG PGG
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGG 176

[Close]

BLAST of Spg034580 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.3e-26
Identity = 70/112 (62.50%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 9   RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSR 68
           RA+    WPRGNR SLQTGELDKT                 VEIELP+PDTLPTSAESS 
Sbjct: 115 RAEPSGTWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSE 174

Query: 69  SSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 104
           S+SST LELY ESV  +       GS GI+RGDDVCWLHAVFRAK  GGPGG
Sbjct: 175 SNSSTLLELYFESVHVE-----MFGSVGIIRGDDVCWLHAVFRAKTTGGPGG 221

[Close]

BLAST of Spg034580 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.3e-26
Identity = 70/112 (62.50%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 9   RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSR 68
           RA+    WPRGNR SLQTGELDKT                 VEIELP+PDTLPTSAESS 
Sbjct: 115 RAEPSGTWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSE 174

Query: 69  SSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 104
           S+SST LELY ESV  +       GS GI+RGDDVCWLHAVFRAK  GGPGG
Sbjct: 175 SNSSTLLELYFESVHVE-----MFGSVGIIRGDDVCWLHAVFRAKTTGGPGG 221

[Close]

BLAST of Spg034580 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 73/121 (60.33%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 14  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSST 73
           D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SST
Sbjct: 58  DVMLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSST 117

Query: 74  WLELYIESV--------------TFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG 104
           WLELY ESV                   F+V VGSTGIVRGDDVCWLHAVFRAK  GGPG
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPG 177

The following BLAST results are available for this feature:

BLAST of Spg034580 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11835.1	1.6e-27	65.25	uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]	[more]
KAA0052218.1	5.1e-26	69.39	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0042035.1	6.7e-26	62.50	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK17971.1	6.7e-26	62.50	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0062409.1	8.8e-26	60.33	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Spg034580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg034580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJX3	7.7e-28	65.25	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UAH6	2.5e-26	69.39	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TKT0	3.3e-26	62.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3D150	3.3e-26	62.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A5A7V9N3	4.2e-26	60.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of Spg034580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034580.1	Spg034580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity