Spg033796 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg033796
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold13: 34218169 .. 34224552 (-)
RNA-Seq Expression	Spg033796
Synteny	Spg033796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCGACAGGCGAAGCGTGGAACTCCGACAGCGACTCGTATCGGTTTTGCAGGCAAGACCCACGTGTTCTGGCGTCGAGAAACGGGGAGGGAGCTCCTCCTCCCTCCTCTTTTCTGTTAAAAAGAAAAAGAAAGTGAGGATAGTGGGGAAGAAAAGAAGAAAGAAAGGATAAAAAAAAAGAGAAAAAAAATGTCGCCGGCAGCAGATGTGCTGGCGTTGGTGGGTTGAAGAAGAAGAAGTGGTAGGTTGAAGAAGAAGAAAGAAGAGGAGGAGGAGAGAGAAAGAAATAAAAATGGAAAATAATAATATTTTATTATTTTAATATTTTTATTTTAAAAAATTAAAAAATATATATTTTTTAATAAAAAAATAGCGCTACGTCAGTAAGCCGTTAGTTTTTAACGGAAAAATAAATGGAGGGACCACAATGAAATTAAAACCAAACCTCAAGGTCTAGATTGTTGTGTTTGAAAACTGCGGGATCAAAATGAAACCTAATCCAAACTTTAGCGACTAAAAGTGTATTTTTCCCTTATTTATATTATATTTACCTTAGTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTTCATCAAATTTTTTCCAATATAATGAAAATGACGTTTCACTTCCTATGTTAAAATGTCGAACTTATTGACATGTAAAAATATCGATATGTCGATGTGAATTTAATACCAGGGTTAAAACTAAAAAAAAGTTGTATAGAACTATAAAAGATATGCATATAAAATTGCAAAATCCCTAACTATATATAACAAAAACATTTTAAAGTATGTATATAACTGTTACAATATATAAAATATAAGATTTGCATAATCTCCAAAAACAATTAAATAATCAACCTCACTCAATTATATAAAATGTCGTAAGTGGTGGTGCTCAAGTTTGGTTCTAATACAAACAACGTATAGACGAAATGTTAATGCTATTAACATATTTTATAAATTGAATTAGAGCATAAAGAAAGAAGCTTGAAATTAACGAATTATAAACACACAATTCTTCTTTGGTTGATGACTCAATTAGCTACCTTTAAACTTGATTAAAGTTACCATTTCTATCCACTATCGGAACAATTAATAATCATAATTAATATAATTCAAACAACTAGATGAACTCCAAAACATTTACACAAGTATTGAACAAAAACAACCAAAAAAATGGGACCTGTGTTTTTGTTTGGAAGTTTTTGGATCCCTTAACAGATAAAATGAAACTAAAAAAGAACCAATAATCTTCTTTGGGCCTTTGCCTATTACATTGTTTTAACTAGAAAAAAAAGTTACAAAGAGCTAGATCTAAATCTAATATATGAGAGAGATTAAATAATAATATGAATTCATAAAACAGATTAATCAACAATGATTCTAGATTATTGTTTACTAGCTAGCAACTGTTTGATGATGATGATCTCTTGTAGAAGTGGAACGTCTCAAAGTTTCTTCAACGATTTCTTTTCCTCTTCGATTCATCATCAATTTCGACCAAAACCCATGATGGGGTTTCTTCTTTCTATCTCCATCGGCTAGAGATCTACTCGAGGTCAAGAAATTAGTGGTTGATCTTCTTTTGAACAGCGAGGACATGGAGGAAGTTGAGGTCTTTCTTGGAAAATATGGGGAAGACGAAGAAGAAGGGGAAGAAGAAGAGTAATAAGAGGATAGAGATGACAGTGAAGAAGATGAACAAGAACCCATTTTTGTGGAGGCTGTTTTGGTGGTGGAGGAACCTGTAATGGTCAAATTAGAGAGCTTTTCTCTTAGACAGAGAGAGCAAACGCCTGGTGATTGCTTGTGTTTTGGGTGCTTCCGGCACCGGCCGCCGCCGTGGTGGGAATTTCGTGCCATTGCCGCCGTCGCCGCCGCCGCATGATCCTTTAGTTTGCTCAAGTTCTTTGGCATTGTTGTTGTTGTTGTATCATTTTAAAATTGTGAAGTTGAATCTCTTTTTGCTGTTGGCGATTGATATGGTTTATATATAAAGAATTGAAATGAAAAGGGAAGAGAAAAAGTAGAAAGTGGGTGCACTTCGAGGATCTTTCATGGGCAATTTCCTCGATTTTTCTCATTTTGAAGGAAAAAAAAAAAAGAAAAAAGATTATTTGTTTTTTTTTTTTTTTTTTTTGAAAATGGGAGTTTTGACTGGTTGTGTGTACACAAGTTGGCGGAATTAAAGACCAAATTTTGAACAGCTGTGATTCGAGGAGAGGGTTTGGTGTGGGGCCACTGTCACTACCGCTTTTGAAAATTGAGCCGGACCGGACCGGACCTCCCTGCTCGACCGACCGGCCGTGAGGCCCAAGCTGGACATTTATAAATTTTTATTATAATTATATATATTTTTTCCTTCTTGTTTTTCTTCTCTTGTTTGGTTGGGCGGCGGAGAAATTAAATTAATAATATCTTTAATGGAAAATTGGAAGAAGATAACACAGCCGAACCATTTTCGTACATTAAATAAACAATTTTAGTTTAAGAAAAATGTCGGTTGAGTCAAAATTTTAATTTAATATGTAGTTTCAAAAATAATATTTTAAATTAATATGTGGAGGAATTGTGAGTAAAATTGATTTGAAATTGAGACCATGTATTTTTTTTTTTAGTTGAGATGTCAATGCTTGTATTTTTAAGAAATGGGGTTGTGGAGGGCCTGTCCTCTGCAATTCAACTTCTCTTATCCTTTTCAATTTTGCCAAGGATTCAATAAAAAAAATTCCCCAAATTTTAATCTAGAAATCTAAGGTCCTTAAAAAGAAGGTGAATTTTACAAATTATGTACTGATTATATTGAATAATCAAGTTCAAAAAATCATGTATTATTTTGCAATATAACTATTCATAAAAATCTTTAGATAGTGACAAAGAGAATAACCCTATTATTTAAAGGGGTAACCATACATTGATTGTATATAATATAAAATAATGTAATAATTGGTTAAATGAATCACATACAATATGCTTTAAAATATAGCTTGTTTTTATGTAATAATGTGGAGGGTCATGTGATAATTTTGGAAACTAAAACTAGCTAGGCTTAATTCATACAATAATACATCTGGTTGACACATTAGGGTTATATCCAAGGCAAGGGAAGTGGTTGAGCAGTTGATGAAATCCTTGGTTCACACACGTGGCCTATCTGCTGATTTAACACGTGTTTATTCTTGTACATGATAATTTTACAATATGCTCTACTTGGAACTGTTTTTGGTTGAATGGTTCCTTTCAATACAACCAATACTCAAAGTACTTTCATATATGTTTTTCATTCTACATTAGACTTTTTGCTAAAAGGAGAATGTGCTGTTTAATTTGTTGTAGCATTTGGATGTACTGCCATAAAAGGATGAATAGTTTGTTTGATAATGATCATAATGGCAAAATAAAGATAATTGAAAAATCAAGACTATAGTTTTAAATGTATTTCCTCTTGATTAGACTGTATATATAATTCTTGGGTGGATTTATATAGTTCAACTGGTTAAGATATTATAATCTCAACCAAAAGACTAGAGATTTAAATTCTCACTTCCACATATTGCTGCATTAAAAGTAAAATGTCGAATATGTGGATTATAATGAGAAGCAATAGAAAATATTGTACTCCTTCAAAATATGCCTTAAAAAAACAAAAATCACATAAAATAATAATTATATTATAATTAAAAAAAAAGGAAAAAAAGTCTTTATGGTCCCTGAGTTTTGAGGAATAAGCGCGTTTAGTCTTGAGTTTTCAAAACAGACTTTTTTAGTCCATACGTTTTGAGAAATAGGTTGAAAAGGTCTCTAAATTTTCAAAAATGACATTTTTAGTCCTTGAGTTTTTGAGAAATAAGTTTAAAAAGTCATTTTGAGTCTCTAATTTGTGTGTATAATATTGCGACAATCATGACTCATGTTGTGTAAGTCCTTCATTTGGGCTCCAAGTGGGCTTCACTTGGTCTATGATAAAACTCTCCAATCTCAACAAAATAGTCTCTAATAGTAAATTTATTTCACCAAAAAAAGAAAAAGAAAAAGAAAAGAAATATGTTGACATTCATACAAATGGAGAAGATTGTAGCTTGGCAGCAGCTGGAAGGCAGACAAGAAGTAGTTTTAAAACATTCAAAGATTAAATTAGAAATTATTGAAAGAAAGAAAGAAAATGTTGGTGGGAAAATAATGATGTAATATCGAAAAATGTGTGACAGAAATGTTGAAGATGGAGTGGACTACTACTTTTGGTCTGCAAATCTGTGACACTCGGTTTAATTTTACAACCAGGAAAACCAAGTTTCTATGGATCTGATTCCTTCCAACCTGTTCTCAATTTTTAACAACAAACACAAATAAAATTCTTTCCTATTTAAGACGATTTTGCTTTTGTTTTTACTTTCTATTTTAAAAGATACCAAATCGATTTATTTACTATTTTCTTTTTCCAATTTTCCATGTTTTTTTAAAGCACAAGTTTGTAACAACCTCTAAGTTTTGATGAAGATTTGGAAAAAATCCCCATGTTTCATAAAAAAAAAAAAAAAAAGGAAAAAGGAAATCCTTTTGAAAGGTTTACATTCAAACATTCATTCATGGGATTAGCAAATTCATTTTCTTTTCTAGCTTTGTAATTCCTCCGCTCACATCTTCTTAGAATATACATATATATTCCTTTTCTATTGAGAAGAATAAAGCTAAATTAAAACCAAAAGGACAACGAAGCGAGGTCTTAAAAACATACTCATGTCACTTTCATTTGACTAATCTTGCAGTCTTTAACTATTTAAAAAATTATGTAACTAATTGGTTAGGCTATGTGAACAACCCGAGAACTAAAGTTGGGTAGAAATAGTACTTTAAAGCTAAAGGTAAAAATTAATAGATTACCTGCCTCAAAAATAGTTAGTAAGGCACCATTACGAGAAATAGCTTGTAAGTTTGAGTTAATTAGAAAGACCTAGTCAAGGCATGAGATTAGTAAGCTTCTCAAAAGTGTTGGTCGTAGATTCAAAATTGTGCAAAACTAAATCAAGCTAATAGAAAGACTTGTCACTTTAGATTTTCTCAGAGCTAGAAACTTATAAAACATGTCAAAAGACACATTCGAGTTTCAGTTAAAGCTTGAGCCGGCTCAAAGAGAAAGACAGGAGGGAGTTAGTCACTTAACTTGCTAAACCTTAGACTAAAATTAAAACTCAAGACCAATAAAGTAGAGCTAACCAACAGCACCTAGCTGAGCCAAAGGCCTCTTTAGAGAGACGCACATGAACCACGAAATAATGCTACAAGCAACATAAGGTGAGCTTGGAAAGCAAGTCACAGGACATTCAAAAAGCTTTTTCCAAATTTCCAGCTTGAAAGATTGTCCTTGAATATTCGTGGTGGTATTTCTTCAAGTAAGTGCCCTGAAGATTTAATCTGAATTCGGATCTGTGAAGTTGAATTTGTAAGCACATAGTAGAACCACAGCTTTAACAATTTTGTTTCCTGAAATCATAGTTCATAAGGTAAAAAAAAACCGAGTCTAGAATTTGTGAAGGACAACGGACACGTCTCCATACTGGTATGATATTATCTACTTTGGACATAAACTCTCATAACTTTGCTTTTGATTCACTCCAAAAGGCCTCATCCTTGTCGTCCTTTATAAATTCATGATTCTCCTATTATCTTCCAACCAAACTTAAGGTCAAAATTAGCGGTAGAAAGTCTAGAACTAAGATCAAAATCAAACATACATAATACGATTTAAACCTAATTTTAAACTCTAAAAATCCCTAGTTTTCTTTTTAATATTAGAAGATCAAAATTTACAAAAGCCTTACCACCGTCACACCGCCCAAGATACATACAACGTGGCAATCGTCCGTCTCCTCTGCCTCTCTATAAACTCACCATCTGAACTGAAGCCTTAACAGAGCAGCGTCTTGCTAGTCTCTCGGCTTCGACAATGGCCTTTTCTACCTTCGTCTTCGCGATACTCTTCGCTTCAGTAGCTGTTTCCGCCTCTGCTCAGTCTCCGGGACCGGCGCCGGCACAATCACCGGCTCAGCGACATCCACCGACTAGGACCGCCAGTCCGCCATCGTCGAGGCTGGGTCCGACCTCGCCTCCAAAGGTTTCCGCTCTCCCTCCGATCGCCAAGTCGCATCCGCCGGTACTCGCGCCGACCGCTCCTCCTCCAGCTCCGCCTACGGCTCCTGTAACCTCTCCGGCGACTGCGATCGCCAACCCTCCGGAATTAAATCCACCACCACCACCACCGTCGGCTCCCAGTAACGGCGCCGCATCGAACGATTTTCGCCGCTGTGGATATCTTGCAGGAGTTTTCTTAGTTGTGTTGTGGCGGTGA

mRNA sequence

ATGAGCAGCGACAGGCGAAGCGTGGAACTCCGACAGCGACTCGTATCGGTTTTGCAGGCAAGACCCACAGATCTACTCGAGGTCAAGAAATTAGTGGTTGATCTTCTTTTGAACAGCGAGGACATGGAGGAAGTTGAGGTCTTTCTTGGAAAATATGGGGAAGACGAAGAAGAAGGGGAAGAAGAAGAAGAGAGCAAACGCCTGGTGATTGCTTGTGTTTTGGGTGCTTCCGGCACCGGCCGCCGCCGTGGTGGGAATTTCGTGCCATTGCCGCCGTCGCCGCCGCCGCATGATCCTTTACTTGAAAGATTGTCCTTGAATATTCGTGGTGGTATTTCTTCAAAGCAGCGTCTTGCTAGTCTCTCGGCTTCGACAATGGCCTTTTCTACCTTCGTCTTCGCGATACTCTTCGCTTCAGTAGCTGTTTCCGCCTCTGCTCAGTCTCCGGGACCGGCGCCGGCACAATCACCGGCTCAGCGACATCCACCGACTAGGACCGCCAGTCCGCCATCGTCGAGGCTGGGTCCGACCTCGCCTCCAAAGGTTTCCGCTCTCCCTCCGATCGCCAAGTCGCATCCGCCGGTACTCGCGCCGACCGCTCCTCCTCCAGCTCCGCCTACGGCTCCTGTAACCTCTCCGGCGACTGCGATCGCCAACCCTCCGGAATTAAATCCACCACCACCACCACCGTCGGCTCCCAGTAACGGCGCCGCATCGAACGATTTTCGCCGCTGTGGATATCTTGCAGGAGTTTTCTTAGTTGTGTTGTGGCGGTGA

Coding sequence (CDS)

ATGAGCAGCGACAGGCGAAGCGTGGAACTCCGACAGCGACTCGTATCGGTTTTGCAGGCAAGACCCACAGATCTACTCGAGGTCAAGAAATTAGTGGTTGATCTTCTTTTGAACAGCGAGGACATGGAGGAAGTTGAGGTCTTTCTTGGAAAATATGGGGAAGACGAAGAAGAAGGGGAAGAAGAAGAAGAGAGCAAACGCCTGGTGATTGCTTGTGTTTTGGGTGCTTCCGGCACCGGCCGCCGCCGTGGTGGGAATTTCGTGCCATTGCCGCCGTCGCCGCCGCCGCATGATCCTTTACTTGAAAGATTGTCCTTGAATATTCGTGGTGGTATTTCTTCAAAGCAGCGTCTTGCTAGTCTCTCGGCTTCGACAATGGCCTTTTCTACCTTCGTCTTCGCGATACTCTTCGCTTCAGTAGCTGTTTCCGCCTCTGCTCAGTCTCCGGGACCGGCGCCGGCACAATCACCGGCTCAGCGACATCCACCGACTAGGACCGCCAGTCCGCCATCGTCGAGGCTGGGTCCGACCTCGCCTCCAAAGGTTTCCGCTCTCCCTCCGATCGCCAAGTCGCATCCGCCGGTACTCGCGCCGACCGCTCCTCCTCCAGCTCCGCCTACGGCTCCTGTAACCTCTCCGGCGACTGCGATCGCCAACCCTCCGGAATTAAATCCACCACCACCACCACCGTCGGCTCCCAGTAACGGCGCCGCATCGAACGATTTTCGCCGCTGTGGATATCTTGCAGGAGTTTTCTTAGTTGTGTTGTGGCGGTGA

Protein sequence

MSSDRRSVELRQRLVSVLQARPTDLLEVKKLVVDLLLNSEDMEEVEVFLGKYGEDEEEGEEEEESKRLVIACVLGASGTGRRRGGNFVPLPPSPPPHDPLLERLSLNIRGGISSKQRLASLSASTMAFSTFVFAILFASVAVSASAQSPGPAPAQSPAQRHPPTRTASPPSSRLGPTSPPKVSALPPIAKSHPPVLAPTAPPPAPPTAPVTSPATAIANPPELNPPPPPPSAPSNGAASNDFRRCGYLAGVFLVVLWR

Homology

[Close]

BLAST of Spg033796 vs. NCBI nr
Match: TXG52738.1 (hypothetical protein EZV62_021907 [Acer yangbiense])

HSP 1 Score: 56.2 bits (134), Expect = 4.8e-04
Identity = 52/133 (39.10%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 126 MAFSTFVFAILFASVAVSASAQSPGPAPAQSPAQRHPPTRTASPPSSRLGPTSPPKVSAL 185
           MA+S+FV  +L + VA SA AQ+PGPAP +SP    P   + +P S+   P   PKV A 
Sbjct: 1   MAYSSFVCVLLLSLVAASAFAQAPGPAPTRSPTASAP---SPAPKSATPAPAQAPKVDAP 60

Query: 186 PPIAKSHPPVLAPTAPPPAPPTAPVTSPATAIANPPELNPPPPPPSAPSNGAASNDFRRC 245
            P   + PP  + + PP + PT    +P     N P  NP   P S P NGAA N     
Sbjct: 61  TPSPAATPP--SVSNPPTSTPTVSPPAPNGPSGNSPTGNPAGAPSSPPGNGAALNRIAVA 120

Query: 246 GYLAGVFLVVLWR 259
           GY++G+F  V ++
Sbjct: 121 GYVSGLFATVAFK 128

[Close]

BLAST of Spg033796 vs. NCBI nr
Match: XP_021900554.1 (classical arabinogalactan protein 10 [Carica papaya])

HSP 1 Score: 55.8 bits (133), Expect = 6.2e-04
Identity = 56/139 (40.29%), Postives = 74/139 (53.24%), Query Frame = 0


Query: 126 MAFSTFVFAILFASVAVSASAQSPGPAPAQSP--AQRHPPTRTASPPSSRLGPTSPPKVS 185
           MA  TF+  +L A  + SA AQ+PG AP QSP  A   P  + A+P  S + P      +
Sbjct: 1   MANETFLLLLLLALASHSALAQAPGAAPNQSPPAATPAPAPKAAAPTPSVMAPPPATTPT 60

Query: 186 ALPPIAKSHPPVLAPTAP---PPAPPTAPVTSPATAIANPPELNPPP--PPPSAPSNGAA 245
             P +A + PP  APT+P   PPAPPT+P ++P+T +   P ++ PP   P   P NGAA
Sbjct: 61  TPPTVAPTVPPASAPTSPTISPPAPPTSPASAPSTPVPPTPSISNPPGEAPAVTPGNGAA 120

Query: 246 SNDFRRCGYLAG-VFLVVL 257
            N     G  AG VF   L
Sbjct: 121 LNRISAAGSFAGAVFAAAL 139

The following BLAST results are available for this feature:

BLAST of Spg033796 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG52738.1	4.8e-04	39.10	hypothetical protein EZV62_021907 [Acer yangbiense]	[more]
XP_021900554.1	6.2e-04	40.29	classical arabinogalactan protein 10 [Carica papaya]	[more]

BLAST of Spg033796 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg033796 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg033796 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 209..234 score: 33.85 coord: 142..163 score: 24.55 coord: 91..107 score: 27.06 coord: 163..179 score: 34.12 coord: 190..207 score: 40.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg033796.1	Spg033796.1	mRNA