Spg033971 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg033971
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold13: 33872646 .. 33876393 (+)
RNA-Seq ExpressionSpg033971
SyntenySpg033971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTTCACAATGAACCCATTCCTCCATTAATCCAAAGAAGTCAGTGGATAGCAAGATACCTGGAATCTTACCGAAGTGTGAATGAGAAGAACTCGTCGACTTCGATTTCCAATCTTAGATCGAATCCCTCCCTCTTCAATACTGTTGCATGTTGGACTCCCCCTCCGGCGAATTTCTGGAAATTAAATACCGATGCTGCATGTGATCCATCTTCTTCTGCTACTGGCTATGGTTTGATTTGCAGAAATGGAGAAGGAGATATTTTGTTTTCTTCGGCTCTGTTTGAGGATATTCATCTGGAAGCCCATCTTGCCGAGCTTCACGCAATTTTCAAAGGGATGAAGAAAACCCTTAGCCTTGGATGTTCTAATCTGATGGTGGAATCAGACAGCTTAGTGGCAATTATTTTCCTCACAAAGAAATCCCCAATTTGGAAGGACGTGGAGGCCTTGGTGATGTTCATCTGGAATTTAAGCCACTCTTTCGGTAGTATTTCCTTCAGTTTTACTCCTAGAAAAAATAATAAAGTGGCTCATGAGTTAGCTAAGCATGTCAGGTCAACAAGAACTAATAATTCTTGGGTTGATCAGATCTCAAGATGGGTTTGTAATTAGGTCAAATCTGACCATCCAATTTTTTTCCAAGTGGCGTAATAATACCTTGAAAAAAAAAAACTGGTTAATCAATATCTACCCCAGCTAAACGGTTAACAAATATTTTAAAATCTTAAAAATCTCAATAAGACTAAAATTAACGGATCAAAATAAGATGTAAAATTTTTAATATATACATGTGACAACTATATGAAGTGATGTTTATTTAATTTATGTTCATTTCTCTTTCCACCAAGTCTATTTGAAGATTTTTTTTTAAATAGGGGTTTTGTTTTTGTTTTGTTCTTTTTGGAATTTTTTTTAAGCAATGAATCATGATCATTGGCTTTATTCCCAAAGGAAAATGATGAAAACCGACTATTGGAAAATGATGATAAAGTTTTCTTTAAAAGAAAACATCGTTCAAACACGTCTCGAGATATTGACAAATAAAGACATCCATACATCATGAGTTGATTTACCTTTCTTCCAAACAATTTTGATTTCGTTTATTTCTTAACCTTATGTTTGACCTAATCATGGTAGAGGTAAGAGACCATTATCGTAAGGGATGAAGCTAGTTGAGAAACCCCTCCTACTTTTTTTTTTTTTTTGAGTACATCAACATTTGGGGGTGGGGGGATTCGAAACTCTGACCTCATGGTCGAGAGTACATGCCAATTAGCGTTGAGCTAAGTTCGCTTTGGCAAAACCCCTCCTACTTAGTGCTTAGATTCTTCTCATAAAAATTAAATATTGACAATAAGACTACCTTTAATTTATTATTTTTATAAAAAAAATAAAAATAAAATAAGTTGAGATGAACAAAAAAAAACCACTTATTTGAATATAGTTCTTCAAATGACAAGGTATTAAATGCTATAGGACCATTAACATGAACATATATAGTTCAACAAGTTACTAAAATATTTTGTAATCTTTGATCTGGATGGATGTTCGAATTCTCGTGAAAAAATCAAGTAAATTTAATTACGTCCAAAGAAATAGTAAAAGAAATTTGATTTATGAATGAAAAACTATTTTTAGATTATAATATTATAAATGTGGAATGAAGATTTGAATTCTTAACAAGGATGATTACTAATATCTTAACCAATCGTGGCATGAATTGCCAACATGAACGTAATTGAAATTATTCGAATTCTCACCCATGTTACTTGAACTAAAGAAGGAAAAAAAATGAGACGTGACAATTTAAATTCATTTATGGATGAATTTTCCCAATTTTATTGATGTGTTAGATGGAAAGTTGTATGTCATGTAGTTTGTAGTGGGAAAAATCTTCAAGTTTGGGTTGGGTTTGGGCTAGCATATGCATACTAATTTCTTCATTGCCTAAAATTTAGGAAGGAGAGAAAAAGCTTCTTGGAGAAATTTTTAGATGCTCCCGGTGTAATGAGATCCTTAGTTTTGCGTTGTTGGATATAAGAGAGAGAAATTAAATAGCAAAAGTACAACGATTTTGTATCCAACGGTTATTAGAGACCAACAAATTTGAAGATTTAGATCCAACGGTTTTAAAAATGGAGCCCCATTGCACCAGAAACACCTAATAATTTTTCCATGTGTTGAGGATAGTAAAAAATAATAATAATAATAATAATAATAATAAATATCAAACTTTGATTATTATTTATATTTTCAAGGGCAAACATTCTACGAAGACCCTATGAATTATTATGGGGTAAATTGTAAAAACTATGAAATGCCCATATTTCAAATTTCGTTTCTTTACTATTATTATTGTTATTTTTGGACTATGTTACAATTAATCTAAATATTATTATTTTTGTCATACCATTGTGGAGATTTGTGTCGTGTCCTCACCCTTAACAAGTGGTATCAGAGTTAGACCCTGACTGCCATGCCGGTAGAATCTCCAGGTGTTATACAAAAAAGAATTTGTGAGCCTTGTTGATGCCAAAATCCGGACAGAGGACTCACCTGACCTTCACGTGACACCAACAGTGAATTTGTAGAAGCTAAGGAAGACGTGACCTGCAAAACCAGCAAAAACCGCTGCACACCGGTGTGGTGTAGGCCACACCGCCTCCGATGCCTAAGTCAGAAAACAGAGGAGGCGTTGGAAAGTAAAGGGAGAAGTCGAGAGTGAAGTTTTTCGAACCCTTCTTCAGTGATGAAGATAGGTTTTTATACCTGTTTCTCCTCCTAGGGTTTTTAGGAATTCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGGCATCAGGGGCCGAAAGGAGGTGACCGAGCCCGACCCGCGCAAGCGGGCCGAATGGTCGGCCTCGGCCTTTTGTCGAGGCTGACCATATGGGTCGGGCCATGTTGGCCTTACCCTTTGGTCCGGTCTTCCTCTGGGTCGATTCTCTGGTCCTACCTTTGTCCGATTGTCCTCGTCAGCTCCTTGTTCGTCAGTGTGGTCCAAAATTACCTATAACATTAAGCCCCCACTCTTGAATTGAGATTCATCTGCGACTTAATGCTATAGGCTGAGCTCCTTAAGCCCGATTTAAGAGTACGACTCTTGTCTCGTGCTGATTCATGTGTGACTTCCTTGTTATCAAAAGTGGCTGGAGGGCCTCTCTAGTCATTTGGAGTGCTTCATTCGGAGTAGAAGCTGAGCGAGACCCCCGTACTTGGTCATTCGGAGTGCTTCATTCCAGATCGAGGGCTTATGATCCATAATTAAAAATAGGGAAAACAGAAGACTTCACAATCCTGCATTGAAAAAGTTAATTTCTGCAAAAGAAAAATGAGGGAGGAGGCTAGGATTGGCCTTGGCCTCAAGCCCCTGTTAGCTCAACACTTAGCCACCTGCATTCATATGTCAGTCCTTACTGGAAAATAATGGGAGAGTTGCATGATGATTTCATACCTAGCCTTTTGAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCGGCTCCTTGGCTGTTTGCTTGCTCGCTCCACCTTAAGCATCTCCCTGCGGCTTTAGGCGCTTCGGCTGTGCTAAAAAGTGAAGTGACTGAGAACTCGAACCAGTCATGCTGCTCTGAATGCGTGCCTGAGGGTTGGCTTCGGAGCTGGGATGCTCGACCTTGGCCTTGGCATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCTAA

mRNA sequence

ATGTGTGTTCACAATGAACCCATTCCTCCATTAATCCAAAGAAGTCAGTGGATAGCAAGATACCTGGAATCTTACCGAAGTGTGAATGAGAAGAACTCGTCGACTTCGATTTCCAATCTTAGATCGAATCCCTCCCTCTTCAATACTGTTGCATGTTGGACTCCCCCTCCGGCGAATTTCTGGAAATTAAATACCGATGCTGCATGTGATCCATCTTCTTCTGCTACTGGCTATGGTTTGATTTGCAGAAATGGAGAAGGAGATATTTTGTTTTCTTCGGCTCTGTTTGAGGATATTCATCTGGAAGCCCATCTTGCCGAGCTTCACGCAATTTTCAAAGGGATGAAGAAAACCCTTAGCCTTGGATGTTCTAATCTGATGGTGGAATCAGACAGCTTAGTGGCAATTATTTTCCTCACAAAGAAATCCCCAATTTGGAAGGACGTGGAGGCCTTGGTGATGTTCATCTGGAATTTAAGCCACTCTTTCGAAGCTAAGGAAGACGTGACCTGCAAAACCAGCAAAAACCGCTGCACACCGGTGTGGTGTAGGCCACACCGCCTCCGATGCCTAAGTCAGAAAACAGAGGAGGCGTTGGAAAGGTTTTTAGGAATTCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGGCATCAGGGGCCGAAAGGAGGTGACCGAGCCCGACCCGCGCAAGCGGGCCGAATGGTCGGCCTCGGCCTTTTGTCGAGGCTGACCATATGGGTCGGGCCATGTTGGCCTTACCCTTTGGTCCGGTCTTCCTCTGGGTCGATTCTCTGGTCCTACCTTTGTCCGATTGTCCTCGTCAGCTCCTTGTTCGTCAGTGTGGCTGAGCTCCTTAAGCCCGATTTAAGAGTACGACTCTTGTCTCGCGCTTCGGCTGTGCTAAAAAGTGAAGTGACTGAGAACTCGAACCAGTCATGCTGCTCTGAATGCGTGCCTGAGGGTTGGCTTCGGAGCTGGGATGCTCGACCTTGGCCTTGGCATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCTAA

Coding sequence (CDS)

ATGTGTGTTCACAATGAACCCATTCCTCCATTAATCCAAAGAAGTCAGTGGATAGCAAGATACCTGGAATCTTACCGAAGTGTGAATGAGAAGAACTCGTCGACTTCGATTTCCAATCTTAGATCGAATCCCTCCCTCTTCAATACTGTTGCATGTTGGACTCCCCCTCCGGCGAATTTCTGGAAATTAAATACCGATGCTGCATGTGATCCATCTTCTTCTGCTACTGGCTATGGTTTGATTTGCAGAAATGGAGAAGGAGATATTTTGTTTTCTTCGGCTCTGTTTGAGGATATTCATCTGGAAGCCCATCTTGCCGAGCTTCACGCAATTTTCAAAGGGATGAAGAAAACCCTTAGCCTTGGATGTTCTAATCTGATGGTGGAATCAGACAGCTTAGTGGCAATTATTTTCCTCACAAAGAAATCCCCAATTTGGAAGGACGTGGAGGCCTTGGTGATGTTCATCTGGAATTTAAGCCACTCTTTCGAAGCTAAGGAAGACGTGACCTGCAAAACCAGCAAAAACCGCTGCACACCGGTGTGGTGTAGGCCACACCGCCTCCGATGCCTAAGTCAGAAAACAGAGGAGGCGTTGGAAAGGTTTTTAGGAATTCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGGCATCAGGGGCCGAAAGGAGGTGACCGAGCCCGACCCGCGCAAGCGGGCCGAATGGTCGGCCTCGGCCTTTTGTCGAGGCTGACCATATGGGTCGGGCCATGTTGGCCTTACCCTTTGGTCCGGTCTTCCTCTGGGTCGATTCTCTGGTCCTACCTTTGTCCGATTGTCCTCGTCAGCTCCTTGTTCGTCAGTGTGGCTGAGCTCCTTAAGCCCGATTTAAGAGTACGACTCTTGTCTCGCGCTTCGGCTGTGCTAAAAAGTGAAGTGACTGAGAACTCGAACCAGTCATGCTGCTCTGAATGCGTGCCTGAGGGTTGGCTTCGGAGCTGGGATGCTCGACCTTGGCCTTGGCATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCTAA

Protein sequence

MCVHNEPIPPLIQRSQWIARYLESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNRCTPVWCRPHRLRCLSQKTEEALERFLGIRRCFGTNQAEPGHQGPKGGDRARPAQAGRMVGLGLLSRLTIWVGPCWPYPLVRSSSGSILWSYLCPIVLVSSLFVSVAELLKPDLRVRLLSRASAVLKSEVTENSNQSCCSECVPEGWLRSWDARPWPWHEAEHFFCFAC
Homology
[Close]
BLAST of Spg033971 vs. NCBI nr
Match: XP_021748567.1 (uncharacterized protein LOC110714367 [Chenopodium quinoa])

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-08
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 0 

Query: 53  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIF 112
           WTPPP N  KLN DA+ D  +   G+G I R+  G +LFS+        +  +AE  A  
Sbjct: 142 WTPPPPNAIKLNVDASID-EAGWVGFGAIARDHSGQVLFSAVRRVKARWDVLIAECKAAL 201

Query: 113 KGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSF 164
            G+KK    G  N+++ESDSL  +  L K + ++ DV+ ++  I +LS  F
Sbjct: 202 FGLKKAKERGFDNIILESDSLQLVSKLKKSAFLFSDVDCILEDIISLSSCF 251

[Close]
BLAST of Spg033971 vs. NCBI nr
Match: OMO81404.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-07
Identity = 40/138 (28.99%), Postives = 67/138 (48.55%), Query Frame = 0 

Query: 22   LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLI 81
            LE Y S+  +    S+++ R           W PPP    K+NTDAA    S   G G++
Sbjct: 1023 LEQYTSIQRRTDQFSLTHPRQ--------LTWVPPPMGMVKINTDAAFCSGSGEVGLGVV 1082

Query: 82   CRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTK 141
             R+  G+I+  ++   +   ++  AE+HA+  G K     G  + + ESDSL+AI  + K
Sbjct: 1083 IRDSAGEIIVCASRCLNFIADSLYAEVHALLFGFKLAFEYGIESCIFESDSLLAITQINK 1142

Query: 142  KSPIWKDVEALVMFIWNL 160
              P++ +   +   + NL
Sbjct: 1143 TDPVFWEANTVAHNLANL 1152

[Close]
BLAST of Spg033971 vs. NCBI nr
Match: XP_018857521.1 (uncharacterized protein LOC109019635 [Juglans regia] >KAF5477566.1 hypothetical protein F2P56_004192 [Juglans regia])

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-07
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 0 

Query: 53  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIF 112
           W PPP    KLN D A     S +G G+I R+  G ++FS++  E   ++    EL A+ 
Sbjct: 287 WFPPPVGHLKLNVDGALFHEQSRSGVGMILRDETGKVIFSASKLEHESIDPMEVELVALL 346

Query: 113 KGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSF 164
           +G++  L LG  +L VESD+L+ +  LTK+       E LV  I NL   F
Sbjct: 347 RGLQLCLLLGIHDLEVESDALLVVQELTKEEESMSIWENLVFEIRNLLERF 397

[Close]
BLAST of Spg033971 vs. NCBI nr
Match: KAF7801271.1 (reverse transcriptase [Senna tora])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-07
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0 

Query: 53   WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDIL--FSSALFEDIHLEAHLAELHA 112
            W PPP  +WKLNTD +C  + +  G G + R+  G+ +  FS  + E  +L   +AEL A
Sbjct: 1722 WDPPPLGWWKLNTDGSCQGNQNMIGGGSLIRDSNGNWVNGFSKFMGEGNNL---IAELWA 1781

Query: 113  IFKGMKKTLSLGCSNLMVESDSLVAI 137
            IF+G+K    L CS+L+VESDSL  +
Sbjct: 1782 IFEGLKLANHLHCSHLIVESDSLAVV 1804

[Close]
BLAST of Spg033971 vs. NCBI nr
Match: XP_018819751.1 (uncharacterized protein LOC108990286 [Juglans regia] >KAF5465294.1 hypothetical protein F2P56_015314 [Juglans regia])

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-07
Identity = 41/158 (25.95%), Postives = 73/158 (46.20%), Query Frame = 0 

Query: 22  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLI 81
           L   R++  KNS+        +  L N    W+PPP + WK+N DAA D +    G G+I
Sbjct: 120 LRDMRNMQMKNST-------RDQRLHNQNVNWSPPPIHVWKINWDAAIDKAKCKVGIGII 179

Query: 82  CRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTK 141
            RN  G ++ +S L   ++ +  L E     +  +    LG +N+++E D+L  I  +  
Sbjct: 180 VRNHTGSVVATSRLNRPLYPDLALTEAIGALEAARLCHHLGLTNIILEGDALQVIQVINS 239

Query: 142 KSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNRCT 180
           +S  W     ++  +     +FE+   +  +   N+ T
Sbjct: 240 RSENWSSTGMIMEDVKGQLSTFESWSAIHIRREGNKAT 270

[Close]
BLAST of Spg033971 vs. ExPASy TrEMBL
Match: A0A1R3IFQ3 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_12422 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-08
Identity = 40/138 (28.99%), Postives = 67/138 (48.55%), Query Frame = 0 

Query: 22   LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLI 81
            LE Y S+  +    S+++ R           W PPP    K+NTDAA    S   G G++
Sbjct: 1023 LEQYTSIQRRTDQFSLTHPRQ--------LTWVPPPMGMVKINTDAAFCSGSGEVGLGVV 1082

Query: 82   CRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTK 141
             R+  G+I+  ++   +   ++  AE+HA+  G K     G  + + ESDSL+AI  + K
Sbjct: 1083 IRDSAGEIIVCASRCLNFIADSLYAEVHALLFGFKLAFEYGIESCIFESDSLLAITQINK 1142

Query: 142  KSPIWKDVEALVMFIWNL 160
              P++ +   +   + NL
Sbjct: 1143 TDPVFWEANTVAHNLANL 1152

[Close]
BLAST of Spg033971 vs. ExPASy TrEMBL
Match: A0A2I4HMY3 (uncharacterized protein LOC109019635 OS=Juglans regia OX=51240 GN=LOC109019635 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-08
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 0 

Query: 53  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIF 112
           W PPP    KLN D A     S +G G+I R+  G ++FS++  E   ++    EL A+ 
Sbjct: 287 WFPPPVGHLKLNVDGALFHEQSRSGVGMILRDETGKVIFSASKLEHESIDPMEVELVALL 346

Query: 113 KGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSF 164
           +G++  L LG  +L VESD+L+ +  LTK+       E LV  I NL   F
Sbjct: 347 RGLQLCLLLGIHDLEVESDALLVVQELTKEEESMSIWENLVFEIRNLLERF 397

[Close]
BLAST of Spg033971 vs. ExPASy TrEMBL
Match: A0A2I4EK26 (uncharacterized protein LOC108990286 OS=Juglans regia OX=51240 GN=LOC108990286 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-07
Identity = 41/158 (25.95%), Postives = 73/158 (46.20%), Query Frame = 0 

Query: 22  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLI 81
           L   R++  KNS+        +  L N    W+PPP + WK+N DAA D +    G G+I
Sbjct: 120 LRDMRNMQMKNST-------RDQRLHNQNVNWSPPPIHVWKINWDAAIDKAKCKVGIGII 179

Query: 82  CRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTK 141
            RN  G ++ +S L   ++ +  L E     +  +    LG +N+++E D+L  I  +  
Sbjct: 180 VRNHTGSVVATSRLNRPLYPDLALTEAIGALEAARLCHHLGLTNIILEGDALQVIQVINS 239

Query: 142 KSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNRCT 180
           +S  W     ++  +     +FE+   +  +   N+ T
Sbjct: 240 RSENWSSTGMIMEDVKGQLSTFESWSAIHIRREGNKAT 270

[Close]
BLAST of Spg033971 vs. ExPASy TrEMBL
Match: A0A2P6PKD3 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0249781 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 49/159 (30.82%), Postives = 74/159 (46.54%), Query Frame = 0 

Query: 39   NLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFED 98
            ++RS+ S  +  A W PPP   +K+NTDAA +  S + G G + R+ +G +L    L + 
Sbjct: 1206 DVRSSSSESSVSAIWKPPPVGMFKINTDAAWNADSLSCGLGTLIRDSKGAVL--GGLAKS 1265

Query: 99   IHLEAHL-AELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTK--KSPIWKDVEAL--- 158
             H  + L AE  AI  G+    SL  S+  +ESDSLV I  L     S  W   + +   
Sbjct: 1266 SHAMSSLAAEAMAIVLGLSLASSLSLSSFQLESDSLVLISHLLNPLSSIDWSATQIVSRI 1325

Query: 159  ---------VMFIWNLSHSFEAKEDVTCKTSKNRCTPVW 183
                     V ++W   H+  A + +    S+  CT  W
Sbjct: 1326 RAMAGHFDRVNWLWTSRHANCAADSIAALASRRVCTDDW 1362

[Close]
BLAST of Spg033971 vs. ExPASy TrEMBL
Match: A0A6P9EAW2 (uncharacterized protein LOC118344571 OS=Juglans regia OX=51240 GN=LOC118344571 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 41/156 (26.28%), Postives = 73/156 (46.79%), Query Frame = 0 

Query: 22  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLI 81
           L   R++  KNS+        +  L N    W+PPP + WK+N DAA D +    G G+I
Sbjct: 33  LRDMRNMQMKNST-------RDQRLHNQNVNWSPPPLHVWKINWDAAVDKAKCKVGIGII 92

Query: 82  CRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTK 141
            RN  G ++ +S L   ++ +  LAE     +  +    LG +N+++E D+L  I  +  
Sbjct: 93  VRNHTGSVVATSRLNRPLYPDPALAEAIGALEAARLCHHLGLTNIILEGDALQVIQAINS 152

Query: 142 KSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNR 178
           +S  W     ++  +     +FE+   +  +   N+
Sbjct: 153 RSENWSSTGMIMEDVKGQLSTFESWSAIHIRREGNK 181

The following BLAST results are available for this feature:
BLAST of Spg033971 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_021748567.12.5e-0836.94uncharacterized protein LOC110714367 [Chenopodium quinoa][more]
OMO81404.11.2e-0728.99reverse transcriptase [Corchorus capsularis][more]
XP_018857521.11.2e-0736.94uncharacterized protein LOC109019635 [Juglans regia] >KAF5477566.1 hypothetical ... [more]
KAF7801271.11.6e-0743.02reverse transcriptase [Senna tora][more]
XP_018819751.12.1e-0725.95uncharacterized protein LOC108990286 [Juglans regia] >KAF5465294.1 hypothetical ... [more]
BLAST of Spg033971 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg033971 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3IFQ36.0e-0828.99Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_12422 PE=4 SV... [more]
A0A2I4HMY36.0e-0836.94uncharacterized protein LOC109019635 OS=Juglans regia OX=51240 GN=LOC109019635 P... [more]
A0A2I4EK261.0e-0725.95uncharacterized protein LOC108990286 OS=Juglans regia OX=51240 GN=LOC108990286 P... [more]
A0A2P6PKD31.3e-0730.82Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6... [more]
A0A6P9EAW21.3e-0726.28uncharacterized protein LOC118344571 OS=Juglans regia OX=51240 GN=LOC118344571 P... [more]
BLAST of Spg033971 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 60..227
e-value: 2.7E-10
score: 42.4
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 64..165
e-value: 2.6E-14
score: 53.1
NoneNo IPR availablePANTHERPTHR47074:SF37PROTEIN, PUTATIVE-RELATEDcoord: 49..164
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 49..164
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 63..163
e-value: 1.28518E-13
score: 64.6428
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 59..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg033971.1Spg033971.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity