Spg034457 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034457
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold4: 13716673 .. 13718278 (+)
RNA-Seq ExpressionSpg034457
SyntenySpg034457
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTAAAAGTTGAATCAGAAGCTCTATTTTGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAATAATTTGTGAGCCAAACATGACTTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAGCAGAGAACCTCAAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGGGAAAATTGGTTGGGCATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGATTGTTCGAAAATGAAGAGTTTGATGTATAGTACATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGGTATGGTATTGAATCTGGAAAATCTGGAAAGTAGAATGTGGAGTGAGATTTCTTACTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAACTAATTATGGTTCTGATGCTCGGCTTTGGTTGGTTGACAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATAAATGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGATTTATAAATGAGCACGTGATTATTGAGTTTCAGAAAAATAGTTGAAACGACATCCTTTTAAGTCAAGCATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTCCACGAGCAAGCTGAATAAGCTTGAGTTTTACTAGAGATAACGATAAGCAGGCATGTTCTAACGTTTTCATGTGATTTTCCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTTCTGGGTGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAATGTTTGATGTACTTGATATGTCTTGCTAGATTTTTAATGACGAGCCTGCGATTTTTTTAAGAAAGCTTTTATCGTTGCACATTTATGTTTAACGCCTTGGTTGAGCATCTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGGTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCAGTTGAATATGTTTTGGGTTGTGATATTTATTTCAGGTTATTTTCCAAACTGAGTTATGTCAGGGCTGCACCTCGTGTATGTTAAAAGTGTTTTC

mRNA sequence

GCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTAATTTCAGGAGGAAGATAAAGGGTAGCAGAGAACCTCAAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGGGAAAATTGGTTGGGCATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAA

Coding sequence (CDS)

GCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTAATTTCAGGAGGAAGATAAAGGGTAGCAGAGAACCTCAAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGGGAAAATTGGTTGGGCATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAA

Protein sequence

AQDFRAKQEDLWFNFRRKIKGSREPQICLVCVRGVSGKIGWASRFHFFRPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVL
Homology
[Close]
BLAST of Spg034457 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-12
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 50  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI 101
           PRGNR  L T +L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV++
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]
BLAST of Spg034457 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 39  IGWASRFHFFRPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESV 98
           I + + F    PRGNR   QT +L KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESV
Sbjct: 126 IQYPTTFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFESV 185

Query: 99  YI 101
           ++
Sbjct: 186 HV 187

[Close]
BLAST of Spg034457 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-11
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 50  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI 101
           PRGNR  LQ  +L KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESV++
Sbjct: 91  PRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHV 141

[Close]
BLAST of Spg034457 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-11
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 49  RPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI 101
           RPRGNR  LQT +L KTVEIELP+PDTLPT AES  S+SSTW+ELY ESV++
Sbjct: 30  RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESVHV 81

[Close]
BLAST of Spg034457 vs. NCBI nr
Match: KAA0066795.1 (uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK27942.1 uncharacterized protein E5676_scaffold384G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 8.0e-11
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 50  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI 101
           PRGNR  LQTREL KT  IELPVPDTLPTSAESS S+SSTW+ELY ESV++
Sbjct: 64  PRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFESVHV 112

[Close]
BLAST of Spg034457 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 50  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI 101
           PRGNR  L T +L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV++
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]
BLAST of Spg034457 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.0e-12
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 39  IGWASRFHFFRPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESV 98
           I + + F    PRGNR   QT +L KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESV
Sbjct: 126 IQYPTTFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFESV 185

Query: 99  YI 101
           ++
Sbjct: 186 HV 187

[Close]
BLAST of Spg034457 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 50  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI 101
           PRGNR  LQ  +L KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESV++
Sbjct: 91  PRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHV 141

[Close]
BLAST of Spg034457 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 49  RPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI 101
           RPRGNR  LQT +L KTVEIELP+PDTLPT AES  S+SSTW+ELY ESV++
Sbjct: 30  RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESVHV 81

[Close]
BLAST of Spg034457 vs. ExPASy TrEMBL
Match: A0A5D3DWP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001370 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.9e-11
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 50  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI 101
           PRGNR  LQTREL KT  IELPVPDTLPTSAESS S+SSTW+ELY ESV++
Sbjct: 64  PRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFESVHV 112

The following BLAST results are available for this feature:
BLAST of Spg034457 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.15.6e-1276.47uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
TYJ96965.11.2e-1166.13uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa][more]
KAA0062263.12.8e-1172.55hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa][more]
KAA0040420.16.2e-1173.08NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0066795.18.0e-1178.43uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of Spg034457 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034457 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH62.7e-1276.47CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BET36.0e-1266.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2F21.3e-1172.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TAS63.0e-1173.08NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DWP33.9e-1178.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg034457 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034457.1Spg034457.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding