Spg034206 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034206
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein DOG1-like 4
Location	scaffold13: 32990381 .. 32990961 (-)
RNA-Seq Expression	Spg034206
Synteny	Spg034206

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAAAGTATGAAAATGGGGTCCTTACGAAAATGGAAAAAGTATGATAGCAGGCTGGATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCTTTTACATTCAAGGGTATGTTGGTAATTGCACAAGGGTAGATAACATCAACAAGATTCTCAATTGCTATTAATCAACCAAGTCCTCGCCCATTACCACCACTACTACGACCACCTTTACAGGCCCGCCGCCGAAGACATCTTCCAAGTGCTCTCCGCGCCATGGCTCTCCTCTTTCGAGCGAACCCTTCTCTGGATTTCCTGCTTCAAGCCTTCCATTGTCTTCCCACTCCTCGCCGCCGCTGTCAAGGACGCCGCTGCAGTCGGCCAGACTGTAGGAGGTCGAGGCAGAGGTCAGGCGGAATTAGAAGGAGTTGACTTAGGCCATGGCGAGTCTGCACGAGATGGTGGCGGCGGCGCCGATTGTGGAGCTGGCGCGGCGGACGGGGAGAGTGGTGGATGGGGAAATCTGCGAAATGGATGGTGCGATCGAGGAATTGAAGATGGGGATGTTGGGGATTTTCGATAG

mRNA sequence

ATGGGAAAAAAGCCCGCCGCCGAAGACATCTTCCAAGTGCTCTCCGCGCCATGGCTCTCCTCTTTCGAGCGAACCCTTCTCTGGATTTCCTGCTTCAAGCCTTCCATTGTCTTCCCACTCCTCGCCGCCGCTGTCAAGGACGCCGCTGCAGTCGGCCAGACTGTAGGAGGTCGAGGCAGAGGTCAGGCGGAATTAGAAGGAGTTGACTTAGGCCATGGCGAGTCTGCACGAGATGGTGGCGGCGGCGCCGATTGTGGAGCTGGCGCGGCGGACGGGGAGAGTGGTGGATGGGGAAATCTGCGAAATGGATGGTGCGATCGAGGAATTGAAGATGGGGATGTTGGGGATTTTCGATAG

Coding sequence (CDS)

ATGGGAAAAAAGCCCGCCGCCGAAGACATCTTCCAAGTGCTCTCCGCGCCATGGCTCTCCTCTTTCGAGCGAACCCTTCTCTGGATTTCCTGCTTCAAGCCTTCCATTGTCTTCCCACTCCTCGCCGCCGCTGTCAAGGACGCCGCTGCAGTCGGCCAGACTGTAGGAGGTCGAGGCAGAGGTCAGGCGGAATTAGAAGGAGTTGACTTAGGCCATGGCGAGTCTGCACGAGATGGTGGCGGCGGCGCCGATTGTGGAGCTGGCGCGGCGGACGGGGAGAGTGGTGGATGGGGAAATCTGCGAAATGGATGGTGCGATCGAGGAATTGAAGATGGGGATGTTGGGGATTTTCGATAG

Protein sequence

MGKKPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKDAAAVGQTVGGRGRGQAELEGVDLGHGESARDGGGGADCGAGAADGESGGWGNLRNGWCDRGIEDGDVGDFR

Homology

[Close]

BLAST of Spg034206 vs. NCBI nr
Match: XP_023546822.1 (protein DOG1-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-09
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKDAAAV 52
           K A ED+F+V SAPWLSS+ERTLLWIS FKPSIVF L+  AVKD  AV
Sbjct: 70  KAAGEDVFRVFSAPWLSSYERTLLWISGFKPSIVFRLVDGAVKDLTAV 117

[Close]

BLAST of Spg034206 vs. NCBI nr
Match: KAG6598757.1 (Protein ZW2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029697.1 Protein DOG1-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-09
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKDAAAV 52
           K A ED+F+V SAPWLSS+ERTLLWIS FKPSIVF L+  AVKD  AV
Sbjct: 70  KAAGEDVFRVFSAPWLSSYERTLLWISGFKPSIVFRLVDGAVKDLTAV 117

[Close]

BLAST of Spg034206 vs. NCBI nr
Match: XP_022962178.1 (protein DOG1-like 4 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-09
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKDAAAV 52
           K A ED+F+V SAPWLSS+ERTLLWIS FKPSIVF L+  AVKD  AV
Sbjct: 70  KAAGEDVFRVFSAPWLSSYERTLLWISGFKPSIVFRLVDGAVKDLTAV 117

[Close]

BLAST of Spg034206 vs. NCBI nr
Match: XP_022997257.1 (protein DOG1-like 4 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-09
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKDAAAV 52
           K A ED+F+V SAPWLSS+ERTLLWIS FKPSIVF L+  AVKD  AV
Sbjct: 70  KAAGEDVFRVFSAPWLSSYERTLLWISGFKPSIVFRLVDGAVKDLTAV 117

[Close]

BLAST of Spg034206 vs. NCBI nr
Match: KAG6598755.1 (Protein ZW2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKD 48
           K AAEDIFQVLSAPWL+SFERT LWIS FKPS++  LL AAV D
Sbjct: 64  KAAAEDIFQVLSAPWLTSFERTFLWISGFKPSLLIRLLFAAVND 107

[Close]

BLAST of Spg034206 vs. ExPASy Swiss-Prot
Match: Q9SLV1 (Protein ZW2 OS=Arabidopsis thaliana OX=3702 GN=ZW2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.4e-06
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 6   AAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKD 48
           A +DI+   S PWLSS+E+ +LWI  FKP +VF L+  +V D
Sbjct: 68  AGDDIYDFFSPPWLSSYEKLILWIGGFKPGMVFKLITTSVND 109

[Close]

BLAST of Spg034206 vs. ExPASy TrEMBL
Match: A0A6J1K4I1 (protein DOG1-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492216 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKDAAAV 52
           K A ED+F+V SAPWLSS+ERTLLWIS FKPSIVF L+  AVKD  AV
Sbjct: 70  KAAGEDVFRVFSAPWLSSYERTLLWISGFKPSIVFRLVDGAVKDLTAV 117

[Close]

BLAST of Spg034206 vs. ExPASy TrEMBL
Match: A0A6J1HE23 (protein DOG1-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462712 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKDAAAV 52
           K A ED+F+V SAPWLSS+ERTLLWIS FKPSIVF L+  AVKD  AV
Sbjct: 70  KAAGEDVFRVFSAPWLSSYERTLLWISGFKPSIVFRLVDGAVKDLTAV 117

[Close]

BLAST of Spg034206 vs. ExPASy TrEMBL
Match: A0A6J1KAY7 (protein DOG1-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492218 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.2e-09
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKD 48
           K AAEDIFQVLSAPWL+SFERT LWIS FKPS++  LL AAV D
Sbjct: 64  KAAAEDIFQVLSAPWLTSFERTFLWISGFKPSLLIRLLFAAVND 107

[Close]

BLAST of Spg034206 vs. ExPASy TrEMBL
Match: A0A6J1HCM0 (protein DOG1-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462763 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.2e-09
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKD 48
           K AAEDIFQVLSAPWL+SFERT LWIS FKPS++  LL AAV D
Sbjct: 64  KAAAEDIFQVLSAPWLTSFERTFLWISGFKPSLLIRLLFAAVND 107

[Close]

BLAST of Spg034206 vs. ExPASy TrEMBL
Match: A0A0A0LLV7 (Transcription factor HBP-1b OS=Cucumis sativus OX=3659 GN=Csa_2G372780 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 4   KPAAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKDAAAV 52
           K A ED+F+V SAPWL+S+ERTLLWIS FKPSIVF L+  AVKD   V
Sbjct: 70  KAAGEDVFRVFSAPWLTSYERTLLWISGFKPSIVFRLVDGAVKDLTPV 117

[Close]

BLAST of Spg034206 vs. TAIR 10
Match: AT1G58330.1 (transcription factor-related )

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-07
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 6   AAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKD 48
           A +DI+   S PWLSS+E+ +LWI  FKP +VF L+  +V D
Sbjct: 68  AGDDIYDFFSPPWLSSYEKLILWIGGFKPGMVFKLITTSVND 109

[Close]

BLAST of Spg034206 vs. TAIR 10
Match: AT1G09950.1 (RESPONSE TO ABA AND SALT 1 )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 16/42 (38.10%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 6   AAEDIFQVLSAPWLSSFERTLLWISCFKPSIVFPLLAAAVKD 48
           A +++F     PW +S+ + +LW+  FKPS+VF L   +V D
Sbjct: 70  AGDNVFTFFCPPWFNSYAKLILWVGDFKPSLVFKLTEVSVAD 111

The following BLAST results are available for this feature:

BLAST of Spg034206 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546822.1	3.8e-09	72.92	protein DOG1-like 4 [Cucurbita pepo subsp. pepo]	[more]
KAG6598757.1	3.8e-09	72.92	Protein ZW2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029697.1 Prote...	[more]
XP_022962178.1	3.8e-09	72.92	protein DOG1-like 4 [Cucurbita moschata]	[more]
XP_022997257.1	3.8e-09	72.92	protein DOG1-like 4 [Cucurbita maxima]	[more]
KAG6598755.1	1.9e-08	77.27	Protein ZW2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg034206 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLV1	5.4e-06	50.00	Protein ZW2 OS=Arabidopsis thaliana OX=3702 GN=ZW2 PE=2 SV=1	[more]

BLAST of Spg034206 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4I1	1.9e-09	72.92	protein DOG1-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492216 PE=4 SV=1	[more]
A0A6J1HE23	1.9e-09	72.92	protein DOG1-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462712 PE=4 SV=1	[more]
A0A6J1KAY7	9.2e-09	77.27	protein DOG1-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492218 PE=4 SV=1	[more]
A0A6J1HCM0	9.2e-09	77.27	protein DOG1-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462763 PE=4 SV=1	[more]
A0A0A0LLV7	1.6e-08	68.75	Transcription factor HBP-1b OS=Cucumis sativus OX=3659 GN=Csa_2G372780 PE=4 SV=1	[more]

BLAST of Spg034206 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G58330.1	3.8e-07	50.00	transcription factor-related	[more]
AT1G09950.1	1.8e-04	38.10	RESPONSE TO ABA AND SALT 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025422	Transcription factor TGA like domain	PFAM	PF14144	DOG1	coord: 5..42 e-value: 1.3E-9 score: 38.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..118
None	No IPR available	PANTHER	PTHR46354	FAMILY NOT NAMED	coord: 5..48
None	No IPR available	PANTHER	PTHR46354:SF1	TRANSCRIPTION FACTOR HBP-1B	coord: 5..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034206.1	Spg034206.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding