Spg034010 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034010
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationscaffold13: 33218876 .. 33221431 (+)
RNA-Seq ExpressionSpg034010
SyntenySpg034010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTCCTCTGTTTCTTCTGTCAAATATATGCAATTTGGTGCCACTTCGCTTGGACTCTACAAATTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGCCCACTCCCTTTTCGGTCATATTGACGATTCTCTTCCCAAACCAAGCAAGTTTGTTCGTTCTTCAACCCGGACAGATACTAGCGACATAGACAACACTAATGACACAGACAACACCGACACCACCATCACAGAGATCAGTCCCGATTATCTTCAATGGGTTGCTCGAGATCAAGCCCTTATTACATTAATCAACGCCACTCTGTCACCATCGGCACTTGCTCATGTCGTTGGAACATCCTCGGCCAAAGATCTCTGGAAATCGTTAGAAAAGCGTTATTCTTCTAACACTCGGTCCAATATCCTTGAATTGAGATCTTCTCTTTACACTGTTAAGAAAAATTCCTCTGAATCTATTGACAAATATACCTCTAGTGTAAACCCAAGACTTTTCTTGGGTCAATTCCTCTTGTCATCTATTGTGAAAGTTGGACTTAAGTTGTGTGGTTTCATTGTTGAAGGAAAATGGCAAGCATTTAGTTCAAATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCTTGGAGTTTATTTAGAGAAAAGGAAAATGAAAGGAAAGGAAAAGAAGAAAAGAAAAGAAATGGGAAAGGAAAGAAAGCCAAAAAAAAAAAAAAAAAAGAAAAGAAAGGAAAGTGGGAAAAGACAGCAGGAACCCACCACCGCCTAAGCCAACTCTTGCCCATTTTTAGCCCACTACCAGCCCATTTCTCATCATTTTTCATTCCAAAAGTTACAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCTATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTATAGTAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTTGATGATTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGATTATTCAATTACCTACAACTTTCATGAAGAATTTGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGTAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCATTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAGAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATACTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTACATGCATTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGATTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCATGAGCAAGCTGAGTAAACTTAAGTTTTACGAAAGATGACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGATTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAATGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTATTTCATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAAATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTCTGACTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTCAGAGCTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCC

mRNA sequence

ATGTCTTCTCCTCTGTTTCTTCTGTCAAATATATGCAATTTGGTGCCACTTCGCTTGGACTCTACAAATTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGCCCACTCCCTTTTCGGTCATATTGACGATTCTCTTCCCAAACCAAGCAAGTTTGGAAAAGCTCATGCAAAGCCAGCTATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCC

Coding sequence (CDS)

ATGTCTTCTCCTCTGTTTCTTCTGTCAAATATATGCAATTTGGTGCCACTTCGCTTGGACTCTACAAATTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGCCCACTCCCTTTTCGGTCATATTGACGATTCTCTTCCCAAACCAAGCAAGTTTGGAAAAGCTCATGCAAAGCCAGCTATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCC

Protein sequence

MSSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
Homology
[Close]
BLAST of Spg034010 vs. NCBI nr
Match: KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 2  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKP 61
          +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   
Sbjct: 28 TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK----HLPS 87

Query: 62 AIAG--SEIN 70
          +  G  SEIN
Sbjct: 88 STLGTNSEIN 93

[Close]
BLAST of Spg034010 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 76  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES 135
           LF LSY EG KRPRG+R SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Sbjct: 19  LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

[Close]
BLAST of Spg034010 vs. NCBI nr
Match: KAE8649781.1 (hypothetical protein Csa_012983 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 2  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKP 61
          +S LFLLSNICNLVP+RLDS NYVLWK+Q+SSILKAHSLFGHIDDSLP P K  K  +  
Sbjct: 28 TSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPK--KLSSST 87

Query: 62 AIAGSEIN 70
          A    EIN
Sbjct: 88 AGTNPEIN 93

[Close]
BLAST of Spg034010 vs. NCBI nr
Match: TYK08059.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 2   SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKP 61
           +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   
Sbjct: 28  TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK----HLPS 87

Query: 62  AIAGSEINLSTSGFLFGLSYTEGI 86
           +  G+   ++  G+L  LS  + +
Sbjct: 88  STLGTNSKIN-PGYLQWLSRDQAL 106

[Close]
BLAST of Spg034010 vs. NCBI nr
Match: TYJ97594.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 2  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKP 61
          +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   
Sbjct: 28 TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK----HLPS 87

Query: 62 AIAG--SEIN 70
          +  G  SEIN
Sbjct: 88 STLGTNSEIN 93

[Close]
BLAST of Spg034010 vs. ExPASy TrEMBL
Match: A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 2  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKP 61
          +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   
Sbjct: 28 TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK----HLPS 87

Query: 62 AIAG--SEIN 70
          +  G  SEIN
Sbjct: 88 STLGTNSEIN 93

[Close]
BLAST of Spg034010 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 76  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES 135
           LF LSY EG KRPRG+R SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Sbjct: 19  LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

[Close]
BLAST of Spg034010 vs. ExPASy TrEMBL
Match: A0A5D3BEU0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00250 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 2  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKP 61
          +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   
Sbjct: 28 TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK----HLPS 87

Query: 62 AIAG--SEIN 70
          +  G  SEIN
Sbjct: 88 STLGTNSEIN 93

[Close]
BLAST of Spg034010 vs. ExPASy TrEMBL
Match: A0A5A7UTE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00610 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 2  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKP 61
          +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   
Sbjct: 28 TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK----HLPS 87

Query: 62 AIAG--SEIN 70
          +  G  SEIN
Sbjct: 88 STLGTNSEIN 93

[Close]
BLAST of Spg034010 vs. ExPASy TrEMBL
Match: A0A5D3CCL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002070 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 2   SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKP 61
           +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   
Sbjct: 28  TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK----HLPS 87

Query: 62  AIAGSEINLSTSGFLFGLSYTEGI 86
           +  G+   ++  G+L  LS  + +
Sbjct: 88  STLGTNSKIN-PGYLQWLSRDQAL 106

The following BLAST results are available for this feature:
BLAST of Spg034010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061282.12.8e-1671.43putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m... [more]
KAA0040420.12.8e-1680.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAE8649781.12.8e-1672.06hypothetical protein Csa_012983 [Cucumis sativus][more]
TYK08059.12.8e-1659.52retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ97594.12.8e-1671.43putative mitochondrial protein [Cucumis melo var. makuwa][more]
BLAST of Spg034010 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UZE51.4e-1671.43Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TAS61.4e-1680.00NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BEU01.4e-1671.43Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7UTE51.4e-1671.43Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3CCL21.4e-1659.52Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg034010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 13..51
e-value: 4.9E-8
score: 32.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034010.1Spg034010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding