Spg033927 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg033927
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold13: 32780226 .. 32782037 (+)
RNA-Seq ExpressionSpg033927
SyntenySpg033927
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTTGGAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGAAGGATCTTTGGTTTTCTCTGGTTTTTCGAACATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTCGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTTGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCATTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCAAAAATGAAGAGTTTGATGTATAGTACATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGGTGTGGTATTGAATTTGGAAAATCTGGAAAGTAGAATGTGAAGTGTGATTTTTTATTCAAGTATTTAGAATTCATGAGCATGGAAAGTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCAGGTCTACAAACTAGGGAACTAGCTAAGACTGTGAGTGACAAAACGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGTGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCCAAGCATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTCTTCCACGAGCAAGCTGAGTAAACTTGGGTTTTACGAAAGATAACGATAAGCAGACATGTTCTAATGTTTTCATGTGATTTTCTGAGATTTCTATTAACTACATGACTCAGATATTAAGCCCGAGGCTATATGGTACCGTGTGCACATAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGAGAGTGCTGTGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGATCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGATGAACCTGCGATGTTTTTTAGAAAGCTTTTATCATTGCACGTTTATGTTTAACGCCTTGGTTGAGCAACTTTATACGTTAAAAGTTTTATCACGTATTCTGATTTCCGAATGTACAGTTTTAAATTTAGTCACTCAGTACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCCGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATGTTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCAATTTTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCGGCACCTTGTGTATGTTGAAAGGTTTCCAGGGATTCCGCTGTGTTGTGTTTCACATAGAATATCTTATATCTAAGATTAGTATGTTTATCAGGATCAACGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGTAGGTGGTTCGGGAGGGGGTGTGACAATAGTGGTTCCACCCAATTAG

mRNA sequence

ATGGTTTTTGGAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGAAGGATCTTTGGTTTTCTCTGGTTTTTCGAACATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGATATTAAGCCCGAGGCTATATGGTACCGTGTGCACATAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCCGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATGTTGTAAATGTTTTGATCAACGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGTAGGTGGTTCGGGAGGGGGTGTGACAATAGTGGTTCCACCCAATTAG

Coding sequence (CDS)

ATGGTTTTTGGAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGAAGGATCTTTGGTTTTCTCTGGTTTTTCGAACATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGATATTAAGCCCGAGGCTATATGGTACCGTGTGCACATAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCCGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATGTTGTAAATGTTTTGATCAACGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGTAGGTGGTTCGGGAGGGGGTGTGACAATAGTGGTTCCACCCAATTAG

Protein sequence

MVFGMENRAQDFRAKQKDLWFSLVFRTFWGVQVESEALFGQEEIDIKPEAIWYRVHIGYISLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYVVNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVTIVVPPN
Homology
[Close]
BLAST of Spg033927 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-24
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 62  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV------------ 121
           L TLSVLRDNDAVVEIEL VPDTLPTSAESS S+S TW+ELY ESV+V            
Sbjct: 81  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMS 140

Query: 122 -VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVT 150
            ++++ +V  GSTGIVRGDDV WLHA+FR + VGG GGGVT
Sbjct: 141 RLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg033927 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-24
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 62  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV------------ 121
           L TLSVLRDNDAVVEIEL VPDTLPTSAESS S+S TW+ELY ESV+V            
Sbjct: 81  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMS 140

Query: 122 -VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVT 150
            ++++ +V  GSTGIVRGDDV WLHA+FR + VGG GGGVT
Sbjct: 141 RLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg033927 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 7.2e-24
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 0 

Query: 54   RVHIGYISLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV---- 113
            ++++   SL TLSVLRDNDAVVEIEL VPDTLPTSAES  S+S TW+ELY ESV+V    
Sbjct: 1409 KLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHVEMFC 1468

Query: 114  ---------VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVTIVV 153
                     +++++NV  GS GIVRGDDV WLHA+FR +  GG GGGVT  V
Sbjct: 1469 YFTNQGMSGLHLMLNV--GSVGIVRGDDVCWLHAVFRAKTAGGPGGGVTFYV 1518

[Close]
BLAST of Spg033927 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 7.2e-24
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 0 

Query: 54   RVHIGYISLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV---- 113
            ++++   SL TLSVLRDNDAVVEIEL VPDTLPTSAES  S+S TW+ELY ESV+V    
Sbjct: 1409 KLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHVEMFC 1468

Query: 114  ---------VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVTIVV 153
                     +++++NV  GS GIVRGDDV WLHA+FR +  GG GGGVT  V
Sbjct: 1469 YFTNQGMSGLHLMLNV--GSVGIVRGDDVCWLHAVFRAKTAGGPGGGVTFYV 1518

[Close]
BLAST of Spg033927 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0 

Query: 61  SLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV----------- 120
           SL TLSVLRDN+AV  IEL VPDTLPTSAESS S+S TW+ELY ESV+V           
Sbjct: 82  SLSTLSVLRDNNAV--IELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVM 141

Query: 121 --VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVT 150
             ++++ NV+ GSTGIVRGDDV WLHA+FR + VGG GGGVT
Sbjct: 142 SELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg033927 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.4e-25
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 62  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV------------ 121
           L TLSVLRDNDAVVEIEL VPDTLPTSAESS S+S TW+ELY ESV+V            
Sbjct: 81  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMS 140

Query: 122 -VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVT 150
            ++++ +V  GSTGIVRGDDV WLHA+FR + VGG GGGVT
Sbjct: 141 RLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg033927 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.4e-25
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 62  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV------------ 121
           L TLSVLRDNDAVVEIEL VPDTLPTSAESS S+S TW+ELY ESV+V            
Sbjct: 81  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMS 140

Query: 122 -VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVT 150
            ++++ +V  GSTGIVRGDDV WLHA+FR + VGG GGGVT
Sbjct: 141 RLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg033927 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.5e-24
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 0 

Query: 54   RVHIGYISLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV---- 113
            ++++   SL TLSVLRDNDAVVEIEL VPDTLPTSAES  S+S TW+ELY ESV+V    
Sbjct: 1409 KLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHVEMFC 1468

Query: 114  ---------VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVTIVV 153
                     +++++NV  GS GIVRGDDV WLHA+FR +  GG GGGVT  V
Sbjct: 1469 YFTNQGMSGLHLMLNV--GSVGIVRGDDVCWLHAVFRAKTAGGPGGGVTFYV 1518

[Close]
BLAST of Spg033927 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.5e-24
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 0 

Query: 54   RVHIGYISLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV---- 113
            ++++   SL TLSVLRDNDAVVEIEL VPDTLPTSAES  S+S TW+ELY ESV+V    
Sbjct: 1409 KLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHVEMFC 1468

Query: 114  ---------VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVTIVV 153
                     +++++NV  GS GIVRGDDV WLHA+FR +  GG GGGVT  V
Sbjct: 1469 YFTNQGMSGLHLMLNV--GSVGIVRGDDVCWLHAVFRAKTAGGPGGGVTFYV 1518

[Close]
BLAST of Spg033927 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-23
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0 

Query: 61  SLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSRTWVELYIESVYV----------- 120
           SL TLSVLRDN+AV  IEL VPDTLPTSAESS S+S TW+ELY ESV+V           
Sbjct: 82  SLSTLSVLRDNNAV--IELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVM 141

Query: 121 --VNVLINVTGGSTGIVRGDDVRWLHAIFRTELVGGSGGGVT 150
             ++++ NV+ GSTGIVRGDDV WLHA+FR + VGG GGGVT
Sbjct: 142 SELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

The following BLAST results are available for this feature:
BLAST of Spg033927 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062409.11.1e-2465.35reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.11.1e-2465.35putative Retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0042035.17.2e-2458.93DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK17971.17.2e-2458.93DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK11835.11.4e-2263.73uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
BLAST of Spg033927 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg033927 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9N35.4e-2565.35Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY75.4e-2565.35Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7TKT03.5e-2458.93Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5D3D1503.5e-2458.93Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5D3CJX36.6e-2363.73CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Spg033927 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg033927.1Spg033927.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016779 nucleotidyltransferase activity