Spg033972 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg033972
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold13: 37412193 .. 37418387 (-)
RNA-Seq ExpressionSpg033972
SyntenySpg033972
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTTCTCCCACGGCTGACGGCACGACAGCCCCCAAATTTTCCCTTCACCGCTCCGACGCTAGTTCGACTGAAAATTTGTAAACCCTCGATTTAGGGTTTATCTTGTTCATTCTTCAATCTCTTCATCTATCTTTCGCAGGCGAAAATGGCGAACGAGCAACGGTCATCGCCGGGGCCCTGGATCCTCGAAACAATGCCCTTCATTCTTGTTCTTCTCATAGCTGCTCACGTCTTCGCTTTGGTATTAATTCATCAACTCCAATCTTTTCGCTTTTGGAATTGTATTCAATTTCAACCCTCAGTTTTCTCACTTCCGCCCAATTTTTGTAGGTATACTGGATTTATAGGTTAGCGACCCAAAAACAACCCCCCAGGAGGAAGGCACACTGAGTTTACTGTATGATTCGTTCCTGAAACAAACTTTAGTGAAACCCTAATTCGTTAATTGCTTGTCACTGATGTAGAGGAGGTGGTTAAAAAGAGCCATATAACAATGTTTCTCTGTAAGTATCCGTCAGTGTGTACTCTCAGAATCTCAGTTTGGTATTGTAAGAATGTGGAAATGTTTCTTACGAATCAATTTTGATTTGTATGGTTATCCATTCATATATGTGTCATATTGTTTGGTTTTCGTTATCTTGGAAAGCTGGGTTATCTGCTGGTTTATACTAATTTTACGAGCAAACTTGGCTTTTTTTAGGATTTTTCCATACTGATTTGGTAATATAGTCTTAAGTTGTCGTTTGAAATGGTTCCATCATGATGGGTGAAGAATCACCAGGTCAAGAAATGATTGAAGAGTCTGTTTTAGCTATTGAATTTTTTAAAGAAAAAGAAGAAAACAACTAGCAACAAATATCAATGCTCTCGATTTCTCATGAAAGAGTAATCGGTTCTGTTCTTTGTTCTACGAAGAATGGATTGCTGCTGCTTCTTGTGGACTAAGAACTCCAGTAACTTTTCTCCTAGGAGAGTTGGTGAATAGTAACAAACTTTTGTAACTAGTCAAATTTTTCTTGAGGCAGTGAACTACTGTTAATTTCATCGCTGCTTCAGATGATCTTCAGAACTGATTTATTTGTAAATTTTTTCATTTGATAGTCTGCAGACCTATCTGGGTTTTGTACAGTCAAGAGTTCTCAATGTAAATTTCAGATTAAAAGATCGATATGGTGTTGTGCTAGATTTTAGTTGTTCTCGATCAAGATCACCTACGGTGTCAATCAAATGAGTGTCTTGTGAAATCATTGAAATGTTAGTTTAAGTAGTGGTGTCACTAGATGAATGAAATTATATTTTCAGCTGGAAGTCCAGTAATGAGGAAAGTGATTATTTCAAGATACTCTATGAAAATTGAAAGAGGTAGATTTTGAGTTCATTCTTAATACTAAATTTAAATAGAAAGTTTTTATAATATAATCTCATTTGCCTAATCAACACCAATCGAGGCTTGATGGAATCATAATTTGAATTTGATTCAGTATATCTTTGATATTTCCTTAAGATATATGATATGTAATTTCCCAGGTAAAAATGTTAGTGTTATTATCTGTGGTGTATTGTGAATATTAGAGTCGACTTTATACTGACCAGGATACTTGCTATATCTTGCCATCCCTACCTTTCATGAGACATTAAGTCCAAATTATTGTTTGGATGCAATGTTGAATGATGGACAAAGTGGAGCAAGGCATACACCTAACGTCTGCCACGGTATGTTCCTTCATATGGGTGCTCATCTTGGTTGTCATGATCACCATTTTGTGGCCTTCTTTTCGCTTTTGCACCTTAGGAATAAAGACAATCTTCAGGTTTTGGTTTGGCTTTGTTCTTGAACATAGAAGTATCTTTATCCAGCTCATTTTCTCTTGAAAATGAATGTGGCAGCAAATCAACTTATCATATGCTTAAACATGTATTAATTTAGTGATTGGATAGTAAATCCTCTTTGTTGTTATTTAATCCTGACCTCTGGTTAACAAGACTATTTTTCTGTTAGATAGAAAAAGGAAATCATCTCTTTAGCCAGCTGCTGTCTTTTGTTCTCTTATTTTTGTTAAATGACAGACTTGTCACTTTCAAAGCATCATTTACCTTAAAAACACTAGCAAGTAGTGGTGATTCTCTCTTATGGCAGCAAAAAGCATATTGCTTTCTCCATTATGTATAAAGTTCATACGTAACAGCTAGAAGAATTCTATTTACATAGAAACAGGTGTAAAAATTTTCTCACCTTTTCTTTGCATCAGTGGAAGCATTATGTGGTAAGAGATTGGATTTATTGAAGTGTGGGTGAGGTTCTTTCTTGCAAAGGGATTCTAGCTGTCTGTCCAAGCAATCTGAATAGTCACTTGTACTTTTTGCATACACAATCTGTATAACCACTTGCTCGTTTCGCAATTTTATGTCATAATCTTGCTTTTCCAGCTAAGGCAGATCCCAGGACTTTCGACATCAATCGCGAAGAGCATCAACATATTATATATCACCTAAATACTATTTTGGTTCTTGTAGTTTGTGTTTCATTTCGATTTATTTCTTTTCCTTTTAGAGGAGATTTAGTTTCTCCACTTTCAATATATTTTAAACTTAGTCATTATTGTTAGTTTGAAACTAATTTTTTTATCACTTAGTAAAATAATAATAATAATTTTTATTCTAGAAAAATACAATGTAGATATGTTTTCAAAACTTATAGATAGAAAGTTAATAGAGGCACAATCTTTTTTTTTTTTTTTTTAACAAAAGTTAATAATAAACTAAAAATAGTAGCTAGTACTTAAAATTAGTTTTAAGATTTATTTGAAGTGCACAAGTTAAATTTGAACATTCATCAGAAGACATTTGTTCTTGAAGTACGAGGAAGCCTATGCTTATTTTCCTTTTTTGAAAAAGGGAAACTTTCTGGTACTCTTGTGCTTTCTTTACTCGATTTGATTTTACGAATCTAATTCTGAGAAAATGGGGGATTTCATCGGGGTTGGGTGCTTCCTTATAGTAACAATTTTAAAGATGTGTCCATAATAGTTTTATCACATATTCGTATTGATGTGGTAAAAATTAGGGGCGTAATTAGTTCCGCTTGGCTGGGTTTTGAAGTCCAATCCAAAGCAGGACGAATTGATTTCTAAAGGAGTATCAAATGGAACTTTTTCTATTGAAACTACGCTTAATTGAACAGTTTGGTTGGCCAGTTTAAGGTTAGCAGGTTACAAGTTGATTGTGTTCTCTCTTGTTCAACCAAAAGACAAGGAAAAAACACTCCTTTCAAAAAAAAAAAAAAAAAGACACAAAATAATATAGAAAAAGTAAAAAGAAAAATACATACCCACACACTAATTACTAATTAGAAAGATTTCTTATTCATCTGTAGATCTCACTAAAAAAATTAACTAAAAATGACCCAATCAAAAAGTTAATAGAATCTCTCATTGATGGGTGTGTAGACAAATATTTTCATGTAAAATAAACACCTTAAAATACGTTTAATTTACCAATGAAGTTATGAAACCAAATAAAAATAAAATGGGTATAGAATGGGATTCAACAGAAGTTGGATTGATCTCATCATGGGTTGTGTAGAATCGGTGAGCTTTCAAGTTCTCCTCAATGGGACCACGTGAGTTGAGTTCAGTCCAAGAAGAGGTTTCCGCCAAGGAGATTCTCTATCACCGTACTTGTTTCTTATTTGTACTGAAGGACTATTGAGCCTACTAAAGCAAGCAGAGACTAGTAAGGAGTTTTCGGTTTGCGTATTAATAAATATTCTCCTACTATGTCTCACTTGTTTTATGCAGATGACTTGTTTTTCAAGGCATCTACAAGAGATTGCAGGTCCATCAAGAGAACCTTAGACTACGAGAAAACATCGAGACAAACTCTAAACTATGAGAAATCATTGTTTATGACAAGTCCAAATACTAGCTCGGCTTCTAAGGATAATATTAGCAATACCTTGAAAGTTAAGCATATGGAGAGCCTAGGATGATACTTTGGCTTGTCATCTCAGAACACCCGAAACAAGGAGGTCTTCAGCAATATCAAGGAACGTGTATGGAAAGCGCTCCAAGGATGGAAAGAAAACTTTCTTCAGCAGCTGGAAGGGAAGTACTCATTAAATCTGTGACCCAGCCCATCCCAAACTATGTCATGAGTTGTTTTAAATTTCTGAAATCTTTATGTAACAAGATCAACTCTATTTTTGCTAGTTTTTGGTGGGGCTTGATGGAGAATGGAAATAAAATACATTGGCGAAACTGGAAAAGGATGTGCTTCAACAAGGTGGAGGGCGAACTGGGATTTCGAAACCTTTATACTTTTAACCAAGCTATGTTGGCCAAATAGAGTTGGAGGTTGATAAGATATCTTAATAGTCTGTTGGCCAAGGTGCTTAGAGGAAGATACTTCAAGACGGGTCACTTTCTCAAAGCACCCCTAGAAAATAACCCGTCTTATACTTGGAGGAACATCATTTGGGAAGGGATCATTTTGAGAAAGGCTATAGATGGCGTGTAGGCAATGGTATCAATATTGACGCATCAACTGACCCTTGGATCCCTAAAGAAGGCTCTTGTACTCCAATTCTCACCCAAAGAAACATTCACCAATTTACCGTGGCTCAACTCATAGATAACCAAGGAGTGTGGAAAGAAAACTTGATTCGATCGGCCTTTCTGGAGAAGGATGCATATATTATGCTGAATATCCCAATTAACCCAAGCCAAAGGGAGGATGTTGTTATTTAGCACAAAGACACGAAGGGCATATTCTTAGTTAGAAGTGCGTATCGGCTGGGAATTCAATTGAGTCGACAGTCCGAAGCTTCAACATCGAGCTATCAGGAGATGGAAACCAAATGGAAAATCTTCTAGAAAACTAAAATACCTCCTAAAATAAAGATGTGCGGATGAAAAATATACCATGATATCATCTCGACGCGTATGAATCTAATTAATAAAGGATTGGATGTTAACCCAATGTGTCTAATGTGCAGGGAGAAGAAAGAATACACAACTCATATATTTTGGGAGTATAAAGCTACCAAAGGTTTATGGCTTAATTATCTTCCCCCTACTGATTATTTCTCTTTAAATGATAGGAGGAACTGGTCGATGGCGTATTTTTGTGAAAGCTTGTGGAAAAGCAAAGGATAGAGGAGCTGGAATGAAGACAGTTTGAAGACGAGCTTAGTCATATGGTGGCAAATATGGACGCAGAAGAATGAGATTCTTTTTAACCCAAATTTTTTGAAGGAACAGATTGAGAAATATTTAGCAGAGTTCACAGTCAAAGAGGAAGCTAACTTGTTGCCTCAAAGCTTCGATTTGACAACGCCGACAGGTCACCCAACCTGGAATCCACTAAAGGAAGGTCTGTGGAAGCTAAACTGTGATGTCGTTTGGAATGAAGACAAACAATGCAGAGGAATTGAATGGGTTCTTGGCTAGCGGTTTGGAATGATCATTCAGGCGGTCTACCAAAGCATAAACAGGTCGTGGAAGTCAAGCTGGCTGGAGGCATTGGCAATTACTGAGGGAGTTCGTGTGATTCCTTTGGATTCTCCCAAGGTGCAGGTTGAGACTGATGCCCTTCAGATCGTGAGGTTGCTCAACAACCATGACCAGGATGAAACGAAACTCTCTAATTGCATAGTAGAGGCCAAATTCCTAATCCAATTGAGAAACATAGATAACATCTCTCATGTAGCCAGAATTCATAATGGCTTGACCCACAATTTGGCTAAGAAAGCTAGTCAAATTAATGGAGGTGAATCTTGGGCCCATTTTTTTCCCAAATTGGTTGTTGGATTTAAATCAATTAGATATAGGCGTGAACCATCACATGTGTGGGAGATCCCGTCCCACAGTGAATATCTCGGATTTACTATAATTGAATAAAAGGTTTTTGTAACATATTATTCCATTCAATGCATCGGAGCCTTCCAACTTTGACATTAAAAACAAACAACTAGTTAAAGGGAGTGAATGAAAAATTAACAAGTAAACAAATTGGATTTTTTTTTTTTTTCTTATAGCTCTTCGATTTTGTGTGAAGACAAGCCTGGCTTCTCTAGAAGATCAGAAAAAGTAACACGTTTGACTCGAATCTTTCCGGGAGAGGCACAAAAGCTTACGCAACCTAATCTCTTAAAAAAAATTGTGCAGGAGAACGAGGATGGGGCTGACTTGAGGTGA

mRNA sequence

ATGTTGAATGATGGACAAAGTGGAGCAAGGCATACACCTAACGTCTGCCACGGAGGAACTGGTCGATGGCGTATTTTTGTGAAAGCTTGTGGAAAAGCAAAGGATAGAGGAGCTGGAATGAAGACAATTGAGAAATATTTAGCAGAGTTCACAGTCAAAGAGGAAGCTAACTTGTTGCCTCAAAGCTTCGATTTGACAACGCCGACAGGTCACCCAACCTGGAATCCACTAAAGGAAGGTCTGTGGAAGCTAAACTGTGATGCGGTCTACCAAAGCATAAACAGGTCGTGGAAGTCAAGCTGGCTGGAGGCATTGGCAATTACTGAGGGAGTTCGTGTGATTCCTTTGGATTCTCCCAAGGTGCAGGTTGAGACTGATGCCCTTCAGATCGTGAGGTTGCTCAACAACCATGACCAGGATGAAACGAAACTCTCTAATTGCATAGTAGAGGCCAAATTCCTAATCCAATTGAGAAACATAGATAACATCTCTCATGTAGCCAGAATTCATAATGGCTTGACCCACAATTTGGCTAAGAAAGCTAGTCAAATTAATGGAGACAAGCCTGGCTTCTCTAGAAGATCAGAAAAAGTAACACGTTTGACTCGAATCTTTCCGGGAGAGGCACAAAAGCTTACGCAACCTAATCTCTTAAAAAAAATTGTGCAGGAGAACGAGGATGGGGCTGACTTGAGGTGA

Coding sequence (CDS)

ATGTTGAATGATGGACAAAGTGGAGCAAGGCATACACCTAACGTCTGCCACGGAGGAACTGGTCGATGGCGTATTTTTGTGAAAGCTTGTGGAAAAGCAAAGGATAGAGGAGCTGGAATGAAGACAATTGAGAAATATTTAGCAGAGTTCACAGTCAAAGAGGAAGCTAACTTGTTGCCTCAAAGCTTCGATTTGACAACGCCGACAGGTCACCCAACCTGGAATCCACTAAAGGAAGGTCTGTGGAAGCTAAACTGTGATGCGGTCTACCAAAGCATAAACAGGTCGTGGAAGTCAAGCTGGCTGGAGGCATTGGCAATTACTGAGGGAGTTCGTGTGATTCCTTTGGATTCTCCCAAGGTGCAGGTTGAGACTGATGCCCTTCAGATCGTGAGGTTGCTCAACAACCATGACCAGGATGAAACGAAACTCTCTAATTGCATAGTAGAGGCCAAATTCCTAATCCAATTGAGAAACATAGATAACATCTCTCATGTAGCCAGAATTCATAATGGCTTGACCCACAATTTGGCTAAGAAAGCTAGTCAAATTAATGGAGACAAGCCTGGCTTCTCTAGAAGATCAGAAAAAGTAACACGTTTGACTCGAATCTTTCCGGGAGAGGCACAAAAGCTTACGCAACCTAATCTCTTAAAAAAAATTGTGCAGGAGAACGAGGATGGGGCTGACTTGAGGTGA

Protein sequence

MLNDGQSGARHTPNVCHGGTGRWRIFVKACGKAKDRGAGMKTIEKYLAEFTVKEEANLLPQSFDLTTPTGHPTWNPLKEGLWKLNCDAVYQSINRSWKSSWLEALAITEGVRVIPLDSPKVQVETDALQIVRLLNNHDQDETKLSNCIVEAKFLIQLRNIDNISHVARIHNGLTHNLAKKASQINGDKPGFSRRSEKVTRLTRIFPGEAQKLTQPNLLKKIVQENEDGADLR
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 88..181
e-value: 1.2E-7
score: 31.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg033972.1Spg033972.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity