Spg034578 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034578
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCOP9 signalosome complex subunit 7 isoform X2
Locationscaffold4: 14769980 .. 14772844 (+)
RNA-Seq ExpressionSpg034578
SyntenySpg034578
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGCTCAATCGTGATGCTTCTTGGAGTGACACAACAACCAAAGGAGCAATCACTTGGATCTTTCGAGATGCTGCAGGAGTACCGGTGCGAGCGAGATGTAGAACAACAAATCGCAAGTGGAGAGTCTCTTGGCTTGAAGTGTGGGATGCATGCAAAGGTTTGAAGTCTATCCCCTCAAACGCTCCTCCAATTCATGTTAAGCTTGATGCCCTCCATGTCGTGAAGTTGCTGCTCGATGAAGAGGAAGATGCTTCAGAACTGTCTAACTTCATAAAGGAAGCCAAGGCCCTAATTGCTACTAGGAGTATTGAGAAGATAGCTCATGCTCCAAGAATACATAATAGTATGGCCCAAAGGGCTTCTGCTTTAGATTTATCTGAGAGTTGGGGTAATTTTTTTTTCCTATTTGGTTGCTAGCTTTTAATGCTACAGACAGTTGTAATGGTTATTCCACTTATGAGGTTCTTGTCCCACTAGTGATTTTCCTTTGGGTCTTTTGCCAATTTTAATTTTATTGAGGTATTATTTTTCAAAAAAAAAAATCGACTAAAATAAAACTTTTGAAAATTCAGAGGTATAATTGAAAACGAACCCATAATTTAGGGTATTTTTGATAATATAATCTACAAAAATGAACCTTTTTTTTTCTGCCATTTCCCCGATTTATTTTGGATCTAACATGAATTTGGGTAATGAGTAGTGACTTGCGAGTAAAGACATCCACGAGAGGGAAGGGGGCGGTGGGGGTCTAAGTACCAAAATAACAATAACAACTTTTTGGGAGTGGTGCTGTGCGTTCGACTCTCAACTCACTGCTCTGAAGAACCCTAAGCCAAGCCCCGACAGATCAAAATTCTGAAGCTTCTTCGCCTGATTTCTTGCTGTTTCGACTCATCTCGATGATCCAATCCCTTTGGCTTGCTCCCTGATTCCAATCCCCCTTCTCGTTTGTATCTGTTTCACCATTCTTTTTGTAGAATCTTCATTTGCTCAAAAAATGGATATTGAGCAGAAGCAAACCGAGTTCATCGATCAGTTTGTAAAGCAAGCTTCGTCTCTCAAAGGCTCCGCACTTGCGTCTGTTGTCACCGAGGCCACTTCTCACCCCTCCCTCTTCGCTTTCTCTGAAATTCTTGCCGTTCCCAACGTCGTCGAGGTTCGAATATAATGATTACTCTTTTTCTCCCCCTACCTTTTGACTGCTAGGTTTATTTTGTACGAATTATTATTGTTTTTTTTTCGTCTCTGTAATTCTTGACTGTTTGATTGGAGAGAAAGATACAGGTAAATTAAGCAAAATTTGAATTAAGTAGGAAAATATTGGATGTATGTATTTATTTATTTTTTTGCTGTATTGTTGGTTTTTTATTCTATCTTATCAATTACATCGATAGGAATATGAATAATTTCTGTTGATTGCTCAAGAAACCTGGACGATGAGCTACGAAATTCTTTTGTTCCAAAAATGAATGTCTCCCTAACTTATGTTATCCAAACTGTGGAGTGCCGTTAGATTTATCATACATTTTAAAGTTGCACATATATTATTTTCGGTAAATTACCACTTCTGTTAAGAAGAATGTGCTCCCCCGCTTTCTTTGGGTTTTCTTTGGCCCCTCACTAGTCGTGAGTCGTCTCAAGAGATGATCAGGATCTTCCAGGGAAAAGGGATTTGCGAACTTGGGATCCTAGTCCGTTTGAGGGCTTCTCTTCTTATTCGTTTTTCTCCATCGATTGTTTCCCCTTTCCCATTCAGAGGGCCTCAGTGTTCTCTTCTTTGTGGAAGATTAAAACTATTAAAATCCCTAAGAAAGTGTAGTTTTTTGCCTAGCAAGTCTTACATGGTAGAGTCAACACCTAGGACCGTATCCAATGGCATTCTTCTTTGGTTTTGCCTCCGCAGTGGTGTGTTGTTTGTAGACAGCAGGAGAAAGATCCTGACCATCTTCTGTGGGGTTGCCAATTTGCTTATTCCCTTTAGAGTCGTTGTTTTAGTTTGTTTGGGGTTGCTATGGTGTGTAATATGGACCGTCGGTCTTTGTTTGAGGAAATCGTGATGAACTTGCCGTTGTTGTGCTATTTTGTGGGGAGTGTGGATTGAGAGAAATAGTATAATTTTTAGAGGGATGGAGAGGTCTTTGGAATAGGTTTGGGAGGAAGGGGTTAGGTTTAGTGCTTCTTTATGAATGTTCATTTGTTGAACTTTTCGTAATTATTAGCTTAATATTATTTTTTTAGATTGGAGCCCATTCTTGTAGGTAGTTGAGGGCTCCTTGTACATTCTTTCATTTTTCTCAATGAAAGCCCAGGTTCTTACCCAAAAAAAAACCCAAGGCTAATTACTCCATCAATTTTCTTGGTTCATTTTTCCTTGATGCTTTTCGGCTACTAGAGTGGTGGTGGTGGTGGGTTTATTTATTTATTTTATTTTATTTTATTTTATAAATAAATATTATTATTTTTGTTTGCTATGTATTTATTTTTAAATGAACAGTCCATTGATAATGTGTTTTTTTGGCTTACTAGAGTTGTGATATCAATCTCAAGTTTTTAGTGGATTGTTCTAACTCCTTTGAATTGTAAAATAAAATTATTGTTCTACCTTTTGCAGCTAGAAGGAACTGAGCATTCTGTATATCTTGACATGCTTCGCTTGTTTGCATATGGAACATGGAGTGATTACAAGAGTAAGTTGAAATTTTATAAGATTTGTGATATAATTGGAATTTTATCATTAGTTTTATGTCAAGAATGTTATGATATTTTATTCATTTATTTCATTTTGTTTTGTTAAGAACACCCAAATTGACAATTAAATTAGGCTTAGGGAAAACTCATGCTTTCTTCATAGGGGAGTAA

mRNA sequence

ATGTGGAAGCTCAATCGTGATGCTTCTTGGAGTGACACAACAACCAAAGGAGCAATCACTTGGATCTTTCGAGATGCTGCAGGAGTACCGGTGCGAGCGAGATGTAGAACAACAAATCGCAAGTGGAGAGTCTCTTGGCTTGAAGTGTGGGATGCATGCAAAGGTTTGAAGTCTATCCCCTCAAACGCTCCTCCAATTCATGTTAAGCTTGATGCCCTCCATGTCGTGAAGTTGCTGCTCGATGAAGAGGAAGATGCTTCAGAACTGTCTAACTTCATAAAGGAAGCCAAGGCCCTAATTGCTACTAGGAGTATTGAGAAGATAGCTCATGCTCCAAGAATACATAATAGTATGGCCCAAAGGGCTTCTGCTTTAGATTTATCTGAGAGTTGGGAATCTTCATTTGCTCAAAAAATGGATATTGAGCAGAAGCAAACCGAGTTCATCGATCAGTTTGTAAAGCAAGCTTCGTCTCTCAAAGGCTCCGCACTTGCGTCTGTTGTCACCGAGGCCACTTCTCACCCCTCCCTCTTCGCTTTCTCTGAAATTCTTGCCGTTCCCAACGTCGTCGAGCTAGAAGGAACTGAGCATTCTGTATATCTTGACATGCTTCGCTTGTTTGCATATGGAACATGGAGTGATTACAAGAGGGAGTAA

Coding sequence (CDS)

ATGTGGAAGCTCAATCGTGATGCTTCTTGGAGTGACACAACAACCAAAGGAGCAATCACTTGGATCTTTCGAGATGCTGCAGGAGTACCGGTGCGAGCGAGATGTAGAACAACAAATCGCAAGTGGAGAGTCTCTTGGCTTGAAGTGTGGGATGCATGCAAAGGTTTGAAGTCTATCCCCTCAAACGCTCCTCCAATTCATGTTAAGCTTGATGCCCTCCATGTCGTGAAGTTGCTGCTCGATGAAGAGGAAGATGCTTCAGAACTGTCTAACTTCATAAAGGAAGCCAAGGCCCTAATTGCTACTAGGAGTATTGAGAAGATAGCTCATGCTCCAAGAATACATAATAGTATGGCCCAAAGGGCTTCTGCTTTAGATTTATCTGAGAGTTGGGAATCTTCATTTGCTCAAAAAATGGATATTGAGCAGAAGCAAACCGAGTTCATCGATCAGTTTGTAAAGCAAGCTTCGTCTCTCAAAGGCTCCGCACTTGCGTCTGTTGTCACCGAGGCCACTTCTCACCCCTCCCTCTTCGCTTTCTCTGAAATTCTTGCCGTTCCCAACGTCGTCGAGCTAGAAGGAACTGAGCATTCTGTATATCTTGACATGCTTCGCTTGTTTGCATATGGAACATGGAGTGATTACAAGAGGGAGTAA

Protein sequence

MWKLNRDASWSDTTTKGAITWIFRDAAGVPVRARCRTTNRKWRVSWLEVWDACKGLKSIPSNAPPIHVKLDALHVVKLLLDEEEDASELSNFIKEAKALIATRSIEKIAHAPRIHNSMAQRASALDLSESWESSFAQKMDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYKRE
Homology
[Close]
BLAST of Spg034578 vs. NCBI nr
Match: XP_038907172.1 (COP9 signalosome complex subunit 7 isoform X2 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 9.2e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS
Sbjct: 1   MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. NCBI nr
Match: XP_038907171.1 (COP9 signalosome complex subunit 7 isoform X1 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 9.2e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS
Sbjct: 1   MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. NCBI nr
Match: XP_038907173.1 (COP9 signalosome complex subunit 7 isoform X3 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 9.2e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS
Sbjct: 1   MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. NCBI nr
Match: XP_022157039.1 (COP9 signalosome complex subunit 7 isoform X6 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-31
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHS
Sbjct: 1   MDIEQKQTEFIDHFVKQASSLKGSSLASVVTEATSHPSLFAFSEILAVPNVIELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. NCBI nr
Match: XP_022157037.1 (COP9 signalosome complex subunit 7 isoform X4 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-31
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHS
Sbjct: 1   MDIEQKQTEFIDHFVKQASSLKGSSLASVVTEATSHPSLFAFSEILAVPNVIELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. ExPASy Swiss-Prot
Match: Q94JU3 (COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=CSN7 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQ E IDQ VK+AS+ K  AL  ++ EATSHPSLFAFSEILA+PNV +LEGT  S
Sbjct: 1   MDIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFA+GTW DYK
Sbjct: 61  VYLDLLRLFAHGTWGDYK 78

[Close]
BLAST of Spg034578 vs. ExPASy Swiss-Prot
Match: Q55BD5 (COP9 signalosome complex subunit 7 OS=Dictyostelium discoideum OX=44689 GN=csn7 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 149 IDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFA 208
           + QFV  A S KG A+ S++ +A +HPS+F F E+L +PNV +L+ TE   Y D+L +FA
Sbjct: 14  LKQFVVLAKSSKGRAIVSIIEKALNHPSVFVFGELLDMPNVQQLKETEFKNYYDLLLIFA 73

Query: 209 YGTWSDYKRE 219
           YG++ DYK +
Sbjct: 74  YGSFIDYKNK 83

[Close]
BLAST of Spg034578 vs. ExPASy Swiss-Prot
Match: Q2KI56 (COP9 signalosome complex subunit 7b OS=Bos taurus OX=9913 GN=COPS7B PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-08
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 142 EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVY 201
           EQK  +  ++QF+  A    GSAL +++++    P ++ F E+L + NV EL    ++ Y
Sbjct: 4   EQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAY 63

Query: 202 LDMLRLFAYGTWSDY 216
           L +L LFAYGT+ DY
Sbjct: 64  LQLLNLFAYGTYPDY 78

[Close]
BLAST of Spg034578 vs. ExPASy Swiss-Prot
Match: Q9H9Q2 (COP9 signalosome complex subunit 7b OS=Homo sapiens OX=9606 GN=COPS7B PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-08
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 142 EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVY 201
           EQK  +  ++QF+  A    GSAL +++++    P ++ F E+L + NV EL    ++ Y
Sbjct: 4   EQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAY 63

Query: 202 LDMLRLFAYGTWSDY 216
           L +L LFAYGT+ DY
Sbjct: 64  LQLLNLFAYGTYPDY 78

[Close]
BLAST of Spg034578 vs. ExPASy Swiss-Prot
Match: Q8BV13 (COP9 signalosome complex subunit 7b OS=Mus musculus OX=10090 GN=Cops7b PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-08
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 142 EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVY 201
           EQK  +  ++QF+  A    GSAL +++++    P ++ F E+L + NV EL    ++ Y
Sbjct: 4   EQKPSSNLLEQFILLAKGTSGSALTTLISQVLEAPGVYVFGELLELANVQELAEGANAAY 63

Query: 202 LDMLRLFAYGTWSDY 216
           L +L LFAYGT+ DY
Sbjct: 64  LQLLNLFAYGTYPDY 78

[Close]
BLAST of Spg034578 vs. ExPASy TrEMBL
Match: A0A6J1DS07 (COP9 signalosome complex subunit 7 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023861 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHS
Sbjct: 1   MDIEQKQTEFIDHFVKQASSLKGSSLASVVTEATSHPSLFAFSEILAVPNVIELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. ExPASy TrEMBL
Match: A0A6J1DVC9 (COP9 signalosome complex subunit 7 isoform X6 OS=Momordica charantia OX=3673 GN=LOC111023861 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHS
Sbjct: 1   MDIEQKQTEFIDHFVKQASSLKGSSLASVVTEATSHPSLFAFSEILAVPNVIELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. ExPASy TrEMBL
Match: A0A6J1DWS8 (COP9 signalosome complex subunit 7 isoform X8 OS=Momordica charantia OX=3673 GN=LOC111023861 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHS
Sbjct: 1   MDIEQKQTEFIDHFVKQASSLKGSSLASVVTEATSHPSLFAFSEILAVPNVIELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. ExPASy TrEMBL
Match: A0A6J1DTH8 (COP9 signalosome complex subunit 7 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111023861 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHS
Sbjct: 1   MDIEQKQTEFIDHFVKQASSLKGSSLASVVTEATSHPSLFAFSEILAVPNVIELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. ExPASy TrEMBL
Match: A0A6J1DVC3 (COP9 signalosome complex subunit 7 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023861 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-32
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHS
Sbjct: 1   MDIEQKQTEFIDHFVKQASSLKGSSLASVVTEATSHPSLFAFSEILAVPNVIELEGTEHS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFAYGTWSDYK
Sbjct: 61  VYLDVLRLFAYGTWSDYK 78

[Close]
BLAST of Spg034578 vs. TAIR 10
Match: AT1G02090.2 (Proteasome component (PCI) domain protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-26
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQ E IDQ VK+AS+ K  AL  ++ EATSHPSLFAFSEILA+PNV +LEGT  S
Sbjct: 1   MDIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFA+GTW DYK
Sbjct: 61  VYLDLLRLFAHGTWGDYK 78

[Close]
BLAST of Spg034578 vs. TAIR 10
Match: AT1G02090.1 (Proteasome component (PCI) domain protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-26
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQ E IDQ VK+AS+ K  AL  ++ EATSHPSLFAFSEILA+PNV +LEGT  S
Sbjct: 1   MDIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFA+GTW DYK
Sbjct: 61  VYLDLLRLFAHGTWGDYK 78

[Close]
BLAST of Spg034578 vs. TAIR 10
Match: AT1G02090.3 (Proteasome component (PCI) domain protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-26
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0 

Query: 139 MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHS 198
           MDIEQKQ E IDQ VK+AS+ K  AL  ++ EATSHPSLFAFSEILA+PNV +LEGT  S
Sbjct: 1   MDIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDS 60

Query: 199 VYLDMLRLFAYGTWSDYK 217
           VYLD+LRLFA+GTW DYK
Sbjct: 61  VYLDLLRLFAHGTWGDYK 78

The following BLAST results are available for this feature:
BLAST of Spg034578 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038907172.19.2e-3398.72COP9 signalosome complex subunit 7 isoform X2 [Benincasa hispida][more]
XP_038907171.19.2e-3398.72COP9 signalosome complex subunit 7 isoform X1 [Benincasa hispida][more]
XP_038907173.19.2e-3398.72COP9 signalosome complex subunit 7 isoform X3 [Benincasa hispida][more]
XP_022157039.11.0e-3194.87COP9 signalosome complex subunit 7 isoform X6 [Momordica charantia][more]
XP_022157037.11.0e-3194.87COP9 signalosome complex subunit 7 isoform X4 [Momordica charantia][more]
BLAST of Spg034578 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94JU34.3e-2573.08COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=CSN7 PE=1 ... [more]
Q55BD51.6e-1147.14COP9 signalosome complex subunit 7 OS=Dictyostelium discoideum OX=44689 GN=csn7 ... [more]
Q2KI568.1e-0838.67COP9 signalosome complex subunit 7b OS=Bos taurus OX=9913 GN=COPS7B PE=2 SV=1[more]
Q9H9Q28.1e-0838.67COP9 signalosome complex subunit 7b OS=Homo sapiens OX=9606 GN=COPS7B PE=1 SV=1[more]
Q8BV138.1e-0838.67COP9 signalosome complex subunit 7b OS=Mus musculus OX=10090 GN=Cops7b PE=1 SV=1[more]
BLAST of Spg034578 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DS074.9e-3294.87COP9 signalosome complex subunit 7 isoform X2 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1DVC94.9e-3294.87COP9 signalosome complex subunit 7 isoform X6 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1DWS84.9e-3294.87COP9 signalosome complex subunit 7 isoform X8 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1DTH84.9e-3294.87COP9 signalosome complex subunit 7 isoform X4 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1DVC34.9e-3294.87COP9 signalosome complex subunit 7 isoform X1 OS=Momordica charantia OX=3673 GN=... [more]
BLAST of Spg034578 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G02090.23.1e-2673.08Proteasome component (PCI) domain protein [more]
AT1G02090.13.1e-2673.08Proteasome component (PCI) domain protein [more]
AT1G02090.33.1e-2673.08Proteasome component (PCI) domain protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..127
e-value: 2.1E-5
score: 26.6
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 5..122
e-value: 7.0E-11
score: 42.0
NoneNo IPR availablePANTHERPTHR15350COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17coord: 142..217
NoneNo IPR availablePANTHERPTHR15350:SF5COP9 SIGNALOSOME COMPLEX SUBUNIT 7coord: 142..217

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034578.1Spg034578.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity