Spg034436 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034436
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 14392265 .. 14394168 (+)
RNA-Seq ExpressionSpg034436
SyntenySpg034436
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGAAAGGAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAATGGAAGGAAAAAAACAAGAAAACAAATCGGCAAAAGGGAAATGAAAAACAAAAAAAAAACAAAAAAGAAAGAAAATGGGAATGGACAGCAAACAACCCACCACCGCCTAAGCTAAACTCCAACCCATTTTTAGTCATTTTCAGCATTTCTCATCATTTTCCATCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTTGGGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAACCAGCCATAGCAGAATCTGAGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAAGAACTAAGAGGTGAGGTTTGATTTTCTTGCAAGTTAGTCCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCCGATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAAGAGGATCTCTGGTTTCCTCTAGTTTTTCGAACATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCATATTCAATTTCCTACAACTTTTATGAAGAATTTGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGTAGCAGAGAACCTCAAATCTGTGTTGTCTGTGTTCGAGGCATTTCTGGACGAATCGGTTGGGAATATCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTTATGTGTAGTACATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTGATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAACTAATTATGGTTCTAATGCTCGGTTTTGTTTTTTTGACAGGCCAAGAGGATATAGGTCGGGTCTACAAGCCAGGGAACTAGCTAAGACTGTGAGTGACAAAACGAATTTCGAAAATTGTTTCGAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATGAATGACACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCATGTGATTATTGATTTTCTGAAAAGTAGTTGAAATGATATCTTTTAAAGCAAAGTATGTATTAGCAAGTACTTTTTAAAGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCCTAAGTTTTACGAGAGATAACGATAAGCAGACATGTTGTAATGTTTTCATGTGATTTTCTGAGATTTCCATTTACTACATGACTGAGATATTGAGTCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGAAAAAGACGGTGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTCGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTCAATGACGAACCTGTGATGTTTTAAGAAAGCTTTTATTGTTGCACGTTTATGTTTAACGCCTTGGTTGAGCTACTTTATACTTTTAAAGTTTTATCACGTGTTCCGATTTTCGAATGTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCTGATCAAGCTCCAG

mRNA sequence

ATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAAGAACTAAGAGAGCACAAGATTTTCGAGCAAAGCAAGAGGATCTCTGGTTTCCTCTAGTTTTTCGAACATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGCATTTCTGGACGAATCGGTTGGGAATATCGTTTTCATTTCTTCAGGCCAAGAGGATATAGGTCGGGTCTACAAGCCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCTGA

Coding sequence (CDS)

ATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAAGAACTAAGAGAGCACAAGATTTTCGAGCAAAGCAAGAGGATCTCTGGTTTCCTCTAGTTTTTCGAACATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGCATTTCTGGACGAATCGGTTGGGAATATCGTTTTCATTTCTTCAGGCCAAGAGGATATAGGTCGGGTCTACAAGCCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCTGA

Protein sequence

MPTSGFLFGLSYTERTKRAQDFRAKQEDLWFPLVFRTFWGVQVESEALFGISGRIGWEYRFHFFRPRGYRSGLQARELAKTVEIELPVPDTLPTSAESS
Homology
[Close]
BLAST of Spg034436 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 0 

Query: 23  RAKQEDLWFPLVFRT--FWG-------VQVESEALFGISGR-IGWEYRFHFFRPRGYRSG 82
           R+ +E+L   L  RT  F G        QVESEALFG+  + I +   F    PRG R  
Sbjct: 84  RSNEEELPDTLHLRTSKFQGRNFIRESAQVESEALFGMVRKLIQYPTTFMNIWPRGNRPS 143

Query: 83  LQARELAKTVEIELPVPDTLPTSAESS 100
            Q  +L KTVEIELPVPDTLPTSAESS
Sbjct: 144 RQTGKLDKTVEIELPVPDTLPTSAESS 170

[Close]
BLAST of Spg034436 vs. NCBI nr
Match: KAA0066795.1 (uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK27942.1 uncharacterized protein E5676_scaffold384G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 42/93 (45.16%), Postives = 47/93 (50.54%), Query Frame = 0 

Query: 7   LFGLSYTERTKRAQDFRAKQEDLWFPLVFRTFWGVQVESEALFGISGRIGWEYRFHFFRP 66
           LFGLSY E TK                      GV V S+AL  +      + + +   P
Sbjct: 19  LFGLSYLEETKSTGSSSKPA-------------GVLVFSDALSMLEVHKS-DQKLYLVWP 78

Query: 67  RGYRSGLQARELAKTVEIELPVPDTLPTSAESS 100
           RG R  LQ REL KT  IELPVPDTLPTSAESS
Sbjct: 79  RGNRPSLQTRELDKT--IELPVPDTLPTSAESS 95

[Close]
BLAST of Spg034436 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 33/89 (37.08%), Postives = 45/89 (50.56%), Query Frame = 0 

Query: 11  SYTERTKRAQDFRAKQEDLWFPLVFRTFWGVQVESEALFGISGRIGWEYRFHFFRPRGYR 70
           S + + K    F   ++ + +P  F   W +  E  A       +      +   PRG R
Sbjct: 36  SGSAQVKSEAVFSMVRKLIQYPTTFMKIWAILDELVANLVFISSVRISNLENLEMPRGNR 95

Query: 71  SGLQARELAKTVEIELPVPDTLPTSAESS 100
             LQ  +L KTVEIELP+PDTLPTS+ESS
Sbjct: 96  PSLQIGKLEKTVEIELPMPDTLPTSSESS 124

[Close]
BLAST of Spg034436 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.2e-07
Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 0 

Query: 23  RAKQEDLWFPLVFRT--FWG-------VQVESEALFGISGR-IGWEYRFHFFRPRGYRSG 82
           R+ +E+L   L  RT  F G        QVESEALFG+  + I +   F    PRG R  
Sbjct: 84  RSNEEELPDTLHLRTSKFQGRNFIRESAQVESEALFGMVRKLIQYPTTFMNIWPRGNRPS 143

Query: 83  LQARELAKTVEIELPVPDTLPTSAESS 100
            Q  +L KTVEIELPVPDTLPTSAESS
Sbjct: 144 RQTGKLDKTVEIELPVPDTLPTSAESS 170

[Close]
BLAST of Spg034436 vs. ExPASy TrEMBL
Match: A0A5D3DWP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001370 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05
Identity = 42/93 (45.16%), Postives = 47/93 (50.54%), Query Frame = 0 

Query: 7   LFGLSYTERTKRAQDFRAKQEDLWFPLVFRTFWGVQVESEALFGISGRIGWEYRFHFFRP 66
           LFGLSY E TK                      GV V S+AL  +      + + +   P
Sbjct: 19  LFGLSYLEETKSTGSSSKPA-------------GVLVFSDALSMLEVHKS-DQKLYLVWP 78

Query: 67  RGYRSGLQARELAKTVEIELPVPDTLPTSAESS 100
           RG R  LQ REL KT  IELPVPDTLPTSAESS
Sbjct: 79  RGNRPSLQTRELDKT--IELPVPDTLPTSAESS 95

[Close]
BLAST of Spg034436 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 33/89 (37.08%), Postives = 45/89 (50.56%), Query Frame = 0 

Query: 11  SYTERTKRAQDFRAKQEDLWFPLVFRTFWGVQVESEALFGISGRIGWEYRFHFFRPRGYR 70
           S + + K    F   ++ + +P  F   W +  E  A       +      +   PRG R
Sbjct: 36  SGSAQVKSEAVFSMVRKLIQYPTTFMKIWAILDELVANLVFISSVRISNLENLEMPRGNR 95

Query: 71  SGLQARELAKTVEIELPVPDTLPTSAESS 100
             LQ  +L KTVEIELP+PDTLPTS+ESS
Sbjct: 96  PSLQIGKLEKTVEIELPMPDTLPTSSESS 124

The following BLAST results are available for this feature:
BLAST of Spg034436 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ96965.11.5e-0651.72uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa][more]
KAA0066795.11.1e-0445.16uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK... [more]
KAA0062263.13.1e-0437.08hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa][more]
BLAST of Spg034436 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034436 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BET37.2e-0751.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DWP35.2e-0545.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2F21.5e-0437.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg034436 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034436.1Spg034436.1mRNA