Spg033939 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg033939
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Serine/arginine-rich splicing factor SC35-like
Location	scaffold13: 34513188 .. 34517084 (+)
RNA-Seq Expression	Spg033939
Synteny	Spg033939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAATCTCTTCCCGTCTTCCATCAGAGACCTAGTTGAGCTTGAGCCCTGCATCCGCCGCTGGTGCTGGTCACCACTCTCTCCATAGCTGAAATCGATCAGTTGCAGAGAAAAATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGTATCTCCGACCCCTAATCTTCTCTTATCCTCTTTCTTCATCTTCAACCTCATCTCTTCCTTTCTTGTTTTTCTCTAATTTCTTCCCCTTTCTTTGTTTTTCAGGAACCACCGCCGACGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTCGACGTCTTCATCCCCAGAGACCGCAGGTTTCTTTCTTTCTCTCTTGCGCGTTTAATCTTCTTCTTCTGATGAATTACAGTGCGTAATTGGTTGGTCTGATTGCTGTTAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGACGAAGCACAGAAGGCAATTGATAAGCTTGACGGTTAGCTTCACTTCGACCAAAAACTCGCATTAATCTTGAGCCTTTTTCAATTTGACTATGTTGCTGTTTTTATGCGAAATTTCAATTTGGGTTTCTACTTTGCTATCTAGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTTGCTAAGTACGGTCCCAATGCTGAGAAAATGTGAGTTTGGGAGAATTTTCTTTTAATTCTTTTGTATGTAATTTGTCTTGCTGTAGGGCTGCAAATGGAAGTATGTTTTGATTCTTGAATTTTGGTTTTTGTCAGTCGCAAGGGGAGAGTGATGGAGTCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGTGAGAGTCCTTGTCTAAATGCATCTGAACTTGGAGTTCGAATCAGAGCTCTGGTGAAGAATTTTATATTTTCTCGAGGTAATTACCCTCATTTACTTGTGAAACAAAACAAAAATTCAATGTACTCTTCAGCATAGTCATATAGAGTGAAAGAGGTAATGCTTTCTTCTCTGGTTATGGATGAAATTTCCTTGGTAGTTTTACACTTCTTTTAGGACGGACTTGCATCCTTCCTCTGTTTTGGTAGAATTGGCATATATGGTTTGGTACACATAGAATTAGCTATGTGTAAGTGTATTACTTTAGTTTAAGCTAAGGGTAATGTTTAACACAAGGACATGATTTCTAGATTTTTCAAACTATATGGATGTTTGAAATAGAGGTATTTTCGAAAATTGACAAACTATAGGTATATGATTTGTAATTATTCCTTCATTTAACGCGTGTTGCATGAAGGAGTGCTGAAATACCAGTGTCATGTAGTCTTTACCGCACCATGCAATTAGGAATTTCTAGGAAGTCCTTTTTTATGAGTTGGTTCACGAATGCAATCACTTTTGGCCTCGCCGTGTTGTTTTGGCTACCTAAATTTAGCAGTTATTAATCTGTCTGGTCATCAGTCTCTTGAATCCAAGTCATAGATTTCGTGGAGTGCAGAGAAGATATAAACAAAAAAAGCGATGAAAGTACGTTGCTTTGACATTCTAGATTGTTAATCACTGTGGATTGGCCTAGTGTGGTCAATAAGGGTCATGAGAATAGTAAAGAGTTTAGAGGGAATGAGTTCAATCCATGGTGGTCACCTACCAAGGATTTAATATCTTGCAAGTTTCCTTGGTTACCAAATGTAGTAGAGTCATGCAGTTATCTCATGAGTTTAGTCGAAGTGTGTGCAAGTTGGCTTGAACACTCATGGATATTAAAAAAAGATATTCTAGATTGGTGGGTTACAGACTTACTGTTTTTTCCTGAACTATTTTGATATGTGACCGTGCATGAGGTGATGGATATCAAATGAGCATAGTATGATTGAATTTTTATATTCAGTACAGTTTTGTGCTCCATGAAAAATATTTAAAATCATGAAGTCATGTTGCTTTCTGAAAGCTACTTTAAAATCTTTACAAACTGTATTTGGTTAAAAACTGGTAATGACAATTTTTTATGGGACAAGGAAAGAATGGCTAATAAGGCTTGTCTTAAATTGAATATCTTATCATGACAGGCAGTTGATTGATATCTCAGTATTGTGGGCTTAGGTATTCACCCTTCTATTATGTATTGCAAAAACATTTCAGGCATCGTGATGACTACAGAGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGGGATAGACTCCACAAAAGTGAAAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGACCGTAATAAGGATCGTAGGAGGGGAAGAGATGATGATGAACAGCGTAGTGCTAGTCGCTCTGATAGAAGGTACACAAATACATTCTTAATTTTATTACTTCAAGGGATGTTGTATTAAGGCGTTAGAAGGTTGGCCTAGGAACTAGTTACCATCCTTTTATCAGGTTTGCAACACTTTGGTAGTTGCATTGCACAATAGGAGTACTTTTACCTGGCAAATTAGCCATTTCCTTGCATTTAAATAGGCAAAGGGATGGGTGGAGCCATAGAGGTGATCTTTTGCTGTTTTGTTCACATTTTATCTACCATGTTCTCATGGTAAAGAGGGCATGTTTACCAAAACGTTAAATATTTTTCAAAACATGCTGGGGCGAGTTGTTGGGCGGCTTGGCTTGTGAAAGTAGCTGTGCATTTGAAATATTATTCACAAGTCCATAGTTTTCCTAAGAATAACAACTTGAGTTCTTAAAAATAGGCCTCTTGTGAGAACATATTAAAGAAAAACAAATAAAAGAACAGGTTATTCAACCATCTTACGCCTGAACTTTTGTTTGGAAGATTAAAAAAACTGTTTCTTTGTTTCTTTCTTTTTTAACCACCTCCAGCATTAAAAAAAAAAAACTGTTTCTGAAAAATAGCTTTTGAACAACTCCTCTGCTCATGTTTTTACCAATTCCTTGTTAACAACATTAATATTTTAATAGTATCATTATTTTTTAGATGAACTTTTCCGTTGCAACATCTCACACTCCAAAACCAATGATCTAACATCTATTAGGAATTTAGGAGTACTATTTTAAGTTTCTTGAGCATATCCATACACACTTTTCATTAAATTTCATAGACATCTTACACTGCCATAACCATGCAAGGTCCTCATCCTTCAGTCACTGTAATTCTTTTCATTCTTTTTGGTCTGCACTCTAACTGGAAATGAATTCTATACTGAAGCATGTCGCCTGCCCGGCATTCCCCCGATACTCGGAGAAGCATATCTCCACGTAGGACTCCATCGAGGGGTAGAAGCGATGATGAGCATTCACCAAAGCGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGGAGCCCTTCTCCTGCTAAATCTGATGCTGATGTGAGCTAATCTGCCATGCTTATTGCCAATGATTTTTAAATTTCTGGTGTCTGTCTAGTGATATCTAAAATATGCCTGCAGGAATGATCTATTCATGCTGTAGGGGTAATTTATGAAAACAAGGCATTGGATTTTAGAAATTCTCTATGCATTTTATGATGGAACAAGCATGGCATCCCAGGGGGATATTTTGCACAATTGTAACTGCCTTTATACTCCAAGGACTGGTTGGATGTCTAGATAGACATGTAGGATTCTGTTCCTAATTAGTTTATGAGTTCTTTTTCCTTTTCTTTTTTTTTTTCCTTTAGATTTCATTGTAGTATCTGTACTATTTACATGGAAAATATGAGTCTTCCTAGCGTTTGGTTTTTACCTCCTTAGATGTATAATGAATTGATTCTTCTGCACTGTATCTTGTCTTTTTGGATCCCTATTCATCTCACAGTTTGTGG

mRNA sequence

ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGACGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTCGACGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGACGAAGCACAGAAGGCAATTGATAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTTGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAGAGTGATGGAGTCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGACGGACTTGCATCCTTCCTCTGTTTTGGTAGAATTGGCATATATGGTTTGGCATCGTGATGACTACAGAGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGGGATAGACTCCACAAAAGTGAAAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGACCGTAATAAGGATCGTAGGAGGGGAAGAGATGATGATGAACAGCGTAGTGCTAGTCGCTCTGATAGAAGCATGTCGCCTGCCCGGCATTCCCCCGATACTCGGAGAAGCATATCTCCACGTAGGACTCCATCGAGGGGTAGAAGCGATGATGAGCATTCACCAAAGCGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGGAGCCCTTCTCCTGCTAAATCTGATGCTGATGTGAGCTAA

Coding sequence (CDS)

ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGACGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTCGACGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGACGAAGCACAGAAGGCAATTGATAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTTGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAGAGTGATGGAGTCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGACGGACTTGCATCCTTCCTCTGTTTTGGTAGAATTGGCATATATGGTTTGGCATCGTGATGACTACAGAGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGGGATAGACTCCACAAAAGTGAAAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGACCGTAATAAGGATCGTAGGAGGGGAAGAGATGATGATGAACAGCGTAGTGCTAGTCGCTCTGATAGAAGCATGTCGCCTGCCCGGCATTCCCCCGATACTCGGAGAAGCATATCTCCACGTAGGACTCCATCGAGGGGTAGAAGCGATGATGAGCATTCACCAAAGCGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGGAGCCCTTCTCCTGCTAAATCTGATGCTGATGTGAGCTAA

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADVS

Homology

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BLAST of Spg033939 vs. NCBI nr
Match: KAA0064834.1 (serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa])

HSP 1 Score: 429.5 bits (1103), Expect = 2.1e-116
Identity = 240/269 (89.22%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPRSR                 HRDDYRDRDYRRRSRSRSRERYDRDR H+SERER+RSR
Sbjct: 121 SPRSR-----------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR+KDRRRGRDDDE+RSAS SDRSMSP RHSPDTRRSISPRRT PSRGRSD+E 
Sbjct: 181 SRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNER 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDADVS 269
           SPK DNGSPDDKPVDSRSPSPA+SDADVS
Sbjct: 241 SPKGDNGSPDDKPVDSRSPSPARSDADVS 252

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BLAST of Spg033939 vs. NCBI nr
Match: XP_008445340.1 (PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo])

HSP 1 Score: 426.4 bits (1095), Expect = 1.8e-115
Identity = 238/267 (89.14%), Postives = 244/267 (91.39%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPRSR                 HRDDYRDRDYRRRSRSRSRERYDRDR H+SERER+RSR
Sbjct: 121 SPRSR-----------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR+KDRRRGRDDDE+RSAS SDRSMSP RHSPDTRRSISPRRT PSRGRSD+E 
Sbjct: 181 SRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNER 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDAD 267
           SPK DNGSPDDKPVDSRSPSPA+SDAD
Sbjct: 241 SPKGDNGSPDDKPVDSRSPSPARSDAD 250

[Close]

BLAST of Spg033939 vs. NCBI nr
Match: XP_011649457.1 (serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 2.4e-115
Identity = 237/267 (88.76%), Postives = 244/267 (91.39%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPRSR                 HRDD+RDRDYRRRSRSRSRERYDRDR H+SERER+RSR
Sbjct: 121 SPRSR-----------------HRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR+KDRRRGRDDDE+RSAS SDRSMSP RHSPDTRRSISPR+T PSR RSDDEH
Sbjct: 181 SRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEH 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDAD 267
           SPK DNGSPDDKPVDSRSPSPA+SDAD
Sbjct: 241 SPKGDNGSPDDKPVDSRSPSPARSDAD 250

[Close]

BLAST of Spg033939 vs. NCBI nr
Match: KAG6598682.1 (Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 425.6 bits (1093), Expect = 3.1e-115
Identity = 238/268 (88.81%), Postives = 244/268 (91.04%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPR R                 HRDDYRDRDYRRRSRSRSRER+DRDR H+SERER+RSR
Sbjct: 121 SPRPR-----------------HRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR KDRRRGRDD E+RSAS SDRSMSPARHSPDTRRSISPRRT PSRGRSDDEH
Sbjct: 181 SRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDEH 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDADV 268
           SP+RDNGSPDDKPVDSRSPSPAKSDADV
Sbjct: 241 SPRRDNGSPDDKPVDSRSPSPAKSDADV 251

[Close]

BLAST of Spg033939 vs. NCBI nr
Match: XP_022997247.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima] >XP_023547110.1 serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 424.1 bits (1089), Expect = 9.0e-115
Identity = 237/268 (88.43%), Postives = 244/268 (91.04%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPR R                 HRDDYRDRDYRRRSRSRSRER+DRDR H+SERER+RSR
Sbjct: 121 SPRPR-----------------HRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR KDRRRGRDD E+RSAS SDRSMSPARHSPDTRRSISPRRT PSRGRSD+EH
Sbjct: 181 SRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDEEH 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDADV 268
           SP+RDNGSPDDKPVDSRSPSPAKSDADV
Sbjct: 241 SPRRDNGSPDDKPVDSRSPSPAKSDADV 251

[Close]

BLAST of Spg033939 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.1e-66
Identity = 173/270 (64.07%), Postives = 194/270 (71.85%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E   K+R RSRSR
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSR-RSRSR 120

Query: 121 SP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSE 180
           SP       RSR+     S     +     RDDYR++DYR+RSRSRS +R +R    K  
Sbjct: 121 SPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHE-EKDR 180

Query: 181 RERHRSRSRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRG 240
             R R+RSRSASPD  K R RGR D+E RS SRS  S SPAR SP   RS SP++T    
Sbjct: 181 DHRRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKT---- 240

Query: 241 RSDDEHSPKRDNGSPDDKPVDSRSPSPAKS 264
                 SP R+  SP DK  + RSPSP +S
Sbjct: 241 ------SPARE-VSP-DKRSNERSPSPRRS 251

[Close]

BLAST of Spg033939 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-25
Identity = 101/246 (41.06%), Postives = 131/246 (53.25%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G        +    RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRS 183
           PR R      S                    R RSRSRSR RY R +     R R RSRS
Sbjct: 123 PRRRRRSRSRS--------------------RSRSRSRSRSRYSRSK----SRSRTRSRS 182

Query: 184 RSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSP 243
           RS S  R+  R + +     RS SRS RS S +R  P T    S R + SR RS      
Sbjct: 183 RSTSKSRSARRSKSKSSSVSRSRSRS-RSRSRSRSPPPT----SKRESNSRSRSKSPPKS 218

Query: 244 KRDNGS 248
             + G+
Sbjct: 243 PEEEGA 218

[Close]

BLAST of Spg033939 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 9.0e-25
Identity = 100/246 (40.65%), Postives = 130/246 (52.85%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRS 183
           PR R      S                    R RSRSRSR RY R +     R R RSRS
Sbjct: 123 PRRRRRSRSRS--------------------RSRSRSRSRSRYSRSK----SRSRTRSRS 182

Query: 184 RSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSP 243
           RS S  R+  R + +     RS SRS RS S +R  P     +S R + SR RS      
Sbjct: 183 RSTSKSRSARRSKSKSSSVSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKS 218

Query: 244 KRDNGS 248
             + G+
Sbjct: 243 PEEEGA 218

[Close]

BLAST of Spg033939 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 115.5 bits (288), Expect = 9.0e-25
Identity = 100/246 (40.65%), Postives = 130/246 (52.85%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRS 183
           PR R      S                    R RSRSRSR RY R +     R R RSRS
Sbjct: 123 PRRRRRSRSRS--------------------RSRSRSRSRSRYSRSK----SRSRTRSRS 182

Query: 184 RSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSP 243
           RS S  R+  R + +     RS SRS RS S +R  P     +S R + SR RS      
Sbjct: 183 RSTSKSRSARRSKSKSSSVSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKS 218

Query: 244 KRDNGS 248
             + G+
Sbjct: 243 PEEEGA 218

[Close]

BLAST of Spg033939 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 115.5 bits (288), Expect = 9.0e-25
Identity = 100/246 (40.65%), Postives = 130/246 (52.85%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRS 183
           PR R      S                    R RSRSRSR RY R +     R R RSRS
Sbjct: 123 PRRRRRSRSRS--------------------RSRSRSRSRSRYSRSK----SRSRTRSRS 182

Query: 184 RSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSP 243
           RS S  R+  R + +     RS SRS RS S +R  P     +S R + SR RS      
Sbjct: 183 RSTSKSRSARRSKSKSSSVSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKS 218

Query: 244 KRDNGS 248
             + G+
Sbjct: 243 PEEEGA 218

[Close]

BLAST of Spg033939 vs. ExPASy TrEMBL
Match: A0A5A7VC44 (Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001460 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.0e-116
Identity = 240/269 (89.22%), Postives = 246/269 (91.45%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPRSR                 HRDDYRDRDYRRRSRSRSRERYDRDR H+SERER+RSR
Sbjct: 121 SPRSR-----------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR+KDRRRGRDDDE+RSAS SDRSMSP RHSPDTRRSISPRRT PSRGRSD+E 
Sbjct: 181 SRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNER 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDADVS 269
           SPK DNGSPDDKPVDSRSPSPA+SDADVS
Sbjct: 241 SPKGDNGSPDDKPVDSRSPSPARSDADVS 252

[Close]

BLAST of Spg033939 vs. ExPASy TrEMBL
Match: A0A1S3BCG4 (serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103488401 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 8.8e-116
Identity = 238/267 (89.14%), Postives = 244/267 (91.39%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPRSR                 HRDDYRDRDYRRRSRSRSRERYDRDR H+SERER+RSR
Sbjct: 121 SPRSR-----------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR+KDRRRGRDDDE+RSAS SDRSMSP RHSPDTRRSISPRRT PSRGRSD+E 
Sbjct: 181 SRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNER 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDAD 267
           SPK DNGSPDDKPVDSRSPSPA+SDAD
Sbjct: 241 SPKGDNGSPDDKPVDSRSPSPARSDAD 250

[Close]

BLAST of Spg033939 vs. ExPASy TrEMBL
Match: A0A0A0LQG4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.2e-115
Identity = 237/267 (88.76%), Postives = 244/267 (91.39%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPRSR                 HRDD+RDRDYRRRSRSRSRERYDRDR H+SERER+RSR
Sbjct: 121 SPRSR-----------------HRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR+KDRRRGRDDDE+RSAS SDRSMSP RHSPDTRRSISPR+T PSR RSDDEH
Sbjct: 181 SRSASPDRSKDRRRGRDDDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEH 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDAD 267
           SPK DNGSPDDKPVDSRSPSPA+SDAD
Sbjct: 241 SPKGDNGSPDDKPVDSRSPSPARSDAD 250

[Close]

BLAST of Spg033939 vs. ExPASy TrEMBL
Match: A0A6J1K4H2 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492207 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 4.4e-115
Identity = 237/268 (88.43%), Postives = 244/268 (91.04%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPR R                 HRDDYRDRDYRRRSRSRSRER+DRDR H+SERER+RSR
Sbjct: 121 SPRPR-----------------HRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR KDRRRGRDD E+RSAS SDRSMSPARHSPDTRRSISPRRT PSRGRSD+EH
Sbjct: 181 SRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDEEH 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDADV 268
           SP+RDNGSPDDKPVDSRSPSPAKSDADV
Sbjct: 241 SPRRDNGSPDDKPVDSRSPSPAKSDADV 251

[Close]

BLAST of Spg033939 vs. ExPASy TrEMBL
Match: A0A6J1HFJ8 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462587 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 9.7e-115
Identity = 237/268 (88.43%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSR 120

Query: 121 SPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSR 180
           SPR R                 HRDDYRDRDYRRRSRSRSRER+DRDR H+SERER+RSR
Sbjct: 121 SPRPR-----------------HRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSR 180

Query: 181 SRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEH 240
           SRSASPDR KDR RGRDD E+RSAS SDRSMSPARHSPDTRRSISPRRT PSRGRSDDEH
Sbjct: 181 SRSASPDRIKDRLRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDEH 240

Query: 241 SPKRDNGSPDDKPVDSRSPSPAKSDADV 268
           SP+RDNGSPDDKPVDSRSPSPAKSDADV
Sbjct: 241 SPRRDNGSPDDKPVDSRSPSPAKSDADV 251

[Close]

BLAST of Spg033939 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-67
Identity = 173/270 (64.07%), Postives = 194/270 (71.85%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E   K+R RSRSR
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSR-RSRSR 120

Query: 121 SP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSE 180
           SP       RSR+     S     +     RDDYR++DYR+RSRSRS +R +R    K  
Sbjct: 121 SPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHE-EKDR 180

Query: 181 RERHRSRSRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRG 240
             R R+RSRSASPD  K R RGR D+E RS SRS  S SPAR SP   RS SP++T    
Sbjct: 181 DHRRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKT---- 240

Query: 241 RSDDEHSPKRDNGSPDDKPVDSRSPSPAKS 264
                 SP R+  SP DK  + RSPSP +S
Sbjct: 241 ------SPARE-VSP-DKRSNERSPSPRRS 251

[Close]

BLAST of Spg033939 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-67
Identity = 173/270 (64.07%), Postives = 194/270 (71.85%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E   K+R RSRSR
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSR-RSRSR 120

Query: 121 SP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSE 180
           SP       RSR+     S     +     RDDYR++DYR+RSRSRS +R +R    K  
Sbjct: 121 SPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHE-EKDR 180

Query: 181 RERHRSRSRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRG 240
             R R+RSRSASPD  K R RGR D+E RS SRS  S SPAR SP   RS SP++T    
Sbjct: 181 DHRRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKT---- 240

Query: 241 RSDDEHSPKRDNGSPDDKPVDSRSPSPAKS 264
                 SP R+  SP DK  + RSPSP +S
Sbjct: 241 ------SPARE-VSP-DKRSNERSPSPRRS 251

[Close]

BLAST of Spg033939 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-12
Identity = 95/260 (36.54%), Postives = 120/260 (46.15%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGR------------SRSRSPRS 136
           +DG +L GRE+ V FA+     E  +K   M +  +  GR            SRSRSP  
Sbjct: 97  MDGYLLLGRELTVVFAE-----ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPP 156

Query: 137 RTDLHPSSVLVELAYMVWHRDDYRDRDYRR---RSRSRSRERYDRDRLHKSERERHRSRS 196
           R     S              DY     RR   RS S   ERYD  R +        SR 
Sbjct: 157 RRGRSRS-----------RSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRG 216

Query: 197 RSASPDRNKDRRRGRDDDEQRSASRSD-RSMSPARHSPDTRRSISPRRTPSRGRSDDEHS 256
           RS +P R K   R      +RS SRS  RS SP   SP   RS+SPRR+ SR       S
Sbjct: 217 RSLTPVRGKS--RSLSPSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRS-PRRSRS 274

Query: 257 PKRDNGSPDDKPVDSRSPSP 261
           P+R   S   +P  SRS SP
Sbjct: 277 PRRSRRSYTPEPARSRSQSP 274

[Close]

BLAST of Spg033939 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-10
Identity = 65/196 (33.16%), Postives = 102/196 (52.04%), Query Frame = 0


Query: 18  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 77
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  DGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRG---RSRSRSPRSRTDLHP---S 137
           + +++ GREI + FA+   N +  ++ R    +S   G   R+  RSPR R   H    S
Sbjct: 109 NHKVIGGREIAIVFAE--ENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRS 168

Query: 138 SVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDR-DRLHKSERERHRSRSRSASPDRNK 197
               E  +     DD      RRRSRS SR    R +R +KS   R     R  +P R++
Sbjct: 169 PPRRESRHSKVREDDLYSP--RRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSR 228

Query: 198 DRRRGRDDDEQRSASR 207
              R R     RS SR
Sbjct: 229 CLSRSR----SRSLSR 236

[Close]

BLAST of Spg033939 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-10
Identity = 84/253 (33.20%), Postives = 125/253 (49.41%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKT-RGRSRSRSP 123
           +    +A +A  ++DG +L GRE+ V FA+   N +K  + R  +   ++ R + R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RSRTDLHPSSVLVELAYMVWHRDDYRDRDY------RRRSRSRSRE--RYDRDRLHKSER 183
              +   P             R   R R Y      R +SRS S +  RY+++R +    
Sbjct: 147 PRYSRSPPP--------RRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSP 206

Query: 184 ERHRSRSRSASPDRNKDRRRGRDDDEQRSAS-RSDRSMSPAR---HSPDTRRSISPRRTP 243
             + SR RS SP R K   R      +RS S R +RS +P +    SP  R+S SP   P
Sbjct: 207 PHNGSRVRSGSPGRVKSHSR----SPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVP 262

The following BLAST results are available for this feature:

BLAST of Spg033939 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064834.1	2.1e-116	89.22	serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa]	[more]
XP_008445340.1	1.8e-115	89.14	PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo]	[more]
XP_011649457.1	2.4e-115	88.76	serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus]	[more]
KAG6598682.1	3.1e-115	88.81	Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp...	[more]
XP_022997247.1	9.0e-115	88.43	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima] >XP...	[more]

BLAST of Spg033939 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	2.1e-66	64.07	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	3.1e-25	41.06	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	9.0e-25	40.65	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	9.0e-25	40.65	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	9.0e-25	40.65	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of Spg033939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VC44	1.0e-116	89.22	Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BCG4	8.8e-116	89.14	serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LQG4	1.2e-115	88.76	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV...	[more]
A0A6J1K4H2	4.4e-115	88.43	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1HFJ8	9.7e-115	88.43	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata ...	[more]

BLAST of Spg033939 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	1.5e-67	64.07	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.5e-67	64.07	ortholog of human splicing factor SC35	[more]
AT1G55310.1	1.8e-12	36.54	SC35-like splicing factor 33	[more]
AT5G18810.1	2.2e-10	33.16	SC35-like splicing factor 28	[more]
AT3G13570.1	3.8e-10	33.20	SC35-like splicing factor 30A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 5.3E-25 score: 99.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..87 e-value: 7.2E-21 score: 73.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.570105
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..103 e-value: 1.1E-27 score: 98.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..125
None	No IPR available	PANTHER	PTHR23147:SF156	SERINE/ARGININE-RICH SPLICING FACTOR SC35	coord: 1..266
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..266
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg033939.1	Spg033939.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding