Spg033915 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg033915
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CHCH domain-containing protein
Location	scaffold13: 33581462 .. 33583466 (-)
RNA-Seq Expression	Spg033915
Synteny	Spg033915

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTCGGAGCTCCGGAGGTCAGTATTCCGTCGATTTCTCCTTTATTTCTTCTTATGTCAATCGTCATATCTGCGTTCAGATGATTTTATCTCGCCAGATTTTGTTTCCGGTTATTTTTTCCTGTCTGGTGGTGGCTCATGTATGAACAGTGGGATTCGATTTATGGCTGAGAGAAATTTTCGTTTTTATGAATCTGATTTGACGAGAAGGCTGTTAACATTTTTTTTTTTTTTTTTTTTTGTAAAACTAGGGTTTCAAGCTTTTGCATGCTTTGAGATTTGAAATTTCATATGATAGCGAGGAATATTTGAGCTGTGTTATTTGCTAGATTTCTCTTATGTGTGTGGTAAGTGCTTAACCTTTAATTATTGTTGCAGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACTACGCAACCCTCCGGCGCCAGGTAAAATACCATGAGGTTATATGATTTAATTTAATTATCTGTTTTTATGATTTCTTTTAGGGGAAAGTTTGTCGGGTAGCCGTTGTTAGGGCCTGCGTTTTAGGTGATATCTACCCTGTATGTCCGTGGTGGGTTGGGTTCTTGCCCGGGCTCCTTGGAGATGCGGCTTTACCCAAGGCATGTTTTGGTTGTTAACAATGTTTAGGTCTACCTTCCAATGTTTTAGGTTAAGACCTTTGAGTTTGAGAAGTTAATAAATAATAACTTTAAACCACAAGAGTCAAACTTCATAGCATGAAAACTCTGGAGTGGTGGGGTGCGGTAATTCAAGGAGAGGGACCCTCTACACTTGAGCTATATAAAAAACAATAGCTGCAGTTGTGTCCACCTTTTTGGGAAGTTTTAACCTTTAAGTATATGAACTATGTTACCACCGTTATTCATCAGTATGTTGCTAATAATTAACGATATGGATTCATGGTTATTGACTGCTGTATAGCTGGAATCCTTGGAACGTATTACTCTCAATATCAGTGCGAATGAATATGCTGTTCTTTTTCATATTAAGCCGAAAGTAACCTTATGCTTTTGACAATTTATTCTTAACAATATAGTTTTTGTCCCTAAAATTGACTTGACTTCTGCAGTTAGTTCTGCTCCTCCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGAATTGGTGCCACTATTGCTCAAGGTGAGTAAGAGGCACTTGCACTCGCACTTTCATTTCCTACAATAAATTATTTTATTGCTATCGTAACCATTCCTCTTATTTTTTTTCTTTGTGCTAATGTGCAGGTATGGCCTTTGGTACCGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGAGTCATCCAGCACGAGACTGTTGATTCATCTTCTTCTTCAGCACCTGCTGTAGCGAGTAATCCTGGAGGATCTGAGGCTTGTAATGTTCAATCAAAGGCCTTTCAGGATGTAGGTTCCTTGTTCTCTATTGTTATTTATGATGAGTTTCTTCTTTTCGATGCTTGGATTCTAAAGTCATTAACATTATTGTCTTATTTTCATACTCAAGCAACTTGCATATTCTTTTATTTGTTCTTCTTTTGCAGTGCCTGAACCATTATGGAAGTGACATTGGAAAGTGCCAGTTCTACTTGGATATGTTGCAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAAAAGGATTGATTTTTAGAACAATCATTTTATTCTCTGTGCTCCATTCGGATGACCGCAGTGAGCGGTGTCAAGATTACGGTGTGTTTTGACAGTGTTTTCATTTTACGAGTACTTTCTATAACTTTAATAAAAGGTGTTTAATGATGAAACACACCACCGTTTGGACTCCTATTGTTTGGTTTTATGTTTTGAGTGTCCTCTTATGAAATTGCTGTCTGGATTATTAATATTAAGATGTACTTGAAATATTCTGAGAATTAGCAAATTACTCGATGGAAACAATCATAATTGAAATTGTTACAGTTTTAAAAAGTAAAATGAT

mRNA sequence

ATGCCTCGTCGGAGCTCCGGAGGTCAGTATTCCGTCGATTTCTCCTTTATTTCTTCTTATGTCAATCGTCATATCTGCGTTCAGATGATTTTATCTCGCCAGATTTTGTTTCCGGTTATTTTTTCCTGTCTGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACTACGCAACCCTCCGGCGCCAGGGGAAAGTTTGTCGGGTAGCCGTTGTTAGGGCCTGCGTTTTAGGTGATATCTACCCTGTATGTCCGTGGTGGGTTGGGTTCTTGCCCGGGCTCCTTGGAGATGCGGCTTTACCCAAGGCATTTTTTGTCCCTAAAATTGACTTGACTTCTGCAGTTAGTTCTGCTCCTCCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGAATTGGTGCCACTATTGCTCAAGGTATGGCCTTTGGTACCGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGAGTCATCCAGCACGAGACTGTTGATTCATCTTCTTCTTCAGCACCTGCTGTAGCGAGTAATCCTGGAGGATCTGAGGCTTGTAATGTTCAATCAAAGGCCTTTCAGGATTGCCTGAACCATTATGGAAGTGACATTGGAAAGTGCCAGTTCTACTTGGATATGTTGCAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA

Coding sequence (CDS)

ATGCCTCGTCGGAGCTCCGGAGGTCAGTATTCCGTCGATTTCTCCTTTATTTCTTCTTATGTCAATCGTCATATCTGCGTTCAGATGATTTTATCTCGCCAGATTTTGTTTCCGGTTATTTTTTCCTGTCTGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACTACGCAACCCTCCGGCGCCAGGGGAAAGTTTGTCGGGTAGCCGTTGTTAGGGCCTGCGTTTTAGGTGATATCTACCCTGTATGTCCGTGGTGGGTTGGGTTCTTGCCCGGGCTCCTTGGAGATGCGGCTTTACCCAAGGCATTTTTTGTCCCTAAAATTGACTTGACTTCTGCAGTTAGTTCTGCTCCTCCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGAATTGGTGCCACTATTGCTCAAGGTATGGCCTTTGGTACCGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGAGTCATCCAGCACGAGACTGTTGATTCATCTTCTTCTTCAGCACCTGCTGTAGCGAGTAATCCTGGAGGATCTGAGGCTTGTAATGTTCAATCAAAGGCCTTTCAGGATTGCCTGAACCATTATGGAAGTGACATTGGAAAGTGCCAGTTCTACTTGGATATGTTGCAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA

Protein sequence

MPRRSSGGQYSVDFSFISSYVNRHICVQMILSRQILFPVIFSCLDDLLPVPPLALHYATLRRQGKVCRVAVVRACVLGDIYPVCPWWVGFLPGLLGDAALPKAFFVPKIDLTSAVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSSSSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFYLDMLQECRRGSGSVLGA

Homology

[Close]

BLAST of Spg033915 vs. NCBI nr
Match: KAA0065106.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-52
Identity = 111/137 (81.02%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 96  GDAALPKAFFVPKIDLTSAVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHR 155
           G +A   A   P  +  + V+SAPPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHR
Sbjct: 8   GRSAPRPAARAPARNPPAPVNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHR 67

Query: 156 AVDAVMGPRVIQHETVDSSSSSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFY 215
           AVDAVMGPR IQHET+DSS+SSAP+VASN GGS+ACNVQSK+FQDCLNHYGSDI KCQFY
Sbjct: 68  AVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACNVQSKSFQDCLNHYGSDISKCQFY 127

Query: 216 LDMLQECRRGSGSVLGA 233
           LDMLQECRR SGSVLGA
Sbjct: 128 LDMLQECRRSSGSVLGA 144

[Close]

BLAST of Spg033915 vs. NCBI nr
Match: XP_008444901.1 (PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 5.5e-52
Identity = 110/137 (80.29%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 96  GDAALPKAFFVPKIDLTSAVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHR 155
           G +A   A   P  +  + V+SAPPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHR
Sbjct: 8   GRSAPRPAARAPARNPPAPVNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHR 67

Query: 156 AVDAVMGPRVIQHETVDSSSSSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFY 215
           AVDAVMGPR IQHET+DSS+SSAP+VA+N GGS+ACNVQSK+FQDCLNHYGSDI KCQFY
Sbjct: 68  AVDAVMGPRTIQHETIDSSASSAPSVANNSGGSDACNVQSKSFQDCLNHYGSDISKCQFY 127

Query: 216 LDMLQECRRGSGSVLGA 233
           LDMLQECRR SGSVLGA
Sbjct: 128 LDMLQECRRSSGSVLGA 144

[Close]

BLAST of Spg033915 vs. NCBI nr
Match: XP_038886373.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 9.4e-52
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 116 SSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSS 175
           SSAPPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHRAVDAVMGPR IQHET+DSS+
Sbjct: 28  SSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETIDSST 87

Query: 176 SSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFYLDMLQECRRGSGSVLGA 233
           SSAP+VA+NPGGS+AC VQSK+FQDCLNHYGSDI KCQFYLDMLQECRR SGSVLGA
Sbjct: 88  SSAPSVANNPGGSDACTVQSKSFQDCLNHYGSDISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Spg033915 vs. NCBI nr
Match: XP_022962551.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita moschata] >XP_023545354.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita pepo subsp. pepo] >KAG7029663.1 SPAC6C3.02c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-51
Identity = 112/138 (81.16%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 96  GDAALPKAFFVPKIDLTSAVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHR 155
           G +A   A   P  +  +   SAPPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHR
Sbjct: 8   GRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHR 67

Query: 156 AVDAVMGPRVIQHETVDSSS-SSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQF 215
           AVDAVMGPRVIQHETVDSS+ SSAP+VASNPGGS+ACNVQSK+FQDCLNHYGSDI KCQF
Sbjct: 68  AVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGSDISKCQF 127

Query: 216 YLDMLQECRRGSGSVLGA 233
           YLDMLQECR+ SGSVLGA
Sbjct: 128 YLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Spg033915 vs. NCBI nr
Match: XP_011649682.1 (hemiasterlin resistant protein 1 [Cucumis sativus] >KGN62739.1 hypothetical protein Csa_022490 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-51
Identity = 107/117 (91.45%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 116 SSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSS 175
           S APPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHRAVDAVMGPR IQHETVDSS+
Sbjct: 28  SPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVDSSA 87

Query: 176 SSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFYLDMLQECRRGSGSVLGA 233
           SSAP+VASN GGS+ACNVQSK+FQDCLNHYGSDI KCQFYLDMLQECRR SGSVLGA
Sbjct: 88  SSAPSVASNSGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Spg033915 vs. ExPASy TrEMBL
Match: A0A5A7VFK2 (Coiled-coil-helix-coiled-coil-helix domain-containing protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004400 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 111/137 (81.02%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 96  GDAALPKAFFVPKIDLTSAVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHR 155
           G +A   A   P  +  + V+SAPPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHR
Sbjct: 8   GRSAPRPAARAPARNPPAPVNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHR 67

Query: 156 AVDAVMGPRVIQHETVDSSSSSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFY 215
           AVDAVMGPR IQHET+DSS+SSAP+VASN GGS+ACNVQSK+FQDCLNHYGSDI KCQFY
Sbjct: 68  AVDAVMGPRTIQHETIDSSASSAPSVASNSGGSDACNVQSKSFQDCLNHYGSDISKCQFY 127

Query: 216 LDMLQECRRGSGSVLGA 233
           LDMLQECRR SGSVLGA
Sbjct: 128 LDMLQECRRSSGSVLGA 144

[Close]

BLAST of Spg033915 vs. ExPASy TrEMBL
Match: A0A1S3BAZ1 (uncharacterized protein C6C3.02c-like OS=Cucumis melo OX=3656 GN=LOC103488112 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 110/137 (80.29%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 96  GDAALPKAFFVPKIDLTSAVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHR 155
           G +A   A   P  +  + V+SAPPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHR
Sbjct: 8   GRSAPRPAARAPARNPPAPVNSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHR 67

Query: 156 AVDAVMGPRVIQHETVDSSSSSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFY 215
           AVDAVMGPR IQHET+DSS+SSAP+VA+N GGS+ACNVQSK+FQDCLNHYGSDI KCQFY
Sbjct: 68  AVDAVMGPRTIQHETIDSSASSAPSVANNSGGSDACNVQSKSFQDCLNHYGSDISKCQFY 127

Query: 216 LDMLQECRRGSGSVLGA 233
           LDMLQECRR SGSVLGA
Sbjct: 128 LDMLQECRRSSGSVLGA 144

[Close]

BLAST of Spg033915 vs. ExPASy TrEMBL
Match: A0A6J1HDK4 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462950 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 7.8e-52
Identity = 112/138 (81.16%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 96  GDAALPKAFFVPKIDLTSAVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHR 155
           G +A   A   P  +  +   SAPPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHR
Sbjct: 8   GRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHR 67

Query: 156 AVDAVMGPRVIQHETVDSSS-SSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQF 215
           AVDAVMGPRVIQHETVDSS+ SSAP+VASNPGGS+ACNVQSK+FQDCLNHYGSDI KCQF
Sbjct: 68  AVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGSDISKCQF 127

Query: 216 YLDMLQECRRGSGSVLGA 233
           YLDMLQECR+ SGSVLGA
Sbjct: 128 YLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Spg033915 vs. ExPASy TrEMBL
Match: A0A0A0LNY2 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370390 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 107/117 (91.45%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 116 SSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSS 175
           S APPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHRAVDAVMGPR IQHETVDSS+
Sbjct: 28  SPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVDSSA 87

Query: 176 SSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFYLDMLQECRRGSGSVLGA 233
           SSAP+VASN GGS+ACNVQSK+FQDCLNHYGSDI KCQFYLDMLQECRR SGSVLGA
Sbjct: 88  SSAPSVASNSGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Spg033915 vs. ExPASy TrEMBL
Match: A0A6J1K966 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492237 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.3e-51
Identity = 111/138 (80.43%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 96  GDAALPKAFFVPKIDLTSAVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHR 155
           G +A   A   P  +  +  +SAPPPAPVQGGGGGSMLGG+GATIAQGMAFGTGSAVAHR
Sbjct: 8   GRSASRPAPRAPPRNTPAPANSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHR 67

Query: 156 AVDAVMGPRVIQHETVDSSS-SSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQF 215
           AVDAVMGPRVIQHETVDSS+ SSAP+VA NPGGS+ACNVQSK+FQDCLNHYGSDI KCQF
Sbjct: 68  AVDAVMGPRVIQHETVDSSTPSSAPSVAINPGGSDACNVQSKSFQDCLNHYGSDISKCQF 127

Query: 216 YLDMLQECRRGSGSVLGA 233
           YLDMLQECR+ SGSVLGA
Sbjct: 128 YLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Spg033915 vs. TAIR 10
Match: AT5G64400.1 (CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-37
Identity = 80/119 (67.23%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 115 VSSAPPPAPVQ-GGGGGSMLGGIGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDS 174
           V  APPPAP Q  GGGG M  GIG+TIAQGMAFGTGSAVAHRAVD+VMGPR IQHE V++
Sbjct: 27  VHRAPPPAPAQASGGGGGMFSGIGSTIAQGMAFGTGSAVAHRAVDSVMGPRTIQHEAVEA 86

Query: 175 SSSSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFYLDMLQECRRGSGSVLGA 233
           +S+SA A A +   S  C++ +KAFQDC+  YGS+I KCQFY+DML ECR+ SGSV+GA
Sbjct: 87  ASASA-APAGSAMLSSTCDIHAKAFQDCIGSYGSEISKCQFYMDMLSECRKNSGSVIGA 144

[Close]

BLAST of Spg033915 vs. TAIR 10
Match: AT5G09570.1 (Cox19-like CHCH family protein )

HSP 1 Score: 134.8 bits (338), Expect = 8.8e-32
Identity = 68/119 (57.14%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 114 AVSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDS 173
           +V+ APPPA  Q   GGS LG IGA+I +G+A+GTG+A  HR VD+VMGPR  +HETV S
Sbjct: 27  SVNRAPPPATAQPSSGGSFLGNIGASITEGLAWGTGTAFGHRVVDSVMGPRTFKHETVVS 86

Query: 174 SSSSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFYLDMLQECRRGSGSVLGA 233
              SA    +      AC++ SKAFQDC+NH+GSDI KCQFY+DML EC++ SGSV+ A
Sbjct: 87  QVPSAANTMT------ACDIHSKAFQDCVNHFGSDISKCQFYMDMLSECKKNSGSVVAA 139

[Close]

BLAST of Spg033915 vs. TAIR 10
Match: AT5G64400.2 (BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-21
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 115 VSSAPPPAPVQ-GGGGGSMLGGIGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDS 174
           V  APPPAP Q  GGGG M  GIG+TIAQGMAFGTGSAVAHRAVD+VMGPR IQHE V++
Sbjct: 27  VHRAPPPAPAQASGGGGGMFSGIGSTIAQGMAFGTGSAVAHRAVDSVMGPRTIQHEAVEA 86

Query: 175 SSSSAPAVASNPGGSEACNVQSKAFQD 201
           +S+SA A A +   S  C++ +KAFQD
Sbjct: 87  ASASA-APAGSAMLSSTCDIHAKAFQD 112

The following BLAST results are available for this feature:

BLAST of Spg033915 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065106.1	2.5e-52	81.02	coiled-coil-helix-coiled-coil-helix domain-containing protein 10 [Cucumis melo v...	[more]
XP_008444901.1	5.5e-52	80.29	PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo]	[more]
XP_038886373.1	9.4e-52	90.60	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-...	[more]
XP_022962551.1	1.6e-51	81.16	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial ...	[more]
XP_011649682.1	2.1e-51	91.45	hemiasterlin resistant protein 1 [Cucumis sativus] >KGN62739.1 hypothetical prot...	[more]

BLAST of Spg033915 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg033915 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFK2	1.2e-52	81.02	Coiled-coil-helix-coiled-coil-helix domain-containing protein 10 OS=Cucumis melo...	[more]
A0A1S3BAZ1	2.7e-52	80.29	uncharacterized protein C6C3.02c-like OS=Cucumis melo OX=3656 GN=LOC103488112 PE...	[more]
A0A6J1HDK4	7.8e-52	81.16	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial ...	[more]
A0A0A0LNY2	1.0e-51	91.45	CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370390 PE=4 S...	[more]
A0A6J1K966	2.3e-51	80.43	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-...	[more]

BLAST of Spg033915 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64400.1	2.4e-37	67.23	CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana...	[more]
AT5G09570.1	8.8e-32	57.14	Cox19-like CHCH family protein	[more]
AT5G64400.2	1.4e-21	66.67	BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 191..224 e-value: 1.2E-7 score: 31.6
None	No IPR available	PANTHER	PTHR13523	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77	coord: 112..226
None	No IPR available	PANTHER	PTHR13523:SF16	SUBFAMILY NOT NAMED	coord: 112..226
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 189..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg033915.1	Spg033915.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007005	mitochondrion organization
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005634	nucleus