Spg034166 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034166
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	tapetum determinant 1
Location	scaffold13: 37328945 .. 37333304 (-)
RNA-Seq Expression	Spg034166
Synteny	Spg034166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACCAGTCGAGTCTCCCCTGTTGGAGGCCGCTAGAGCAAGGTCGCTGGAAGCTCAATTCAGACGCGACCTGGAATGAAAAGAGGAAATTAGGCGGGATTGGCTGGGCGATTTGAGACTCCACGGGCCGGGGTCTCTAATCGGTTTTGGTTGCGCTCAAGTCTCTCAGAGATGGTCGATCAAGAACTTAGAAGGAAAAGTTATTTTAGAGGGGTTGAAGGCTTACCAGAGTCTCGCGTCTGAGGAAATCGGTCTTCGCCAGAAGCCTCCCTTGAGATAGAATCGGATTCCGTCGAAATAGTGAAAGCAATCAATGGGGAATCGCTTGACAGATCAGAGGCGGCTCAGATTGTGAAGGAGATTGCTGATATCTCTGTTGGTCTGGAAGTCTCCGTTGCTCACTGCTGTAGGAATAGCAATGTTCTTGCCCACTCTATCGCTCGAAGCTGTAGAATCTGGGATTTTTTTGCGTTTTTTTGTCTTCCCATCGTCTGGTTCTCAGATTAGGGATGCTTTTTTGGCGGGGGATGAAAGGATCCCCCGGGTTTAATTTCGATGGTTGTAAAGAACGTGGTTGCTGTCTGTTGATGATATTTTTCTTTCTAAAAAAAAAAAAAAAACGAATACTTTGAAAGTTCTAGGACCAAAATAGAATAATCCTAGAAGTTTAGGGACCAAAATAGGATTTAAACCTTTTTTTTTTATTCTTCCTCTTTTTTCTTGTCACGCTAAAAATATCTACTTCCCTAATATTTCAGGTAATTATTAATTCGGTGCTTAATTTTTTTAAGATCACAATTTTATGTTAACGTATCAAAAGTTCTCATTTGAATACAATACTTTGAGAATAAAATTATTAATTTGTTAACATATCCTTAAACTTTTTTTCTCAAAAAAAAAAAAAATATATATATATATCCTTAAACTTTTGCTTTCATTCACTTTTTAAACATGGGAATTTGACATTTGGAAGAAATATATTTTGTTGATAGGTGGTGAAAATTGGTAATATATATATACACACACATATAGTCCCTAAACTTTTGGCTAATTATCAACTTGGTGGTCCTTAATTTTTTAAAATTCTAAATTTACACTTTATGTTTTAAAAAATGTTTGTCTATCTCTTGAAATATTTTTATTTAGTTAAGAAAAAGTTGATTGATCATTTGATCATGGTTTTATTAACACATTTAAACTCACAAATATGCCATTTAGATGCTCTTTGATACATGAGATCCAACTAATTTATACATCAAAATCTGGCCTACCATCATAACATGATAAAGTTTTTCAAGTGGCCTGTCTCTATATCCAAAAATATGATTATAAAATGATAATTCAATGAGACATAAGTTTATTTTGTTAACCATTTTTCAAAGAAAAATAGTTAAATTACAAGTTTAGTCATTAAACTTTTAGGGTCATGTCAATTTGATCCCTAAACTTTAAAAAGTGTCTAATAAATCTTTGAATTTTCAATTTTGTGTCTTATATATATCTGAACTTTAAAAACGTTTAATAAGTCTTCGAATTTTCAATTTCGTGTCAAATTGAATTTTATGCCTATTAGGACTCTAAACTTCCAATTTTGTATCTAGGCTTGTAAATTTTAAAAAAATATCGAATAGGTCAAAGACATAATTATTGGACACAAAATTGAAAGTTGAGTGACTTATTGGACACAAAAGTAAAAGTTTAAGGATCTACTAGATACTTTAAGGATTTATTGGACACAAAATTGAACCTTCAGGAACCTATTTAAAAATTTTTAAATTTCAGTGACCAAATTCCCTCAAGATGGTCAAGATGGTGCCTCTTTGGGTTCACCTTTCTTGGATCGGATCCCAATTTTTTTTATTGGACCGAATACCCGTTTGGGTTTTTATGGGTTCTGATACCATATCAAATAACATGGGCTTCCATCTCAAAACCAATTGGCAATGAGTGGAGTGACCCTTGTAGCTTATAAATTGTGAGGTCTCCACTCATCTTTTCAATGTGGGATCTTCAACAGTTTCCAAAAACTTGTTTTTGTTTTTATAATTTGGCCAGAAATTGAAACAGATCCTTAACAAAGATAAAAACCATTGTAGGAAATTTAAGGAGAAAACAAACCTAGTTTTTTTTTTTTAAAAAAAAAAATCAAATGATTATCAAACGGACGATAAAGAACTAAATTTGTAATTTAGAAATAAAATAAATTGAAAGAGCCCAATTAAAAAAAAATTAAGGACTAAACAGAGATGACGACCTAATAAATTAGTGGCGATCTAATGTATTTAGCAAAACATAATAAGAAGTTACGACATACTCAATGAAAAAAACTAGGGGTGTTCATCTTCAGACCGAAAACCGACACGAAAGACCATACCAACGACGACGGTTCGGTCGGCATCGGTTCTTACATTGGGGAGACCGGTCGGTCGGTCGGTCGGCCAAACAATTTTACACATAACCGACCGACCGACAGATATATTTATACATATAAAAAAAACCATTTTTTTTAGAACACATAACCGACCGACCGTCGTTCTTCATCTCAGTTCTCATGACCTTAAAAAAAACCAACTGAACCGACCAACCAAACCGACCGTTCGGTCAGTAGGCTGGCAACACCCATTCAAAGTCGTCGGTTTCCAGATTTTTGGAAAACTGACCGACCGATGAACACCCCTAAAAAAAACCACGAGAGAGAATAAATACAAAATCCTAAAAAGTAAAAATGATGTTCATGTACATACAGCTGATAAAATTATGCGTATAAGAAAAATTTGCTGTAGATTTGATTCTGATTATGGAGAAAATATTCAAAATTGAACATCAAATTTAATTTTCAAATAAATGTTGAATAATATATAATTTACAAACTAAACTTGATTGTGATTACAAGGGCATAATTGGAGACGACTGTTACAAAAAATAAGTCAACAGTAATAAAGTTGTGAATATTCTAAAGACAACGAAAAATCTCTGTAATTTATTTTCTGAAAAACGTCTAATTTATGACAATTTATGTAATAAAAATAGCATGCCTTTTGTCATAAACTCGCACATTATATATATATATACACACGGACGCACAAACAAAGCACTGTCTTTAACAGCACTTTCACCAATATTTCCTCTTTCATTTTCAAGATTTACTGCGATGGTTAAGCCTACAGCTTCTTCTTCCTTGTTTGGAGTTTCAATTTTTTGCCATTTCCTTCTACTTGGATTATATTTTACAGGTACATTTTATTATGTTGGAGAGCATTTTGAGTATTGTTTCAATAGAATTTGACATGGGAATTTGAAGATCTAATGAACTATTTAGATCAACTATTAAAAGTTTGAGTCTATACACGTATGTTTGATGTTCGTAATATCTATTTGTTTTTCTTAAATTTATGAACATTTTGAAACTCGTGTCTTTCAAGTTACATGTTAACTTCTGTAAACCACAAATCTTCCACACATCTTATAGTGTTTAAATCCTATTTTCCACGCCGATATCAAAATCATTAAGAAAGATCAACCATAAAGGAAAAGAATTAAACCAACAAAATAGAAGTGTTGGGTTCACATGCCCTTCTAGCCAAAATGTGGGCCATATGTTATTGTTTCTTTTGGAAATATGGGTAACAGCTTCCAAAGTTGAGGGTTGATATCATTCGAAGCGCTACATTCACAAAATGTCCAATTTCTGTGGCTTCTCCTTCCTCTCCCGGGAGTAGATAGACGACTTGAAGAAAGTCCAACTCGAGAATCATCCTGGGGGGAGGTCATTGGAACCGATTTCAGCCCTTCGACTACTGTTGGGGCTTCCAACCAACTGATTTTTCATTGCCAAGCGATCCAAATCTTTTTTTTTTTTTTTGGGAGAGAAATCCAAATCAATATTAAACATATATGAATCACACAAACGATATAATTTCTGACCGAACCGTTACTAATGAAACATTTCATTTTGATCATCTATAACAATGTTTCATTTATTTATTTGTTTTAAAATGGTGACTGATAATATTGGTGTATGATTTAGGTGGAAAGAGCCAAGAGCACAAATGTGAAAACACTGACATAGCAATAACACAAGGAGAAGGCTCGCCGCAGTTCAATGGCATCCCTACGTACATCGTGGAGATAACTAACCAGTGCCGAACCGGCTGCAGGGTTTCCGGTCTGCATCTGAAATGCGGTTGGTTCAGCTCGGCCAAGTTGATAAACCCATCGGTTTTTAAGCGCATTGCCTTCGACGATTGCCTTGTCAACAGTGGAAGGGTCATACCTCCTGGCACTACAGTTTCGTTTCAATATGCTACCACCTTCAAGTTTCCACTCTCTGTTTCCTCCATTGTATGCTCCAAATGA

mRNA sequence

ATGGAGAACCAGTCGAGAAATCGGTCTTCGCCAGAAGCCTCCCTTGAGATAGAATCGGATTCCGTCGAAATAGTGAAAGCAATCAATGGGGAATCGCTTGACAGATCAGAGGCGGCTCAGATTGTGAAGGAGATTGCTGATATCTCTGTTGGTCTGGAAGTCTCCGTTGCTCACTGCTGTAGGAATAGCAATGTTCTTGCCCACTCTATCGCTCGAAGCTGTGGAAAGAGCCAAGAGCACAAATGTGAAAACACTGACATAGCAATAACACAAGGAGAAGGCTCGCCGCAGTTCAATGGCATCCCTACGTACATCGTGGAGATAACTAACCAGTGCCGAACCGGCTGCAGGGTTTCCGGTCTGCATCTGAAATGCGGTTGGTTCAGCTCGGCCAAGTTGATAAACCCATCGGTTTTTAAGCGCATTGCCTTCGACGATTGCCTTGTCAACAGTGGAAGGGTCATACCTCCTGGCACTACAGTTTCGTTTCAATATGCTACCACCTTCAAGTTTCCACTCTCTGTTTCCTCCATTGTATGCTCCAAATGA

Coding sequence (CDS)

ATGGAGAACCAGTCGAGAAATCGGTCTTCGCCAGAAGCCTCCCTTGAGATAGAATCGGATTCCGTCGAAATAGTGAAAGCAATCAATGGGGAATCGCTTGACAGATCAGAGGCGGCTCAGATTGTGAAGGAGATTGCTGATATCTCTGTTGGTCTGGAAGTCTCCGTTGCTCACTGCTGTAGGAATAGCAATGTTCTTGCCCACTCTATCGCTCGAAGCTGTGGAAAGAGCCAAGAGCACAAATGTGAAAACACTGACATAGCAATAACACAAGGAGAAGGCTCGCCGCAGTTCAATGGCATCCCTACGTACATCGTGGAGATAACTAACCAGTGCCGAACCGGCTGCAGGGTTTCCGGTCTGCATCTGAAATGCGGTTGGTTCAGCTCGGCCAAGTTGATAAACCCATCGGTTTTTAAGCGCATTGCCTTCGACGATTGCCTTGTCAACAGTGGAAGGGTCATACCTCCTGGCACTACAGTTTCGTTTCAATATGCTACCACCTTCAAGTTTCCACTCTCTGTTTCCTCCATTGTATGCTCCAAATGA

Protein sequence

MENQSRNRSSPEASLEIESDSVEIVKAINGESLDRSEAAQIVKEIADISVGLEVSVAHCCRNSNVLAHSIARSCGKSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVCSK

Homology

[Close]

BLAST of Spg034166 vs. NCBI nr
Match: GFZ17345.1 (tapetum determinant protein [Actinidia rufa])

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-32
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  +DI ITQG  SP  NGIPTY VEI N C +GC +SG+HL CGWFSSA+LINP +FK
Sbjct: 80  KCSKSDIVITQGPTSPLPNGIPTYTVEIMNACVSGCNISGVHLSCGWFSSARLINPRIFK 139

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ F+DCLVN G+ +  G T+SFQYA TF++PLSVSS+VC
Sbjct: 140 RLRFNDCLVNDGKRLVNGRTISFQYANTFRYPLSVSSVVC 179

[Close]

BLAST of Spg034166 vs. NCBI nr
Match: XP_019253597.1 (PREDICTED: protein TAPETUM DETERMINANT 1-like [Nicotiana attenuata] >XP_019253598.1 PREDICTED: protein TAPETUM DETERMINANT 1-like [Nicotiana attenuata] >OIS98832.1 protein tapetum determinant 1 [Nicotiana attenuata])

HSP 1 Score: 147.9 bits (372), Expect = 8.5e-32
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FK
Sbjct: 78  KCSKTDIVINQGPTAPLPSGIPTYTVEIMNVCVSGCDISGIHLKCGWFSSARLINPRIFK 137

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ FDDCLVN G+ +  G TVSFQYA TF++PLSVSS++C
Sbjct: 138 RLHFDDCLVNDGKPLINGHTVSFQYANTFRYPLSVSSVIC 177

[Close]

BLAST of Spg034166 vs. NCBI nr
Match: KAF7135610.1 (hypothetical protein RHSIM_Rhsim08G0193300 [Rhododendron simsii])

HSP 1 Score: 147.9 bits (372), Expect = 8.5e-32
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 79  EHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSV 138
           + KC  +DI I QG  SP  +GIPTY VEI N C TGC +SG+HL CGWFSSA+LINP V
Sbjct: 113 DRKCSTSDIVINQGPTSPLPSGIPTYTVEIMNVCVTGCDISGIHLSCGWFSSARLINPRV 172

Query: 139 FKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           FKR+ ++DCLVN+GR +  G TVSFQYA TF++PLSVSS++C
Sbjct: 173 FKRLRYNDCLVNAGRPLVNGRTVSFQYANTFRYPLSVSSVIC 214

[Close]

BLAST of Spg034166 vs. NCBI nr
Match: XP_016469596.1 (PREDICTED: protein TAPETUM DETERMINANT 1-like [Nicotiana tabacum])

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-31
Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FK
Sbjct: 79  KCSKTDIVINQGPTAPLPSGIPTYTVEIMNVCVSGCDISGIHLKCGWFSSARLINPRIFK 138

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Sbjct: 139 RLHFDDCLVNDGKPLINGHTISFQYANTFRYPLSVSSVIC 178

[Close]

BLAST of Spg034166 vs. NCBI nr
Match: XP_009757809.1 (PREDICTED: uncharacterized protein LOC104210578 isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-31
Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FK
Sbjct: 79  KCSKTDIVINQGPTAPLPSGIPTYTVEIMNVCVSGCDISGIHLKCGWFSSARLINPRIFK 138

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Sbjct: 139 RLHFDDCLVNDGKPLINGHTISFQYANTFRYPLSVSSVIC 178

[Close]

BLAST of Spg034166 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.0e-32
Identity = 60/101 (59.41%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC++TDI + Q    P  NGIP Y+VEITNQC +GC +S +H+ CGWFSSAKLINP VFK
Sbjct: 76  KCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFK 135

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVCS 182
           RI +DDCLVN+G+ +P G+T+SF YA TF + LSV+ + C+
Sbjct: 136 RIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176

[Close]

BLAST of Spg034166 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-27
Identity = 49/99 (49.49%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 82  CENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKR 141
           C   DI + QG  +P  +G+P+Y VEI N C + C ++ +H+ CGWFSS +L+NP VF+R
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 142 IAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           + +DDCLVN G+ + PG ++SFQYA +F +PLSV+S+ C
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

[Close]

BLAST of Spg034166 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-23
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 86  DIAITQGEGSPQFNGIPTYIVEITNQCRTG------CRVSGLHLKCGWFSSAKLINPSVF 145
           DIAI QG  +P  +G+P Y V++ N+C  G      C ++G+H++CGWFSS  L++P VF
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 146 KRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           +R+  DDCL+N GR +  G TVSF+Y  +F + LSVS   C
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

[Close]

BLAST of Spg034166 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 76  KSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLIN 135
           + Q   C   ++ + Q       +GIPTY VEI N C T C V  +H+ CG F+SA+L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 136 PSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           PS F+RI F+DCLV  G  + P   VSFQY+ +F +PL+V+++ C
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of Spg034166 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 30/101 (29.70%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 75  GKSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLI 134
           GKS E     T +   +G+          + VE+ N+C   C +  L LKC  F  + L+
Sbjct: 28  GKSSEPAVRQTQVKWREGK---------KFRVEVMNKCPM-CPIINLRLKCQGFPQS-LV 87

Query: 135 NPSVFKRIAFD--DCLVNSGRVIPPGTTVSFQYATTFKFPL 174
           +P+  + ++    +C+VN G  + P  T+SF Y+ T +F L
Sbjct: 88  DPTFLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFAL 117

[Close]

BLAST of Spg034166 vs. ExPASy TrEMBL
Match: A0A7J0H2V1 (Tapetum determinant protein OS=Actinidia rufa OX=165716 GN=Acr_26g0006150 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-32
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  +DI ITQG  SP  NGIPTY VEI N C +GC +SG+HL CGWFSSA+LINP +FK
Sbjct: 80  KCSKSDIVITQGPTSPLPNGIPTYTVEIMNACVSGCNISGVHLSCGWFSSARLINPRIFK 139

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ F+DCLVN G+ +  G T+SFQYA TF++PLSVSS+VC
Sbjct: 140 RLRFNDCLVNDGKRLVNGRTISFQYANTFRYPLSVSSVVC 179

[Close]

BLAST of Spg034166 vs. ExPASy TrEMBL
Match: A0A1J6IUM0 (Protein tapetum determinant 1 OS=Nicotiana attenuata OX=49451 GN=TPD1_1 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.1e-32
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FK
Sbjct: 78  KCSKTDIVINQGPTAPLPSGIPTYTVEIMNVCVSGCDISGIHLKCGWFSSARLINPRIFK 137

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ FDDCLVN G+ +  G TVSFQYA TF++PLSVSS++C
Sbjct: 138 RLHFDDCLVNDGKPLINGHTVSFQYANTFRYPLSVSSVIC 177

[Close]

BLAST of Spg034166 vs. ExPASy TrEMBL
Match: A0A1S3ZZ54 (protein TAPETUM DETERMINANT 1-like OS=Nicotiana tabacum OX=4097 GN=LOC107791947 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.4e-32
Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FK
Sbjct: 79  KCSKTDIVINQGPTAPLPSGIPTYTVEIMNVCVSGCDISGIHLKCGWFSSARLINPRIFK 138

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Sbjct: 139 RLHFDDCLVNDGKPLINGHTISFQYANTFRYPLSVSSVIC 178

[Close]

BLAST of Spg034166 vs. ExPASy TrEMBL
Match: A0A1U7V6E2 (uncharacterized protein LOC104210578 isoform X2 OS=Nicotiana sylvestris OX=4096 GN=LOC104210578 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.4e-32
Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FK
Sbjct: 79  KCSKTDIVINQGPTAPLPSGIPTYTVEIMNVCVSGCDISGIHLKCGWFSSARLINPRIFK 138

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Sbjct: 139 RLHFDDCLVNDGKPLINGHTISFQYANTFRYPLSVSSVIC 178

[Close]

BLAST of Spg034166 vs. ExPASy TrEMBL
Match: A0A1U7UUC7 (uncharacterized protein LOC104210578 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104210578 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.4e-32
Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FK
Sbjct: 80  KCSKTDIVINQGPTAPLPSGIPTYTVEIMNVCVSGCDISGIHLKCGWFSSARLINPRIFK 139

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           R+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Sbjct: 140 RLHFDDCLVNDGKPLINGHTISFQYANTFRYPLSVSSVIC 179

[Close]

BLAST of Spg034166 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-33
Identity = 60/101 (59.41%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 81  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFK 140
           KC++TDI + Q    P  NGIP Y+VEITNQC +GC +S +H+ CGWFSSAKLINP VFK
Sbjct: 76  KCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFK 135

Query: 141 RIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVCS 182
           RI +DDCLVN+G+ +P G+T+SF YA TF + LSV+ + C+
Sbjct: 136 RIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176

[Close]

BLAST of Spg034166 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-28
Identity = 49/99 (49.49%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 82  CENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKR 141
           C   DI + QG  +P  +G+P+Y VEI N C + C ++ +H+ CGWFSS +L+NP VF+R
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 142 IAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC 181
           + +DDCLVN G+ + PG ++SFQYA +F +PLSV+S+ C
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

[Close]

BLAST of Spg034166 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05
Identity = 30/101 (29.70%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 75  GKSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLI 134
           GKS E     T +   +G+          + VE+ N+C   C +  L LKC  F  + L+
Sbjct: 28  GKSSEPAVRQTQVKWREGK---------KFRVEVMNKCPM-CPIINLRLKCQGFPQS-LV 87

Query: 135 NPSVFKRIAFD--DCLVNSGRVIPPGTTVSFQYATTFKFPL 174
           +P+  + ++    +C+VN G  + P  T+SF Y+ T +F L
Sbjct: 88  DPTFLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFAL 117

The following BLAST results are available for this feature:

BLAST of Spg034166 vs. NCBI nr


Match Name	E-value	Identity	Description
GFZ17345.1	3.8e-32	65.00	tapetum determinant protein [Actinidia rufa]	[more]
XP_019253597.1	8.5e-32	65.00	PREDICTED: protein TAPETUM DETERMINANT 1-like [Nicotiana attenuata] >XP_01925359...	[more]
KAF7135610.1	8.5e-32	63.73	hypothetical protein RHSIM_Rhsim08G0193300 [Rhododendron simsii]	[more]
XP_016469596.1	1.1e-31	64.00	PREDICTED: protein TAPETUM DETERMINANT 1-like [Nicotiana tabacum]	[more]
XP_009757809.1	1.1e-31	64.00	PREDICTED: uncharacterized protein LOC104210578 isoform X2 [Nicotiana sylvestris...	[more]

BLAST of Spg034166 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6TLJ2	4.0e-32	59.41	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
Q1G3T1	2.2e-27	49.49	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
Q2QR54	2.6e-23	46.53	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
Q8S6P9	2.0e-20	42.86	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
A8MS78	1.6e-04	29.70	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Spg034166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0H2V1	1.8e-32	65.00	Tapetum determinant protein OS=Actinidia rufa OX=165716 GN=Acr_26g0006150 PE=4 S...	[more]
A0A1J6IUM0	4.1e-32	65.00	Protein tapetum determinant 1 OS=Nicotiana attenuata OX=49451 GN=TPD1_1 PE=4 SV=...	[more]
A0A1S3ZZ54	5.4e-32	64.00	protein TAPETUM DETERMINANT 1-like OS=Nicotiana tabacum OX=4097 GN=LOC107791947 ...	[more]
A0A1U7V6E2	5.4e-32	64.00	uncharacterized protein LOC104210578 isoform X2 OS=Nicotiana sylvestris OX=4096 ...	[more]
A0A1U7UUC7	5.4e-32	64.00	uncharacterized protein LOC104210578 isoform X1 OS=Nicotiana sylvestris OX=4096 ...	[more]

BLAST of Spg034166 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24972.1	2.8e-33	59.41	tapetum determinant 1	[more]
AT1G32583.1	1.6e-28	49.49	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G05835.1	1.1e-05	29.70	PHD finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 15..74 e-value: 2.4E-8 score: 33.8
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 68..181
None	No IPR available	PANTHER	PTHR33184:SF67	PROTEIN TAPETUM DETERMINANT 1	coord: 68..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034166.1	Spg034166.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity