Spg034455 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034455
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 13597271 .. 13598675 (+)
RNA-Seq ExpressionSpg034455
SyntenySpg034455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGTCTGGAACAGGGAGATCAACCTGTTGAAACTCAGCAGGAAAATCAAGAAAAGAGAGCAGAGGATGTGCAACAGCAAGGGAATGGTCAAGAAACCCAAGAACAACAGGTTCAGGGAGAGGTTTTGTTGGAGCCGTCGCGTCGTCGCCGCCGCAAGCAAAAGGCGAGACGAATCAAGGTGGGTAGGAAGACACTCCATCTCCGTCAACAACGAAATATGAGAAGGAAAATACAGAGAAGGAGGATCAAGAGAAAGAGGAAACTAACAAGAAAACTGAAGAGGAGGCTCTGACGAAGCAACAAGAAGACAAGGGAAAAGGAGTTGCTGAAGCAACAGTCGAAGCAGAGGAGGCTGAGACTGAGGAACCAAGACTGTCGTATGAGCGCTTCGTCAACAATCTTGCCAGAGCAAAATATTTGGAAATACTGAAACGGGACTTCCTATTTGAGAGAGGGTTTGGAGAAGATCTACCACATTTTCTTCGAGCAGGGATCACAAACCATGGATGAGAGAAATTCAGTGCAAAGTCGGAGTCAGTAAACTCGAATGTATTTCGCGAGTTCTACGTGAACATTGATGAAGAAGAAGGCTTCCAGGAAATTGTCCGTGGGGTAACAGTAGACTGGAGCCTAGGTGCGATAAACTCTTTATTCAATCTCTAGGATTTTCCACACGCCAGTTATAACGAGATGGTGGTAGCATCATCTAATGATCAGTTGAATGCGGCCGTGAGAGAAGTTGGAATTGAAGGGGCTCAGTGGAGGTTGTAAAAGACAGAAAAGCGCACTTTTCAGGCCGCATAATTGAAGAGCGAAGCAAACACCTGGTTGGGCTTCGTCAAATAGCGTCTTCTACCGACAACCCATGATTCTACAGTCTCCCGCGACAGAGTGCTCCTAGTTTTTGCAATCCTGAGGTCCCTAAGTATTGACGTTGGTAAGGTGATTTCTAGTGAGATCCACAACTGCTGGCGCAAAAAGGTGGGCAAATTATTTTTTCCGAATACCATTACGATGTTGTGCAATAGGGCATGGGTGCCCACAACTCCAGAGGATGTAATTTTAATCGAAAAGGGGATTATTGACACACCCAACCTAGCAAGGCTTCAACGTACTCAAGAAGCACGACAAGGAGGGTTAGTGTGCGGCATCCACCAGATCTTAGAACAACTCCAACTTTCAGCCAGTAGGCAGGAGTGTGCTGAGAGGCAAGCTCAGACCTATTGGACTTATGTTAAGAGAAGGGATGCCACGTTAAGGAAGACACTGCAGTCGAATTTTTCAAAGCCATATGCTGTCTTCCCAGTTTTCCCCGATGACTTGCTAAACCCCTGGATCCCACCGCCACCAGTCGAAAGAGAAGAACAAGAAGAGGATGATCAGGGTCAGGAAGATTGA

mRNA sequence

ATGGAAAAGGTCTGGAACAGGGAGATCAACCTGTTGAAACTCAGCAGGAAAATCAAGAAAAGAGAGCAGAGGATGTGCAACAGCAAGGGAATGGTCAAGAAACCCAAGAACAACAGGTTCAGGGAGAGGTTTTGTTGGAGCCGTCGCGTCGTCGCCGCCGCAAGCAAAAGGCGAGACGAATCAAGGTGGCAACAAGAAGACAAGGGAAAAGGAGTTGCTGAAGCAACAGTCGAAGCAGAGGAGGCTGAGACTGAGGAACCAAGACTGTCGTATGAGCGCTTCGTCAACAATCTTGCCAGAGCAAAATATTTGGAAATACTGAAACGGGACTTCCTATTTGAGAGAGGTTATAACGAGATGGTGGTAGCATCATCTAATGATCAGTTGAATGCGGCCGTGAGAGAAGTTGGAATTGAAGGGGCTCAGTGGAGGGCATGGGTGCCCACAACTCCAGAGGATGTAATTTTAATCGAAAAGGGGATTATTGACACACCCAACCTAGCAAGGCTTCAACGTACTCAAGAAGCACGACAAGGAGGGTTAGTGTGCGGCATCCACCAGATCTTAGAACAACTCCAACTTTCAGCCAGTAGGCAGGAGTGTGCTGAGAGGCAAGCTCAGACCTATTGGACTTATGTTAAGAGAAGGGATGCCACGTTAAGGAAGACACTGCAGTCGAATTTTTCAAAGCCATATGCTGTCTTCCCAGTTTTCCCCGATGACTTGCTAAACCCCTGGATCCCACCGCCACCAGTCGAAAGAGAAGAACAAGAAGAGGATGATCAGGGTCAGGAAGATTGA

Coding sequence (CDS)

ATGGAAAAGGTCTGGAACAGGGAGATCAACCTGTTGAAACTCAGCAGGAAAATCAAGAAAAGAGAGCAGAGGATGTGCAACAGCAAGGGAATGGTCAAGAAACCCAAGAACAACAGGTTCAGGGAGAGGTTTTGTTGGAGCCGTCGCGTCGTCGCCGCCGCAAGCAAAAGGCGAGACGAATCAAGGTGGCAACAAGAAGACAAGGGAAAAGGAGTTGCTGAAGCAACAGTCGAAGCAGAGGAGGCTGAGACTGAGGAACCAAGACTGTCGTATGAGCGCTTCGTCAACAATCTTGCCAGAGCAAAATATTTGGAAATACTGAAACGGGACTTCCTATTTGAGAGAGGTTATAACGAGATGGTGGTAGCATCATCTAATGATCAGTTGAATGCGGCCGTGAGAGAAGTTGGAATTGAAGGGGCTCAGTGGAGGGCATGGGTGCCCACAACTCCAGAGGATGTAATTTTAATCGAAAAGGGGATTATTGACACACCCAACCTAGCAAGGCTTCAACGTACTCAAGAAGCACGACAAGGAGGGTTAGTGTGCGGCATCCACCAGATCTTAGAACAACTCCAACTTTCAGCCAGTAGGCAGGAGTGTGCTGAGAGGCAAGCTCAGACCTATTGGACTTATGTTAAGAGAAGGGATGCCACGTTAAGGAAGACACTGCAGTCGAATTTTTCAAAGCCATATGCTGTCTTCCCAGTTTTCCCCGATGACTTGCTAAACCCCTGGATCCCACCGCCACCAGTCGAAAGAGAAGAACAAGAAGAGGATGATCAGGGTCAGGAAGATTGA

Protein sequence

MEKVWNREINLLKLSRKIKKREQRMCNSKGMVKKPKNNRFRERFCWSRRVVAAASKRRDESRWQQEDKGKGVAEATVEAEEAETEEPRLSYERFVNNLARAKYLEILKRDFLFERGYNEMVVASSNDQLNAAVREVGIEGAQWRAWVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLVCGIHQILEQLQLSASRQECAERQAQTYWTYVKRRDATLRKTLQSNFSKPYAVFPVFPDDLLNPWIPPPPVEREEQEEDDQGQED
Homology
[Close]
BLAST of Spg034455 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 58.5 bits (140), Expect = 9.9e-05
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 165 PNLARLQRTQEARQGGLVCGIHQILEQLQLSASRQECAERQAQTYWTYVKRRDATLRKTL 224
           P+ +R      +R  G    + Q L+ L+   S+QE   +Q Q +W Y K RD  L+K L
Sbjct: 210 PSSSRPAAASSSRTNG---DVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKAL 269

Query: 225 QSNFSKPYAVFPVFPDDLL 244
           Q+NF++P   FP FP ++L
Sbjct: 270 QNNFTRPIPTFPAFPQEIL 285

[Close]
BLAST of Spg034455 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-05
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 165 PNLARLQRTQEARQGGLVCGIHQILEQLQLSASRQECAERQAQTYWTYVKRRDATLRKTL 224
           P+ +R      +R  G    + Q L+ L+   S+QE   +Q Q +W Y K RD  L+K L
Sbjct: 210 PSSSRPAAASSSRTNG---DVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKAL 269

Query: 225 QSNFSKPYAVFPVFPDDLL 244
           Q+NF++P   FP FP ++L
Sbjct: 270 QNNFTRPIPTFPAFPQEIL 285

The following BLAST results are available for this feature:
BLAST of Spg034455 vs. NCBI nr
Match NameE-valueIdentityDescription
PON78020.19.9e-0536.71hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
BLAST of Spg034455 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5DXM34.8e-0536.71Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
BLAST of Spg034455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034455.1Spg034455.1mRNA