Spg034055 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034055
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Zinc finger protein
Location	scaffold13: 36591743 .. 36593524 (+)
RNA-Seq Expression	Spg034055
Synteny	Spg034055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACCTCTTGGTCGAGAATACAAGCCAATTACCACTGAACTATACTCGTTTTTGGCAGAGACCAAAAGAGATTTGATTTTTTTTTTTCTAAAGGAAAAAACCTAAAACCGCCAGTGAGTCAGTGACTAATTGGCAAGCCAAAACCTCGTTTTATTCTTCTCGATCCTCGAGAAGAAAAAAAACAAAAAAAACAAAAGAACAAAAAAGCCCAGTTCACCGGTATAAAAACCACCATGACCGGCTGGTTCACCAGAGAAACGTGATCGATCAGGCCATTAAAAACCACCACACCACCACTTCAGACTTCAGCCTTCAACTTCACGCACAAGGTAAGCCTTTCGGTTACTTCAAACAAATTTCCATTTTCCCTTCAAACCCTAAACTTCCAAATTCGGGATTTTCAAAAATCTTTGCAGGATGAGCCGCCCGGGGGATTGGAATTGCAGGTCCTGCAACCATCTCAACTTCCAACGGCGGGACTCCTGTCAGCGCTGTGGAGACCCTAGGGCTGACTTCGGCGGCGGCTTCGGCGGCGGAAGAGTTGGTTCTTCGTCCTTTGGTTTCACCACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGTCTCCAAGGATGAGGCTTCCTCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAGCCTTCCCAATTTTACCCTAAATTTCATTAATTTTTTTTCTATTTTAGTATTTCAACTTTTAAAATATACGATCTGATTCTAAACTTTCAAATTCTCTATTTTAGTTATTTCAGCCTCAATCAATTTCGATAGCTCAAAACATATATTCATATCAGCATGTTAATACATAGTTTACAGTCAAATTATACATTAAAATAGTCAAAATAAGCATAGTTCTTAGATTGAACTAAAAAGAAAATTGTACTAAAATAAAACAAATGAAATTTTCAATTAATTTTTTTTTGGGATTTAAGCTTTATATTATATCATGAAATTGTCCGATGAGTCGTTTATATTTGGATGGAACGACAGATCGGATTGTAACGAGCATAACTTTGCCAGTAGAAGGGAATGCTTCAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAGAGGTAATTAATTAATTTCCTTAAACGCAGAAACAAATTACCATATTTATAAATTGATGATCGGTTATATATAAATATATATACCATCGTTTTATTTTTATATAAAAAAATAGAAAACGGAGTAAATTGACTAATAAGTGGGATTTTTTTTTTTAATTAGTTATTGAATTATAATGTCTAATACTATTATTTCGGGATTTTTTTTTTTTTTTTCATTTTTTCCAGGTGGTGCAAATGGAAGGAATAAATTCTAGCTAGAAAGAAGAGGAGAGTTTCAATTCCCATGATATATCTGGACGTCGTCGTTTTGTTTTTTGTACCCTGTCTATTTTTCAGTTTCAAAAGTGATTTAAGTGTCTCCTTTTTGACGAGGGAGCTTTTAATTTGGAAGAAGTATGGGATTTCTGCATGCATGCAGAAAGACTTTGGCAGTAGCATAAATTTTAATGAGGCCCCCTCTCTTTGTATCCAATTTTCTAATTTATATAATTAGTACCCATCTTTCATATTCTATTAAATTGGTAACTTTCACTTTATGTTTATGTGTAT

mRNA sequence

ATGAGCCGCCCGGGGGATTGGAATTGCAGGTCCTGCAACCATCTCAACTTCCAACGGCGGGACTCCTGTCAGCGCTGTGGAGACCCTAGGGCTGACTTCGGCGGCGGCTTCGGCGGCGGAAGAGTTGGTTCTTCGTCCTTTGGTTTCACCACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGTCTCCAAGGATGAGGCTTCCTCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGTAACGAGCATAACTTTGCCAGTAGAAGGGAATGCTTCAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAG

Coding sequence (CDS)

ATGAGCCGCCCGGGGGATTGGAATTGCAGGTCCTGCAACCATCTCAACTTCCAACGGCGGGACTCCTGTCAGCGCTGTGGAGACCCTAGGGCTGACTTCGGCGGCGGCTTCGGCGGCGGAAGAGTTGGTTCTTCGTCCTTTGGTTTCACCACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGTCTCCAAGGATGAGGCTTCCTCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGTAACGAGCATAACTTTGCCAGTAGAAGGGAATGCTTCAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAG

Protein sequence

MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

Homology

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BLAST of Spg034055 vs. NCBI nr
Match: XP_023002539.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 1.4e-83
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADF-GGGFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADF GGG+GGGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCG SKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Spg034055 vs. NCBI nr
Match: KAG6585459.1 (Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319.7 bits (818), Expect = 1.4e-83
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1    MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
            MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG G+GGGR GSSSFGFTTGPDVRPGD
Sbjct: 971  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGD 1030

Query: 61   WYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
            WYCAVANCGAHNFASRSICFKCG SKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 1031 WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 1090

Query: 121  ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
            ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 1091 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 1124

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BLAST of Spg034055 vs. NCBI nr
Match: KAG7020377.1 (SPAC17H9.04c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.4 bits (812), Expect = 6.8e-83
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG G+GGGR GSS+FGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSTFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCG SKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECF+CNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFKCNAPRDSNSKSPYS 154

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BLAST of Spg034055 vs. NCBI nr
Match: XP_023538151.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.4 bits (812), Expect = 6.8e-83
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG  +GGGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAAYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCG SKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Spg034055 vs. NCBI nr
Match: XP_022951649.1 (TATA-binding protein-associated factor 2N-like [Cucurbita moschata])

HSP 1 Score: 316.6 bits (810), Expect = 1.2e-82
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG G+GGGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCG SKDEAS+AAYDGDL+R+RGFNFGGASN PGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNCPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Spg034055 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-11
Identity = 53/152 (34.87%), Postives = 64/152 (42.11%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVRPGDWYC 62
           RPGDWNC  C   NFQRR SC RC  P        G   V +++   T  PD   G+ Y 
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFP--------GPTHVSAATGSNTFSPDFPYGNSY- 402

Query: 63  AVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFN----------FGGASNRP 122
              N  +H  A+       G S   ++      DL    G N          FGG  N P
Sbjct: 403 --GNGSSHFIAN------YGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGG--NVP 462

Query: 123 GWKSGDWICARSDCNEHNFASRRECFRCNAPR 145
            +++GDW C    C  HNFA    C RC A R
Sbjct: 463 -FRAGDWKCGSEGCGYHNFAKNVCCLRCGASR 474

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BLAST of Spg034055 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.5e-05
Identity = 36/111 (32.43%), Postives = 44/111 (39.64%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVRPGDWYC 62
           R GDW C SCN+ NF  R+ C RC  P+ D  G  GGG  G    G   G   R  D   
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGND--- 334

Query: 63  AVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPG 114
                G   + +R    + G S+         G  +R    N GG   R G
Sbjct: 335 --RGSGGGGYHNRD---RGGNSQGGGGGGGGGGGYSRFNDNNGGGRGGRGG 377

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BLAST of Spg034055 vs. ExPASy Swiss-Prot
Match: P32770 (Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NRP1 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 3.8e-04
Identity = 18/27 (66.67%), Postives = 19/27 (70.37%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDP 30
           RPGDWNC SC   NFQRR +C RC  P
Sbjct: 355 RPGDWNCPSCGFSNFQRRTACFRCSFP 381

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BLAST of Spg034055 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-04
Identity = 30/87 (34.48%), Postives = 37/87 (42.53%), Query Frame = 0


Query: 5  GDWNC--RSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVR----PG 64
          GDW C  + C ++NF RR SC RCG  +          + G +  G T     R      
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMM---KAGGTEIGKTLAEKSRGLFSAN 70

Query: 65 DWYCAVANCGAHNFASRSICFKCGVSK 86
          DW C    CG  N+A RS C  C   K
Sbjct: 71 DWQC--KTCGNVNWARRSECNMCNTPK 92

[Close]

BLAST of Spg034055 vs. ExPASy TrEMBL
Match: A0A6J1KQR0 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111496351 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.6e-84
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADF-GGGFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADF GGG+GGGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCG SKDEAS+AAYDGDL+R+RGFNFGGASNRPGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Spg034055 vs. ExPASy TrEMBL
Match: A0A6J1GJE4 (TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=LOC111454402 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 5.6e-83
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GFGGGRVGSSSFGFTTGPDVRPGD 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG G+GGGR GSSSFGFTTGPDVRPGD
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGD 60

Query: 61  WYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDW 120
           WYCAVANCGAHNFASRSICFKCG SKDEAS+AAYDGDL+R+RGFNFGGASN PGWKSGDW
Sbjct: 61  WYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNCPGWKSGDW 120

Query: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 ICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Spg034055 vs. ExPASy TrEMBL
Match: A0A0A0LLW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.3e-83
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGG-FGGGRV-GSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGG +GGGRV GSSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCG +KDE S+AAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 200

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 201 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 235

[Close]

BLAST of Spg034055 vs. ExPASy TrEMBL
Match: A0A1S3BBL4 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103488288 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.3e-83
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGG-FGGGRV-GSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGG +GGGRV GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCG +KDE S+AAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

[Close]

BLAST of Spg034055 vs. ExPASy TrEMBL
Match: A0A6J1BUS6 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111004930 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.2e-79
Identity = 138/155 (89.03%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGG--RVGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG  GG  RVGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPG 60

Query: 61  DWYCAVANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGD 120
           DWYCA+ NCGAHNFASRSICFKCG  KD+AS+ AYDGD+ RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154
           WICARSDCNEHNFASRRECFRCNAPRDSN  SPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNGNSPYS 155

[Close]

BLAST of Spg034055 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 209.1 bits (531), Expect = 2.4e-54
Identity = 105/168 (62.50%), Postives = 116/168 (69.05%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG------GFGGGRVGSSSFGFTTGPD 60
           MSRPGDWNCRSC+HLNFQRRDSCQRCGD R+  GG      G  GGR   S+FGFTTG D
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGR-AMSAFGFTTGSD 60

Query: 61  VRPGDWYCAVANCGAHNFASRSICFKCGVSKDEASS----------AAYDGDLTRMRGFN 120
           VRPGDWYC V NCG HNFASRS CFKCG  KDE  +          A +D D+ R R   
Sbjct: 61  VRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPG 120

Query: 121 FGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY 153
            GG   R  WKSGDWIC R  CNEHNFASR ECFRCNAPRD ++++ +
Sbjct: 121 NGG---RSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTSF 164

[Close]

BLAST of Spg034055 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 207.2 bits (526), Expect = 9.2e-54
Identity = 107/171 (62.57%), Postives = 122/171 (71.35%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPR-----ADFGGGFGGGRVGSSSFGFTTGPDV 60
           M+RPGDWNCR C+HLNFQRRDSCQRC +PR      D   GF GGR  SSSFGF TGPDV
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGF-GGRPVSSSFGFNTGPDV 60

Query: 61  RPGDWYCAVANCGAHNFASRSICFKCGVSKDE--ASSAA-----YDGDLTRMRG-FNFGG 120
           RPGDWYC + +CG HNFA+RS CFKCG +KDE   SSAA      D ++   RG F FGG
Sbjct: 61  RPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGG 120

Query: 121 ASN------RPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY 153
           +S+      R  WKSGDWIC RS CNEHNFASR ECFRCNAP++  ++ PY
Sbjct: 121 SSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEPPY 170

[Close]

BLAST of Spg034055 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-33
Identity = 64/141 (45.39%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 5   GDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVRPGDWYCAV 64
           GDW C +C H NF++R+SCQ+CG P+      FGG  V +  +  T   +V  GDWYC  
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK------FGGVDVSTYLYNRT---EVMAGDWYCGA 65

Query: 65  ANCGAHNFASRSICFKCGVSKDEASSAAYDGDLTRMRGFNFGGASNRPGWKSGDWICARS 124
            NCG+HN+ASR+ C++CG+ K E +   Y     +M  +   GA+  PGWK+GDW+C R 
Sbjct: 66  LNCGSHNYASRTSCYRCGMIKVEYTEQYYG---AQMVAYGNDGAACPPGWKTGDWVCPRV 125

Query: 125 DCNEHNFASRRECFRCNAPRD 146
            C  HN+ASR ECF+C   RD
Sbjct: 126 GCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Spg034055 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-14
Identity = 56/165 (33.94%), Postives = 71/165 (43.03%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPD----VRPG 62
           R GDW C  C + N+  R  C RC  PR                    T P+     R G
Sbjct: 5   REGDWECLGCRNRNYAFRSFCNRCKQPRLIMDN--------------NTSPNSKWLPRIG 64

Query: 63  DWYCAVANCGAHNFASRSICFKCGVSKDEA--SSAAYDGD--LTRMRGFNFGGAS-NRPG 122
           DW C    C  +N+ASR  C KCG SK+ A  S+ A  G    T +  F  G  S ++PG
Sbjct: 65  DWIC--TGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPG 124

Query: 123 -----------------WKSGDWICARSDCNEHNFASRRECFRCN 142
                            W+SGDWIC    C  HN++SR +C +CN
Sbjct: 125 SLLAFSNATNQASVHKEWRSGDWICR---CGFHNYSSRIQCKKCN 150

[Close]

BLAST of Spg034055 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-07
Identity = 28/92 (30.43%), Postives = 39/92 (42.39%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGFGGGRVGSSSFGFTTGPDVRPGDWYC 62
           + GDW C++CN LNF +   C RC D                      T   + PG+W C
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDK--------------------PTLRQINPGEWEC 338

Query: 63  AVANCGAHNFASRSICFKCGVSKDEASSAAYD 95
              +C   NF   SIC KC   + +A++   D
Sbjct: 339 --ESCNYINFRRNSICLKCDHKRQKAANVTPD 348

The following BLAST results are available for this feature:

BLAST of Spg034055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002539.1	1.4e-83	94.81	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]	[more]
KAG6585459.1	1.4e-83	94.81	Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp...	[more]
KAG7020377.1	6.8e-83	93.51	SPAC17H9.04c [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023538151.1	6.8e-83	94.16	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]	[more]
XP_022951649.1	1.2e-82	94.16	TATA-binding protein-associated factor 2N-like [Cucurbita moschata]	[more]

BLAST of Spg034055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	3.2e-11	34.87	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	3.5e-05	32.43	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
P32770	3.8e-04	66.67	Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	[more]
Q5ZLX5	5.0e-04	34.48	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]

BLAST of Spg034055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KQR0	6.6e-84	94.81	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GJE4	5.6e-83	94.16	TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0LLW7	7.3e-83	94.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1	[more]
A0A1S3BBL4	7.3e-83	94.19	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1BUS6	2.2e-79	89.03	uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=367...	[more]

BLAST of Spg034055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	2.4e-54	62.50	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	9.2e-54	62.57	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	4.0e-33	45.39	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	4.2e-14	33.94	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	2.2e-07	30.43	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 5..29 e-value: 7.3E-6 score: 35.5 coord: 117..143 e-value: 1.6E-5 score: 34.3 coord: 58..84 e-value: 2.1E-6 score: 37.3
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 115..144 e-value: 6.7E-9 score: 34.9 coord: 56..82 e-value: 2.0E-4 score: 20.6 coord: 3..29 e-value: 6.5E-4 score: 19.0
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 119..140
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 60..81
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 56..87 score: 9.777556
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 115..146 score: 10.579303
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.969523
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..32 e-value: 2.2E-10 score: 41.6 coord: 51..88 e-value: 1.2E-12 score: 48.9 coord: 108..147 e-value: 1.3E-11 score: 45.5
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..151
None	No IPR available	PANTHER	PTHR23111:SF26	RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN	coord: 1..151
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..31
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 109..147
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 52..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034055.1	Spg034055.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding