Spg034453 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034453
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA-binding KH domain-containing protein
Location	scaffold4: 14183148 .. 14193944 (+)
RNA-Seq Expression	Spg034453
Synteny	Spg034453

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTGTTGGTTCTCTATGGTATCATCAACTATCATCATTTCTCTTCTACATTCACGTCTTCGCAGCCTGTCACGGCCATCTTCCATAGCCCACTGACGTGAAGATTCCTCCAAACATGCAACCAGGTGATATCCCTGTATACCCTTCCATGCCCGCCAAGCCTCCCTTGCCTGTTTCTATGCCCTTACCCGGCACTATGTTCGTTTACAAGCCCGGGCATGCCGTCACCGGCAAACGTCGCCGTGAGGACGACCCGATCGTACCCAATTCGGAGCCCGCAGATGTATCGGCTCCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTCAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATCGGTAAAGTTGGTTGCCGAATCCAGAAGGTTCGTGAGGAAACCAAAGCTACAATCAAGATTGCGGATGCAGTCGCGGTATGGTTTCGTATTTGATTTTTAGTGCTTCCGGTTAGGGTTTTCGTTTCCTTTTCTTTGCCGCGCTTTTCCTTTGTTTGGCTATTGAGGAAGTATTGAAAGCAATCTTCCATGTTTTTCTCTTTGTTTAATTTTAGCGGTGATTCTTTTCTATTAACTCTTTTGCTGGTTGTATTGTATGTCAAATGGTCGTTGTATTGGTGACAGTTTGAGCTTTTGTTGATGTTTCAGCGATACGAAGAACGTGTTATCATTATAAGTTCCAAGGACAGTGAGAATTCGGTTACTGATGCGGAGAAAGCACTTCAGCAAATTGCAGCACTGATATTGAAGGTCATACATCCAATTGCTAAACTGTGCCGTAGAGATGACATATTTATTTTCTTATGTGGCTGCCCAAAGTAGGAGTCTAGGGCCTTCTTCTTTGCTAATCATAAATTTGTGTTAGCTAGGGGTGTAGTGGTAGAAATTATTTGAGTTAAAAAGTGAATTCTTTATAATATGGTGCATTTTGGATTATGAATCTGTTATTTTTTATCCATATCAATAAATATTTTTTTCCTACTATGATTCAAAATCTATTGAATTGTCCAAACCTAAACATTGGATGTCATGACTGAACCCCTTGGATATTAGTATTACGTAGAGGATGTGAGTTTAAAAACCTTAGATCATCTTCCCTAAATATTTATTTATTATTATTGTTTCTGTGGGTCAAAGACTTATATGATAACGATATACAGAATATATCACTACTTTACTATTTAGACTGATTTTAGTCTACCATGAAACTTTGGCCTGCATGTGATGTTGAGTCTCAAGAATCTTCTTTTGTTTTTGATGTGGAAAAGCTAATTTCAAAGAAAATCAAGTTTCTTGTACGGTTTGTTTATTTGGGGAGGTTAAACACTGTCCAAACTCGAAAGACCTTCATCCCATGGTTATGGATTCCTGCATAAGATGGCGACAAATAATTTAGACTGATGTTAGTCTACCATGAAACTTTGAAAAAGTTTTTGGGGCACGTTTGGAGTCAATTTAGATACAGTCAGAGTGAAGATGACTAGCCTTGATGAGCTTTGAGACTCTATCAAACTCTTTGCATCCATCTGGTGTTTTCTTTCTAAGTCCTTTTGTAATTATGATCTTGTGCATATTTTGGCTAATTGGAAGTCTTTTTTGTAACCCTATGGCCTTGTGGGGATATCTCATCTCTTTTTTTGTATGACTTTCTCTCAATCAAGATATCCTTTTTTTCTTAAAAAAAAATAGTCAGTTATGTAGGTAGTTTTAGAAGTTCTTTTGTTTTAACTGTTTTACTTTTTTTAAATATATTGTTGTTAATTCCTCTGTAAATGGAGACTTTTAGCTTTACGTTCACACATCATAATCAAATTTTATTTTTGAGTGGCATTTCTGTTTGAGAGCTTTAGGCTACACCACAGAGGTTGTGAGGGTGAGTATATGTTGGAGGAGGTGGTTGTTAATAATCTCCTTACTCCTTAGTGGTTCCGGTTTTTTGGCAATGGCCTTTTGTGCTATTTTATGGAATTTTTGTGCCTTGAGAGGAACTAGAGGTTTTAGGTATACTTAAAACTCTTGGGAGGAGGTTTGGTGTGTGGCAAATTTAAATGCCTCTTTCTGGGAATTTTTGTTTTCAAGAATTCTGCAACCTCCCTTATTTATTTTTCTTAACAGTTAGAGCTATCTCTTGTAATTTTGCTTTATATTTTGTTTTTGTTTGCTCATTTATTCGGAAGTTCTTTTCCTTAGGCCCATCCTTTTGTACTTTCATTTTTCTTAATAGAAGTTACTTTTTTCTTTTTTGATATATATATATATATGTATATAAAGAAGACATATTCCTTATCCACAATGGTTGGAAGCTAAACTTCATGAATTTTTTTTCGCTTCGTTGGTGTGTAAAATGAGGTAGTGATGATGGAGGTGCTTTACCTTCCTCTGTTGTCTTTGGGTTTTATGCTCCATCTCTCTGATAGAGAGACTTTAGATGTTGCAAGACTTCTTTCTATTCTCCAGAATCAATGTGTGCTTTGAGGGGCAGGGACTCTAGGGTTTGGACCTTATATTCTTCTAGGGGATTCCCTTGCAGTTCTTACATCCAGTTGTTGTCGGTCCCTTCCCTACTCTAAACCGCCTCCGTCTCCGTCTCCGCTTTCTCCTCTCTCTGTAAGTTTAAAATCCCTAGGAAAGTAAATGTTTTGTGTGGTAGGTTTTACGTGGGAGAGTCAACACCATGAACCGTTTCCAAAGACATTTTTTTGTTTGTGTTGTTTCTGCATTGGTGTATCTTTTGTAGGACCTTCATCACTTATCATGGGATTGCCAGTTTGTTTAATCTCAGTCCCTTTTGGGCTCGTTTGTTGAATTTGTTTAGTTTATGTTTGGCTTGGGATGGAGACTGTTATGCTATGATTGAAGAGGTGCTTCTAGGTTCGCCTTTTTAAGAAAAGGGCAAAGTCGTGTGGCATGCTAGTTTCTTTGCTATTTTATGGGATTCAGTTGGAGAGGAAAAATAAGATTTTTAGAGAGGTTGAGTGGTCTTGTGGTGAGGTTTGGGAGGTGGTGAGGTTTAATGCCTCTTTGGGGCCGATGGTCACTAGGCCTTTTTGTAATTATTATTTTAGTTTGATTTTGTTGAAATGGACTCCCCTCTTGTAGTTTTTGGAACTTTCTTTTTGTTGTGTTTGTTTTTTGTATGCTCTTTTATATCCTTTGATTTTTCTCAATGAAAGCTCATTATTTTCCCTAAAAACGGAGGTAATGGGTGTTAATGTAATTACTTCAGAAAATATTGTGTTATAGACGGCAATTTAGAGTTTTCAATCAGAGGTTGGCAACTTTAGTCCACATTGACTGCCTTAGAAATCTGATTTTTCCCCCTTTCAATAAGTTAAATATTTAGATAAAAAATGTCTAAATTGGGATGCTTTTGTCTTCCCTTTATGTTGTTATTTTCTTTCTTTATTTCACTCTTATGTGGAGTTTGTATCTTTTAAGCATTAGTCTCTTTTAATTTCTTTAATGTAGATGAAAATAAAAAGACCACACTTGAAGTTATTCATTTCCAATGCAAGTAACAGCAATTTCATCCTGTGGTTGGTTTCTTTTTTCTTCTTTTTTTTCTTTTTTACATAATTATATGCAATTGAGCTAGCATACATGCACTTTGAAAAATCATACCTACCCCTCTAACCTTTGATGGGTAGTATATTTCATAAATTAGATAGGTAGCCATTATTGTTTTAACCTACAAGTATGGATTGCTATATTTTCCAAAATAACCTGTCCATACTTGATCAATTACATTACTCCCCTTGATGTGCTGATGTTCTCGTCATAGAATGACAGCTTCTTACATTTATTTTTGATCCTTCTTGAGAATTTTGTATCTACTACTTGTTTTTTTTTTTTCTTTTTTTAATTATACTTTCAGTTATATTTTTACAGGAAGATGGTACTAGCATTGAGGAACTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTAATAGCAGGATCTCAAGCAGGTTCTTTGATTGGTGCCTCGGGTCAAAATATTGAGAAATTGAGGAATTCTTCTGGTGCATCAATTACGATTCTTGCCCCAAATCAATTACCTCTTTGTGCTTCTGCTCATGAATCTGACCGAGTGGTGCAAGTGAGTTTTTCACATTGTCAGAAGTTAGAACATTGGTAGTTTATCATTTTTTCTGCCTTCCTATCATATTCATCACTTTTTGTTTTATCATATAATGATATGACCAGTGTTACAGCTATTCTTGAGGCTATTTCATTTCAAAATTGAGCGAGATGTTTTAGTAGTTGTCCATTGCAATTAATGAGACGAAAACAGTCTTTGGTTCTTTTCTAACGTTTGTTAAATGACCGGTGACTAAAAAGGTTGACTTTCATTCATGATGAGTGGAGCTAATTATTATTGGATGATAGTGATAGGAATGTCATTAGGGTGGAATTAAGAACAGTAGTAAGGGTATATTAGCAATTAATGAAGGAGTTTGTTAGGGTATTTGGTTATAAATTGGGTGAGTGAGAAAGAAGAAGGTAAGTATTGATTCAATGAGTTTAGGGCTTGGATGATCTCAAGAGAGGGAGGGTTCGAGTACCTTGGAACACTTTGGTTTATGTTATAGTTTGGTTATCTTTTATGTTGCAATATAGTTTGGGTTCCATCCGTTGGTATCATAGCTGTTGGTTCTGGCCTTAGAAGCATAGACACTCTATTTTAGGACACGTCTGGGACACACTTGAAAATTAAAACTCATTCTGGAAAGGATTAAAAGCTAAGCTCATTAAGCCCAACATAAAAAGTAAAAAAAGAACCATAAACTTTTAAATAGAAAATCCTAAAAAGTAAAAACCATCTTAAGGAATCGTTGGTTTGCCAACTGCACTTGTCACTACCTAGTTCATACCATAAGGTTTGGTTTTTTTTTTTTCTCTCTCTCTCTCTCTTCCTAAATTTCATAAAAGACCAAAGTTATAGAAGGCCTCTAAATTCTAATTTTTCCAACAAATCATATATGTTTATCATTTATAAACCATTAGAAGATATCTTTAATGTCTAACCATATCCATAGCCACTAAAATCCTTTGAATTTTTCTAATGTTGAAGTTGAATCAATATATACATATATTCCATTAAAAGAAAAAAAATGTGTCCCCAACGTGTCCGTGTCCTACTTTTTTGTAAATCGACGTATCGTCGTGTCTGTCTCTGTGTTGTGTTGTGTCCGTGCTTCTTAGTCGATAAAGATAAAGGAGTTTGTTAGAGTATTTGGTTATAAATAGAGTGAGTAGGGAAGGAGAAGGTAAACATTGATTCAATGAGTTTAGAAGAGTGGGAGGTCCAAGTACTTTGAAACACTTGGTTTACCTTGTAGTTTGGTTAACTTTTATATTGCAATATATTTCAGGTTCTATCAGATAGTGAATATTAACCACACAATACACATTCCTACTTTTGTAGTTTTGTAATGGTTGGTTTTGGCTAGTAATGTATTGTATCATTTGCAGTTCTCTTTCCAGAACTTTCTCCTGGTGAATTTTATAATGTACAAATTTATAGTTCAATGCTGTTCAGGTTAATGAACTGTATGCACCATGGTTTTTTTCTTTTTTATTCTTCTTTGCACTCTTTTATTGCTTCCTCCCAGTTTGATTTGTATCCATCTATGTTTTCATATAATGAAATGGAAGAAGTTGATAGTTTTGTATTGGTACACCCGGATAATATTTCTTGAACAAATCATTCTACAAGAACTTGTTCCTTATGGGATATTGTGATTTCACTCTGTAAACAAACTAGACTAATATTATATATGGATTTTAGCATGCTCTCTTTGTGAGAAATTGAAATTTCAAGAGCGGTTGTTTGTTTGAGAAATTTTAAGATTGGCATTAGAAGATAAAATTACACTGTTTTCAAGATTGGGATACTCCATTGCTGCTTGCTTAGGTTCTGCCTTGGGAATGAAGACCCTCTGAAGTAGTTAGGGAATGGAAATTGGTCTTAAGCAATGAGAAGGTTGCTAGAATTTTCTGCCAGTCTTATCCTTCAAGATACTGTTCTCATTAATAATTTTAAACTTTACATGCTAAGAATGATTTAATTTCGAAATTTTGTATTCATTAAATCTTAGAAATCAGAATTATTTAATTTCAAGCTCAATCATTCTTAAATGTGCATGTCATTGTTTACCTAATAGAGTGCGGTTTTTTTTTTGAGGGGTTATGGTGGTGAGGGGTGAGAGGAATAATAGAATCTTTAGAGGGGTTGGGGAGATTTCCTAGTGATGTTTGGTCCAATATTAGTTTCTATGTTTCTTTCACTTCGGGTGTCGGTGTCTAAGGCTTTTTGTAATTATCCGTTAGGTTTCATTTTGCGTGATTGGAGCCCCTTTCTGTAGTTGAGTTATGTTTTTGGGGGATTGGTTTTTTTGGATGCCCTTGTATTCTTTTTTTTTTTTTTTTTTTCCCCTGAATGAAAGCTTGGTTTTTATTAAAAAAAAAAAAAATTACCAAGTAGTTTATTTATTGAACTTTATGCAAATGTTTGAAATTATCATGCTCACTCTCACGTTGCTTGGCTACTTTTCTTGATCTCTTGTTCTTGCATCACATCCCATCTAATCTCGGATACATCCAAGATCTCATGTTATTTATTAACAGCTAGCACTAACGATTGATTATGTTTCATCTGTAACTCAGATTTCAGGGGATGTTCCTGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGTCCTATATTGAACAATATTTCAGAATTTACCTGATTCATGTGCACTTCTGAAACTTTTACATATACTACACTCATTTTGTGGTGTACAAGATAATTGCAGCAGATGTTCTTCAGATCAATTGTATCTTGGCGTCCTGTATTTCTTTCTATTTTGTAGTGATTTGGGCTTGAATTCAATTTCAGGGTAAATCCACCTCGGCAAGTCATTTCTGTTAGCCCAACATATAATTATAATGCAATGCACCCACCACAGTCATATATGGATCCAACCTCAGGTTATTCAGTGGTTTTCTGTATCAAATAAATCATTTCTGATTCTGTCTTTTGTGTGTCTGTGAAGTTTTAATATTTTTTCTTCTAACCACATCATCTTTAGGAAAACCAATCTTGCAGTTAATTATGTAACCTTCGAGATGTTGATATCTGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGGGCTACAATCAAGGTCAGCAAACCAAGCATTATTATTTCACTATGAAAGATTCTGAAATTCCATTCCTAAATCTATATCCTTACATAATTCTTTACAGGTTTGTGGTGGAAGAGGTGAACAAAATTACAGACAAATACAATTTGGTGGAAGTGCTGAACAGGCATGAATTTTTCTCTTATTTTAAGGTTTCATGTACGCTAATTCGTGTGATGAGAAGGAGGGTGATCTTTTGTTGTTAGAAGTTAAGAACTGTCAGATTCTGAGGCTGGTTATATTATTTTTATTATTATTTTATATATAAAGGCTTGGTATGTCATTTTTCTATATGAATTAAAAAGGGGCAGTTGCATAGATGGCAAATTGGACCAAATTAATAGCAAATATAACACTGTTTCAAACTAATTGCAAATATAGCAAAATTAATTGTACAAGACCAAAAAGTTGTTGTCGGATTCTATCCGTGTCGATCACTGATAGACTCTGATTATTCAAAGTATGTCAGTGTCTATCGCTAATAGACTTCGATTAATCAAAGTCTATCACTGATAGACACTGATAGATTTTGATTAACCAGAGTTTATCAGCCATAGACACTGATAGACTGAATAATCGGAGTCTATCAGTAGACTGATAGATTCTGATTAATCAGAGTCTATCGCTGATAAACTCTGATAATCGAAGTTTATCAGATAGACTCCGATAGATTTTGCTATATTTGCAATTTTTTTTACATGGTGCTATATTTGCTATTAATTTGGTCCAATTTGCCACCCACTGCAATTTTCCAATTAAAAATGCATGTAGGTTTGTATGTATATATTAGCAGCCATATGCAGATATCCGTACTCATGTTTTAAGGGCCCCCCTGCTTATCATTTGAATTAGATATTAAAAAATCGTGTAAGTTGTAATGTTAAAATCATTTATAACAAAAATGTATTCCTTAAATATTTAAGGTCTAAAACTTGAGTTTCGAGTAATGATATATATTTGACACTGATTACCTAAATATATTATTTTTGAATGGATGTGGGTGTATTCATAATTGAATGATTATCACTGATAGTGTATTGGTTTTTGTGCACCTTTATGTTTCCTTGTGTTCACTTATTGTTCATTTTGAATATTTTGACCTTGAAGTGGCTGATAAAAGATACCAATCTGCTATAAGGAAGTATAATTTACTATCTTTTTCAGGTGGCCATTGTCAAACGATGTAAATAACTTGTCTAGATTTTTTTATTGGATGTTTATCTTTAATGAATGAAGGTCTTCTGTAAGTATGCAATTTATCTTCTTTTTGGGTTATTTGCTTAGAGCAAGCACTTGTTTTAAAAAGACAAGCATGATGTGGAAGTTTTTTGGGGTGTTCTTTTTCTCACATTTTCTTGGTAGAGAAGAGTTAAATAAAAGATTTTGGACTTACTTTTGCTTCGATGTGTACTAAATAGGGATTGTTTTTATATTTTTCATAGTTTTTCCGGTTGATATTGATTTTTGTATTTTAATGAATTCTTGAATCTATAAAACTATCATATTTTATTACTATTGGTTTCTGAAGGATCAAACTGATAATGCCACGGTATGCCAGAAATAGATTAGCTTCAGAATATCTAGAGAATGCCTTAATTTTTTTTCTTTAACACCTCTCTGATTTGTTCTATTTTCTGGTTCTCATTTGTTTTATTTTCTGGTGAAGGAGCTTCATTTTGAATTGTTTGGATGGTTAACAGGTAGCATTGGCAAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACAGACAGCGTAGGTTTTCCTTGATAACTGTTCATACTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAAAAACTGTCCTGTGGTGAAGCCATAGTCTTCTAGGATTTTATCCCAAAAAAGAAAAAATAAAATTCAATTAGAAATTTGATTGAAATTGAAATGCCATGTTGGTAACAAAAAATTCAAAACCCTAAGTTGCTCAGTAATACTCTGTAACTTAGAGAGTAAAATGACTAATACTTAAAATTCCAATGGTACTTGAAAGAAAATGAACTGAATGGTAAGACTTGGTCAAGCCATATAACATTTAATATTTAGCTTTTAATCATGGACATTCAAGGAGAGTTTGTGATGATGTTTGAAAAAAGGTGGTGAAAAGTGCTTTTAGACCATTCAGATTCACAATCTTAGAGGAAATAGAAATGTCGTCCACACTAAAGCTAAAAGAACTTTCTCAAAACATCCTAATAAAAAACGTGGTTTGTGAAAATTCTAAAAACACCGAAAAAGAAACATTTAATAAACTTTATATGTGCTTCTTTTAGAAGTGCAAACTTAAAAAACACTTTTTAAAAAGCTATCTTTATCTCTGGTGTAAACGAGAGAGAAATTCAATGTGGTAGCTTGATTTCTCATCTCGAGATGTCTATTTTAGCTATCGAACTCTGTATGGACAAGAGAACTCTGTTTCTTGTTGCAATTCATGGATCGTGTATGGTTTCATCTGGCTCAATTTTATGAAACGTTTTCAACACCATCTGTGATAGAAAATTCTTATTTCTTTTTACCTTTGGGGTTCATGAGTGAGTTCCAGTCAAATATTTCAGTGTTTTCAACTATGAGAGTTAAAGGCAGCGCACAAATTGAATGAGGAATTGTCTTATAAATATGTAGGTTTAGTTAAGATCCCATGATTTTTTTTTTTTTTTTTTTTTGGTTTCAATTTAATCCATGTGATTTTAGATGTTTCATTTTAGTACCTAAGATTTGGTTCAGTCTCTTAAGGCATCTCTGGATTTATAAATATTGACAACTTTCTTATGTGTTGTGATTTCTTTGAGCATTAGCTCATTACCTCTATTAGTCCTACCCAAAGAAAGCATGACAACTAAGACAATTGTCAACCGATGCCAATGATGTTTTAGGGACTAAATAATTTAACCAAATACTATTGGGTTCTATTGCTACTAACTAACAAGTTTTCGGTGTTAGCTCATTTGGTGCAATGTTGGTTAGTCTGCAGATGTGGTAAATCTGAAACACAAAGAATCAACTTGTAATGCCAACATCTGCATGGGAAGCTCTGAAAGACAGCTCCTACAAACTTCAATCTGATGATTGGGTGGATGAGTAGTACAGTTGATGAAGTGCTGCAGGATTTTGCAATAATGGCTTCCTTTCTTTATTTTATTTTTTTTAACTGTGACATATTGTAATTGTGGGAAATAGTTGTCTGAATATTTTCTATATTAACAACTTCAGGGTATCTATAGCTATAAAAGGGTTGCTAGGAAAAGTTTGGCTTTTCAGCTCCGAGTCTTGAACTGGAATACCTATTTTTGTGACCTATCGTTTTCTTTTCAAGTGTGATTATACCCCGCGAACTGTAACTTTTTTAATATGAAAATGTGAGGATAAGTCATTTCTCAACGCAAACAAGTTAATGAATCTCTTTTTGTAACAACTTTGTTCAGACTTGTTTTATTGAGTTTGGGGCAAAAATTCGTTTTTAAATTGC

mRNA sequence

ATGCAACCAGGTGATATCCCTGTATACCCTTCCATGCCCGCCAAGCCTCCCTTGCCTGTTTCTATGCCCTTACCCGGCACTATGTTCGTTTACAAGCCCGGGCATGCCGTCACCGGCAAACGTCGCCGTGAGGACGACCCGATCGTACCCAATTCGGAGCCCGCAGATGTATCGGCTCCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTCAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATCGGTAAAGTTGGTTGCCGAATCCAGAAGGTTCGTGAGGAAACCAAAGCTACAATCAAGATTGCGGATGCAGTCGCGCGATACGAAGAACGTGTTATCATTATAAGTTCCAAGGACAGTGAGAATTCGGTTACTGATGCGGAGAAAGCACTTCAGCAAATTGCAGCACTGATATTGAAGTTCTTACATCCAGTTGTTGTCGGTCCCTTCCCTACTCTAAACCGCCTCCGTCTCCGTCTCCGCTTTCTCCTCTCTCTGACCTTCATCACTTATCATGGGATTGCCAGTTTGTTTAATCTCAGTCCCTTTTGGGCTCGTTTGTTGAATTTGTTTAGTTTATGTTTGGCTTGGGATGGAGACTGTTATGCTATGATTGAAGAGTTGGAGAGGAAAAATAAGATTTTTAGAGAGGTTGAGTGGTCTTGTGGTGAGGTTTGGGAGGTGGTGAGGTTTAATGCCTCTTTGGGGCCGATGGAAGATGGTACTAGCATTGAGGAACTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTAATAGCAGGATCTCAAGCAGGTTCTTTGATTGGTGCCTCGGGTCAAAATATTGAGAAATTGAGGAATTCTTCTGGTGCATCAATTACGATTCTTGCCCCAAATCAATTACCTCTTTGTGCTTCTGCTCATGAATCTGACCGAGTGGTGCAACTAGCACTAACGATTGATTATGTTTCATCTGTAACTCAGATTTCAGGGGATGTTCCTGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGGTAAATCCACCTCGGCAAGTCATTTCTGTTAGCCCAACATATAATTATAATGCAATGCACCCACCACAGTCATATATGGATCCAACCTCAGTTAATTATGTAACCTTCGAGATGTTGATATCTGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGGGCTACAATCAAGGATCAAACTGATAATGCCACGGTAGCATTGGCAAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACAGACAGCGTAG

Coding sequence (CDS)

ATGCAACCAGGTGATATCCCTGTATACCCTTCCATGCCCGCCAAGCCTCCCTTGCCTGTTTCTATGCCCTTACCCGGCACTATGTTCGTTTACAAGCCCGGGCATGCCGTCACCGGCAAACGTCGCCGTGAGGACGACCCGATCGTACCCAATTCGGAGCCCGCAGATGTATCGGCTCCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTCAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATCGGTAAAGTTGGTTGCCGAATCCAGAAGGTTCGTGAGGAAACCAAAGCTACAATCAAGATTGCGGATGCAGTCGCGCGATACGAAGAACGTGTTATCATTATAAGTTCCAAGGACAGTGAGAATTCGGTTACTGATGCGGAGAAAGCACTTCAGCAAATTGCAGCACTGATATTGAAGTTCTTACATCCAGTTGTTGTCGGTCCCTTCCCTACTCTAAACCGCCTCCGTCTCCGTCTCCGCTTTCTCCTCTCTCTGACCTTCATCACTTATCATGGGATTGCCAGTTTGTTTAATCTCAGTCCCTTTTGGGCTCGTTTGTTGAATTTGTTTAGTTTATGTTTGGCTTGGGATGGAGACTGTTATGCTATGATTGAAGAGTTGGAGAGGAAAAATAAGATTTTTAGAGAGGTTGAGTGGTCTTGTGGTGAGGTTTGGGAGGTGGTGAGGTTTAATGCCTCTTTGGGGCCGATGGAAGATGGTACTAGCATTGAGGAACTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTAATAGCAGGATCTCAAGCAGGTTCTTTGATTGGTGCCTCGGGTCAAAATATTGAGAAATTGAGGAATTCTTCTGGTGCATCAATTACGATTCTTGCCCCAAATCAATTACCTCTTTGTGCTTCTGCTCATGAATCTGACCGAGTGGTGCAACTAGCACTAACGATTGATTATGTTTCATCTGTAACTCAGATTTCAGGGGATGTTCCTGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGGTAAATCCACCTCGGCAAGTCATTTCTGTTAGCCCAACATATAATTATAATGCAATGCACCCACCACAGTCATATATGGATCCAACCTCAGTTAATTATGTAACCTTCGAGATGTTGATATCTGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGGGCTACAATCAAGGATCAAACTGATAATGCCACGGTAGCATTGGCAAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACAGACAGCGTAG

Protein sequence

MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAPKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASLFNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGPMEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKDQTDNATVALAKQRVDEYIYSQLMRQAGVQQTA

Homology

[Close]

BLAST of Spg034453 vs. NCBI nr
Match: XP_023514318.1 (poly(rC)-binding protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 535.0 bits (1377), Expect = 6.1e-148
Identity = 317/463 (68.47%), Postives = 323/463 (69.76%), Query Frame = 0


Query: 1   MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAP 60
           MQ GDIPVYPSMPAK PLPVSMPLPGT+ V KPGHAVTGKRRREDDPIVP SE  DVSAP
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIV PSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASL 180
           KD EN+VTDAEKALQQIAALILK                                     
Sbjct: 121 KDKENTVTDAEKALQQIAALILK------------------------------------- 180

Query: 181 FNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGP 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 MEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300
            EDGTSIEELKVGTGHVAANT+RLLIAGSQAGSLIGASGQNIEKLRNSSGAS+TILAPNQ
Sbjct: 241 -EDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQ 300

Query: 301 LPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 360
           LPLCASAHESDRVV             QISGDVPAVLKALEEIGNQLRVNPPRQVISVSP
Sbjct: 301 LPLCASAHESDRVV-------------QISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 352

Query: 361 TYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---- 420
           TYNYNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK    
Sbjct: 361 TYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGG 352

Query: 421 --DQT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
             +Q             VALAKQRVDEYIYSQLMRQAGVQ TA
Sbjct: 421 RGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTA 352

[Close]

BLAST of Spg034453 vs. NCBI nr
Match: XP_023005036.1 (poly(rC)-binding protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 534.6 bits (1376), Expect = 7.9e-148
Identity = 318/463 (68.68%), Postives = 323/463 (69.76%), Query Frame = 0


Query: 1   MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAP 60
           MQ GDIPVYPSMPAK PLPVSMPLPGT+ V KPGHAVTGKRRREDDPIVP SE  DV AP
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVLAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASL 180
           KD EN+VTDAEKALQQIAALILK                                     
Sbjct: 121 KDKENTVTDAEKALQQIAALILK------------------------------------- 180

Query: 181 FNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGP 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 MEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300
            EDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGAS+TILAPNQ
Sbjct: 241 -EDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQ 300

Query: 301 LPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 360
           LPLCASAHESDRVV             QISGDVPAVLKALEEIGNQLRVNPPRQVISVSP
Sbjct: 301 LPLCASAHESDRVV-------------QISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 352

Query: 361 TYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---- 420
           TYNYNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK    
Sbjct: 361 TYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGG 352

Query: 421 --DQT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
             +Q             VALAKQRVDEYIYSQLMRQAGVQ TA
Sbjct: 421 RGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTA 352

[Close]

BLAST of Spg034453 vs. NCBI nr
Match: XP_038875599.1 (flowering locus K homology domain-like isoform X1 [Benincasa hispida])

HSP 1 Score: 533.5 bits (1373), Expect = 1.8e-147
Identity = 313/463 (67.60%), Postives = 325/463 (70.19%), Query Frame = 0


Query: 1   MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAP 60
           MQPGDIP+YPS+P   PLPVSMPLPGT+ V +PGH VTGKRRREDDPIVPNSE +DVSAP
Sbjct: 1   MQPGDIPLYPSIPPMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASL 180
           KD++NSVTDAEKALQQIAALILK                                     
Sbjct: 121 KDNDNSVTDAEKALQQIAALILK------------------------------------- 180

Query: 181 FNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGP 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 MEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300
            EDGTS+EELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ
Sbjct: 241 -EDGTSVEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300

Query: 301 LPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 360
           LPLCASAHESDRVV             QISGD+PAVLKALEEIGNQLRVNPPRQVISVSP
Sbjct: 301 LPLCASAHESDRVV-------------QISGDIPAVLKALEEIGNQLRVNPPRQVISVSP 352

Query: 361 TYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---- 420
           TYNYN MHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK    
Sbjct: 361 TYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGG 352

Query: 421 --DQT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
             +Q             VALAKQRVDEYIYSQ++RQAGVQQTA
Sbjct: 421 RGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTA 352

[Close]

BLAST of Spg034453 vs. NCBI nr
Match: XP_023005037.1 (poly(rC)-binding protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 531.9 bits (1369), Expect = 5.2e-147
Identity = 316/460 (68.70%), Postives = 321/460 (69.78%), Query Frame = 0


Query: 4   GDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAPKRQ 63
           GDIPVYPSMPAK PLPVSMPLPGT+ V KPGHAVTGKRRREDDPIVP SE  DV APKRQ
Sbjct: 3   GDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVLAPKRQ 62

Query: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDS 123
           AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 63  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 122

Query: 124 ENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASLFNL 183
           EN+VTDAEKALQQIAALILK                                        
Sbjct: 123 ENTVTDAEKALQQIAALILK---------------------------------------- 182

Query: 184 SPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGPMED 243
                                                                     ED
Sbjct: 183 ----------------------------------------------------------ED 242

Query: 244 GTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPL 303
           GTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGAS+TILAPNQLPL
Sbjct: 243 GTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPL 302

Query: 304 CASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYN 363
           CASAHESDRVV             QISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYN
Sbjct: 303 CASAHESDRVV-------------QISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYN 351

Query: 364 YNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK------D 423
           YNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK      +
Sbjct: 363 YNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGE 351

Query: 424 QT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
           Q             VALAKQRVDEYIYSQLMRQAGVQ TA
Sbjct: 423 QNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTA 351

[Close]

BLAST of Spg034453 vs. NCBI nr
Match: KAG7025337.1 (RNA-binding KH domain-containing protein PEPPER [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 526.9 bits (1356), Expect = 1.7e-145
Identity = 313/449 (69.71%), Postives = 317/449 (70.60%), Query Frame = 0


Query: 1   MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAP 60
           MQ GDIPVYPSMPAK PL    PLPGT+ V KPGHAVTGKRRREDDPIVP SE  DVSAP
Sbjct: 1   MQSGDIPVYPSMPAKAPL----PLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASL 180
           KD EN+VTDAE ALQQIAALILK                                     
Sbjct: 121 KDKENTVTDAEIALQQIAALILK------------------------------------- 180

Query: 181 FNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGP 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 MEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300
            EDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGAS+TILAPNQ
Sbjct: 241 -EDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQ 300

Query: 301 LPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 360
           LPLCASAHESDRVV             QISGDVPAVLKALEEIGNQLRVNPPRQVISVSP
Sbjct: 301 LPLCASAHESDRVV-------------QISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 327

Query: 361 TYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKDQTD 420
           TYNYNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK    
Sbjct: 361 TYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---- 327

Query: 421 NATVALAKQRVDEYIYSQLMRQAGVQQTA 450
              VALAKQRVDEYIYSQLMRQAGVQ TA
Sbjct: 421 ---VALAKQRVDEYIYSQLMRQAGVQPTA 327

[Close]

BLAST of Spg034453 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-04
Identity = 23/59 (38.98%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 68  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDSENS 127
           + +FR++VP++++G +IG+ G  I+K+ EET+A IKI D      ER +++S K+   S
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPES 244

[Close]

BLAST of Spg034453 vs. ExPASy Swiss-Prot
Match: P57721 (Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-04
Identity = 54/179 (30.17%), Postives = 77/179 (43.02%), Query Frame = 0


Query: 249 ELKVGTGHVAAN-TIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASA 308
           E KV  G +    TIRLL+ G + GS+IG  G+ ++K+R  SGA I I   N    C   
Sbjct: 34  ESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----C--- 93

Query: 309 HESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYNYNAM 368
              +R+V              I+G   A+ KA   I  +        +I        N+M
Sbjct: 94  --PERIV-------------TITGPTDAIFKAFAMIAYKFE----EDII--------NSM 153

Query: 369 HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---DQTDNAT 424
               S    TS   VT  +++  +  G LIG GG  I  IR  +GA ++   D   N+T
Sbjct: 154 ----SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST 174

[Close]

BLAST of Spg034453 vs. ExPASy Swiss-Prot
Match: P57722 (Poly(rC)-binding protein 3 OS=Mus musculus OX=10090 GN=Pcbp3 PE=1 SV=3)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-04
Identity = 54/179 (30.17%), Postives = 77/179 (43.02%), Query Frame = 0


Query: 249 ELKVGTGHVAAN-TIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASA 308
           E KV  G +    TIRLL+ G + GS+IG  G+ ++K+R  SGA I I   N    C   
Sbjct: 34  ESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----C--- 93

Query: 309 HESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYNYNAM 368
              +R+V              I+G   A+ KA   I  +        +I        N+M
Sbjct: 94  --PERIV-------------TITGPTDAIFKAFAMIAYKFE----EDII--------NSM 153

Query: 369 HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---DQTDNAT 424
               S    TS   VT  +++  +  G LIG GG  I  IR  +GA ++   D   N+T
Sbjct: 154 ----SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST 174

[Close]

BLAST of Spg034453 vs. ExPASy Swiss-Prot
Match: Q9SZH4 (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.3e-04
Identity = 64/281 (22.78%), Postives = 105/281 (37.37%), Query Frame = 0


Query: 68  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDSENSV 127
           D +FR++VP  ++G +IG+ G  I+K+ EET+A IK+ D      +R+++IS K+   + 
Sbjct: 73  DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132

Query: 128 TDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASLFNLSPFW 187
                                                                  +SP  
Sbjct: 133 -------------------------------------------------------MSPAM 192

Query: 188 ARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGPMEDGTSI 247
             +L                        ++FR V               S  P  D   +
Sbjct: 193 DAVL------------------------RVFRRV---------------SGLPDNDDDDV 239

Query: 248 EELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASA 307
           +      G V  +++RLL+A +QA +LIG  G  I+ +  +SGAS+ IL+  + P  A+ 
Sbjct: 253 Q----NAGSV-FSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAA- 239

Query: 308 HESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLR 349
            + +R+V L              G+   +LKALE I   LR
Sbjct: 313 -QDERIVDL-------------QGEALKILKALEAIVGHLR 239

[Close]

BLAST of Spg034453 vs. ExPASy TrEMBL
Match: A0A6J1KTT5 (poly(RC)-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498149 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 3.8e-148
Identity = 318/463 (68.68%), Postives = 323/463 (69.76%), Query Frame = 0


Query: 1   MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAP 60
           MQ GDIPVYPSMPAK PLPVSMPLPGT+ V KPGHAVTGKRRREDDPIVP SE  DV AP
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVLAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASL 180
           KD EN+VTDAEKALQQIAALILK                                     
Sbjct: 121 KDKENTVTDAEKALQQIAALILK------------------------------------- 180

Query: 181 FNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGP 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 MEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300
            EDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGAS+TILAPNQ
Sbjct: 241 -EDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQ 300

Query: 301 LPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 360
           LPLCASAHESDRVV             QISGDVPAVLKALEEIGNQLRVNPPRQVISVSP
Sbjct: 301 LPLCASAHESDRVV-------------QISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 352

Query: 361 TYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---- 420
           TYNYNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK    
Sbjct: 361 TYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGG 352

Query: 421 --DQT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
             +Q             VALAKQRVDEYIYSQLMRQAGVQ TA
Sbjct: 421 RGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTA 352

[Close]

BLAST of Spg034453 vs. ExPASy TrEMBL
Match: A0A6J1KS32 (poly(RC)-binding protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498149 PE=4 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 2.5e-147
Identity = 316/460 (68.70%), Postives = 321/460 (69.78%), Query Frame = 0


Query: 4   GDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAPKRQ 63
           GDIPVYPSMPAK PLPVSMPLPGT+ V KPGHAVTGKRRREDDPIVP SE  DV APKRQ
Sbjct: 3   GDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVLAPKRQ 62

Query: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDS 123
           AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 63  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 122

Query: 124 ENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASLFNL 183
           EN+VTDAEKALQQIAALILK                                        
Sbjct: 123 ENTVTDAEKALQQIAALILK---------------------------------------- 182

Query: 184 SPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGPMED 243
                                                                     ED
Sbjct: 183 ----------------------------------------------------------ED 242

Query: 244 GTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPL 303
           GTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGAS+TILAPNQLPL
Sbjct: 243 GTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPL 302

Query: 304 CASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYN 363
           CASAHESDRVV             QISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYN
Sbjct: 303 CASAHESDRVV-------------QISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYN 351

Query: 364 YNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK------D 423
           YNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK      +
Sbjct: 363 YNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGE 351

Query: 424 QT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
           Q             VALAKQRVDEYIYSQLMRQAGVQ TA
Sbjct: 423 QNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTA 351

[Close]

BLAST of Spg034453 vs. ExPASy TrEMBL
Match: A0A5A7T8H9 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002850 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 3.0e-145
Identity = 312/463 (67.39%), Postives = 323/463 (69.76%), Query Frame = 0


Query: 1   MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAP 60
           MQPGDIP+YPSMPA  PLPVSMPLPGT+ V +PGH VTGKRRREDD IV NS+ +DVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASL 180
           KD+ENSVTDAEKALQQIAALILK                                     
Sbjct: 121 KDNENSVTDAEKALQQIAALILK------------------------------------- 180

Query: 181 FNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGP 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 MEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300
            EDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ
Sbjct: 241 -EDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300

Query: 301 LPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 360
           LPLCASAHESDRVV             QISGD+ AVLKALEEIGNQLRVNPPRQVISVSP
Sbjct: 301 LPLCASAHESDRVV-------------QISGDILAVLKALEEIGNQLRVNPPRQVISVSP 352

Query: 361 TYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---- 420
           TYNYN MHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK    
Sbjct: 361 TYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGG 352

Query: 421 --DQT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
             +Q             VALAKQRVDEYIYSQ++RQAGVQQTA
Sbjct: 421 RGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTA 352

[Close]

BLAST of Spg034453 vs. ExPASy TrEMBL
Match: A0A1S3CB11 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo OX=3656 GN=LOC103498803 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 3.0e-145
Identity = 312/463 (67.39%), Postives = 323/463 (69.76%), Query Frame = 0


Query: 1   MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAP 60
           MQPGDIP+YPSMPA  PLPVSMPLPGT+ V +PGH VTGKRRREDD IV NS+ +DVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASL 180
           KD+ENSVTDAEKALQQIAALILK                                     
Sbjct: 121 KDNENSVTDAEKALQQIAALILK------------------------------------- 180

Query: 181 FNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGP 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 MEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300
            EDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ
Sbjct: 241 -EDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300

Query: 301 LPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 360
           LPLCASAHESDRVV             QISGD+ AVLKALEEIGNQLRVNPPRQVISVSP
Sbjct: 301 LPLCASAHESDRVV-------------QISGDILAVLKALEEIGNQLRVNPPRQVISVSP 352

Query: 361 TYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---- 420
           TYNYN MHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK    
Sbjct: 361 TYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGG 352

Query: 421 --DQT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
             +Q             VALAKQRVDEYIYSQ++RQAGVQQTA
Sbjct: 421 RGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTA 352

[Close]

BLAST of Spg034453 vs. ExPASy TrEMBL
Match: A0A0A0KCF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103530 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 4.0e-145
Identity = 311/463 (67.17%), Postives = 323/463 (69.76%), Query Frame = 0


Query: 1   MQPGDIPVYPSMPAKPPLPVSMPLPGTMFVYKPGHAVTGKRRREDDPIVPNSEPADVSAP 60
           MQPGDIP+YPSMPA  PLPVSMPLPGT+ V +PGH VTGKRRREDD IV NS+ +D+SAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDISAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDSENSVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASL 180
           KD+ENSVTDAEKALQQIAALILK                                     
Sbjct: 121 KDNENSVTDAEKALQQIAALILK------------------------------------- 180

Query: 181 FNLSPFWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGP 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 MEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300
            EDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ
Sbjct: 241 -EDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQ 300

Query: 301 LPLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSP 360
           LPLCASAHESDRVV             QISGD+ AVLKALEEIGNQLRVNPPRQVISVSP
Sbjct: 301 LPLCASAHESDRVV-------------QISGDILAVLKALEEIGNQLRVNPPRQVISVSP 352

Query: 361 TYNYNAMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---- 420
           TYNYN MHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK    
Sbjct: 361 TYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGG 352

Query: 421 --DQT--------DNATVALAKQRVDEYIYSQLMRQAGVQQTA 450
             +Q             VALAKQRVDEYIYSQ++RQAGVQQTA
Sbjct: 421 RGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTA 352

[Close]

BLAST of Spg034453 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-10
Identity = 93/410 (22.68%), Postives = 150/410 (36.59%), Query Frame = 0


Query: 68  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVI-IISSKDSENS 127
           D +FR + P K+IG VIG+ G  ++++R +T++ I+I +A+   +ERVI I S  D  N+
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 128 VTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASLFNLSPF 187
             D EK L      + + +H  VV                                    
Sbjct: 109 FGDGEKVLSPAQDALFR-IHDRVVA----------------------------------- 168

Query: 188 WARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGPMEDGTS 247
                                                                   D   
Sbjct: 169 --------------------------------------------------------DDAR 228

Query: 248 IEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCAS 307
            E+   G   V   T +LL+   Q G ++G  GQ ++ +R+ +GA I I+    +PLCA 
Sbjct: 229 SEDSPEGEKQV---TAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCAL 288

Query: 308 AHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYNYNA 367
              SD ++             QISG+V  V KAL +I ++L  NP R    +S +  Y A
Sbjct: 289 --NSDELI-------------QISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPA 344

Query: 368 ---------------------------------MHPPQSYMDPTSVNYVTFEMLISET-L 427
                                              PP++  DP +  +  F  L+S    
Sbjct: 349 GSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRN--DPPATEF--FIRLVSPVEN 344

Query: 428 VGGLIGIGGFNISRIRNESGATIK-----DQTDNATVALAKQRVDEYIYS 438
           +  +IG GG  I+++R E+ ATIK      + ++  + ++ + V E  YS
Sbjct: 409 IASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYS 344

[Close]

BLAST of Spg034453 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-10
Identity = 93/410 (22.68%), Postives = 150/410 (36.59%), Query Frame = 0


Query: 68  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVI-IISSKDSENS 127
           D +FR + P K+IG VIG+ G  ++++R +T++ I+I +A+   +ERVI I S  D  N+
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 128 VTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASLFNLSPF 187
             D EK L      + + +H  VV                                    
Sbjct: 109 FGDGEKVLSPAQDALFR-IHDRVVA----------------------------------- 168

Query: 188 WARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGPMEDGTS 247
                                                                   D   
Sbjct: 169 --------------------------------------------------------DDAR 228

Query: 248 IEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCAS 307
            E+   G   V   T +LL+   Q G ++G  GQ ++ +R+ +GA I I+    +PLCA 
Sbjct: 229 SEDSPEGEKQV---TAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCAL 288

Query: 308 AHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPRQVISVSPTYNYNA 367
              SD ++             QISG+V  V KAL +I ++L  NP R    +S +  Y A
Sbjct: 289 --NSDELI-------------QISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPA 344

Query: 368 ---------------------------------MHPPQSYMDPTSVNYVTFEMLISET-L 427
                                              PP++  DP +  +  F  L+S    
Sbjct: 349 GSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRN--DPPATEF--FIRLVSPVEN 344

Query: 428 VGGLIGIGGFNISRIRNESGATIK-----DQTDNATVALAKQRVDEYIYS 438
           +  +IG GG  I+++R E+ ATIK      + ++  + ++ + V E  YS
Sbjct: 409 IASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYS 344

[Close]

BLAST of Spg034453 vs. TAIR 10
Match: AT1G14170.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-08
Identity = 86/371 (23.18%), Postives = 141/371 (38.01%), Query Frame = 0


Query: 66  AHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDSEN 125
           + D ++R + P K+ G +IGK G   +++R ETK+ ++I +A+   EERV+ + S + E 
Sbjct: 16  SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 75

Query: 126 SVTDAEKALQQIAALILKFLHPVVVGPFPTLNRLRLRLRFLLSLTFITYHGIASLFNLSP 185
           +    +  L   A   L  +H +VV                                   
Sbjct: 76  NHFGDDGELVCPALDALFKVHDMVVA---------------------------------- 135

Query: 186 FWARLLNLFSLCLAWDGDCYAMIEELERKNKIFREVEWSCGEVWEVVRFNASLGPMEDGT 245
                          D D                                      +DGT
Sbjct: 136 ---------------DAD-------------------------------------QDDGT 195

Query: 246 SIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCA 305
             +      G     T+R+L+   Q G +IG  GQ I+ LRN + A I ++  + LP C 
Sbjct: 196 DDDN---DLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPAC- 255

Query: 306 SAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPR-QVISVSPTYNY 365
                      ALT+ +   +  I G+   V +AL ++ + L  NP R Q + +S   + 
Sbjct: 256 -----------ALTLSH-DELLLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSS--SS 281

Query: 366 NAMHPPQSYMDPTSV-----NYVTFE-----------MLISETLVGGLIGIGGFNISRIR 420
           ++MH P + +   ++     NY                +     VGG+IG GG  I++IR
Sbjct: 316 SSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIR 281

[Close]

BLAST of Spg034453 vs. TAIR 10
Match: AT1G51580.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-07
Identity = 53/175 (30.29%), Postives = 81/175 (46.29%), Query Frame = 0


Query: 263 RLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQLALTIDY 322
           R+++ G+Q   L+   G+ I+K+R  SGA + I + +Q+P CA   +             
Sbjct: 151 RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGD------------- 210

Query: 323 VSSVTQISGDVPAVLKALEEIGNQLRVN--PPR--QVISVSPTY--NYNAM-------HP 382
              V Q++G   +V KAL  + N L+ +  PP   +     P Y   Y++M       HP
Sbjct: 211 --VVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDECPFPQPGYPPEYHSMEYHPQWDHP 270

Query: 383 PQSYMD--------PTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK 417
           P + M         P     V F +L     VG LIG GG  +  ++NESGA+IK
Sbjct: 271 PPNPMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIK 310

[Close]

BLAST of Spg034453 vs. TAIR 10
Match: AT1G14170.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-07
Identity = 57/195 (29.23%), Postives = 91/195 (46.67%), Query Frame = 0


Query: 242 EDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQL 301
           +DGT  +      G     T+R+L+   Q G +IG  GQ I+ LRN + A I ++  + L
Sbjct: 98  DDGTDDDN---DLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHL 157

Query: 302 PLCASAHESDRVVQLALTIDYVSSVTQISGDVPAVLKALEEIGNQLRVNPPR-QVISVSP 361
           P C            ALT+ +   +  I G+   V +AL ++ + L  NP R Q + +S 
Sbjct: 158 PAC------------ALTLSH-DELLLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSS 217

Query: 362 TYNYNAMHPPQSYMDPTSV-----NYVTFE-----------MLISETLVGGLIGIGGFNI 420
             + ++MH P + +   ++     NY                +     VGG+IG GG  I
Sbjct: 218 --SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKGGGFI 273

HSP 2 Score: 45.8 bits (107), Expect = 1.0e-04
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 67  HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDSE 125
           HD ++R + P K+ G +IGK G   +++R ETK+ ++I +A+   EERV+ + S + E
Sbjct: 9   HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEE 66

The following BLAST results are available for this feature:

BLAST of Spg034453 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514318.1	6.1e-148	68.47	poly(rC)-binding protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005036.1	7.9e-148	68.68	poly(rC)-binding protein 4-like isoform X1 [Cucurbita maxima]	[more]
XP_038875599.1	1.8e-147	67.60	flowering locus K homology domain-like isoform X1 [Benincasa hispida]	[more]
XP_023005037.1	5.2e-147	68.70	poly(rC)-binding protein 4-like isoform X2 [Cucurbita maxima]	[more]
KAG7025337.1	1.7e-145	69.71	RNA-binding KH domain-containing protein PEPPER [Cucurbita argyrosperma subsp. a...	[more]

BLAST of Spg034453 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR13	1.0e-04	38.98	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
P57721	1.0e-04	30.17	Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3 PE=1 SV=2	[more]
P57722	1.0e-04	30.17	Poly(rC)-binding protein 3 OS=Mus musculus OX=10090 GN=Pcbp3 PE=1 SV=3	[more]
Q9SZH4	2.3e-04	22.78	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Spg034453 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTT5	3.8e-148	68.68	poly(RC)-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1KS32	2.5e-147	68.70	poly(RC)-binding protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7T8H9	3.0e-145	67.39	RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo var. makuwa...	[more]
A0A1S3CB11	3.0e-145	67.39	RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KCF8	4.0e-145	67.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103530 PE=4 SV=1	[more]

BLAST of Spg034453 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15270.2	4.8e-10	22.68	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	4.8e-10	22.68	RNA-binding KH domain-containing protein	[more]
AT1G14170.1	4.5e-08	23.18	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	1.0e-07	30.29	RNA-binding KH domain-containing protein	[more]
AT1G14170.2	1.0e-07	29.23	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 67..142 e-value: 6.3E-9 score: 45.7 coord: 258..348 e-value: 2.2E-5 score: 33.9 coord: 380..436 e-value: 0.1 score: 21.7
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 383..418 e-value: 3.8E-5 score: 23.4 coord: 261..315 e-value: 2.0E-7 score: 30.7 coord: 72..135 e-value: 2.2E-10 score: 40.2
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 371..435 e-value: 8.3E-7 score: 30.6
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 258..351 e-value: 9.2E-13 score: 49.8
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 67..143 e-value: 6.1E-14 score: 53.4
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 68..150
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 254..348
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 375..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..61
None	No IPR available	PANTHER	PTHR10288:SF265	POLY(RC)-BINDING PROTEIN 4-LIKE	coord: 34..144
None	No IPR available	PANTHER	PTHR10288:SF265	POLY(RC)-BINDING PROTEIN 4-LIKE	coord: 241..448
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 241..448
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 34..144
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 259..343 score: 11.510467
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 381..416 score: 10.54616
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 68..134 score: 14.969395
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 71..121 e-value: 3.6076E-13 score: 62.1087
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 261..343 e-value: 2.38759E-15 score: 68.2719

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034453.1	Spg034453.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding