Spg033710 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg033710
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	SANT domain-containing protein
Location	scaffold13: 38883049 .. 38885671 (+)
RNA-Seq Expression	Spg033710
Synteny	Spg033710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCATCTTCAAGCTCGAACGTGTGGACTTCAAAGCAAAACAAGCTGTTCGAGAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCGAGAGCCGTCGGCGGAAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGCTGCTGGTGGAGGACGTCCACAATATTGAGACCGGCAGAATTCCTTTGCCCAATTACTCTAACTTTCTTGATGAAGAACAAAGGCAATCTCTCTCTCTCTCTCTTTTTCTATTCAATCTATTTGGGGTAAGATCTTGATTTTTTTTTTTTTTTTTTTTTTGAGATACATCAACATTTGGGGTGGGAGATTCGAACTTCTGACCTCTTGGTCGAGAGTACATGTCAATTACGGTTGAGCTTTGACGATCTTGAAATTAATTAGTATACTTTGATTGTTGATTTCATCAAAACTTAGCCATACATACTTGGTTGCAGCTTCTATTAACTTTCGGATGTGGTGTATTTTTTTAGTGGCAAAAAGAATTTTAGTTAGGACTTCTTTTAAATACAAAAGAAATTAATAGACAAATAAAAAATGCACTAGGGTAGCCAACATGACCGTAGCTTAATTGGCATAACTCTTGTATTAACGACCAAAAAGTCTGTGGTTCTAGTTCGATAAACATTTGATTTTTTGTTTTTTTGTTTTTTAAAATTAAGCTTATAAACACTACTACCTTCCACCTACAAGTTTTAGGAATTTGTTAGGAATTCAAATGTGTCTTTAACAAAAATGAAGACCGTTGTAAGAAAATTGGATGAAAACAAGCATAATTTTCAAAAACCAAAAATCAAATAGTTATCAAATGAGACCCAAGAAATCTTACTAACCGATGTTAGGCAAGTATTGTTTTTCTTAATATATGTGTGTTCAAAGCATTAGCTAGGATGATAAATGAGAGAAAAAGTATATATTATTATTTTATAGTTATTTAGATGAATAAAAATATGTCGCTATCAATTAAAAGGAGTGATTCCCTTATGAATTGGTTTAGATTGAGATATTCTTTAAACTCATGCAATTGTTCTTCCGTTATAAATTTCTTTAACTAAAAACGACCTTTATTAAATAAACTCAATCTAACCCGACCATAAAATTCAAGAAATCACTCTCAACCATTGAAATTAAGTTTAAGGACTCACTTTCAATATATTTTATGAAAAAAATAATAATTTTAAAAGTTGTTGGGTATAAATAATCTTAAATAGAATTATAGAATGAAATAAAATTAATGTTTAGAAGTAATAAGTGGGAGTGCTAATTAATGTCTAATTATTTTGGGGACTTTTATTCATTGATCAAAATGCTAATAGTGGATGCTTTCTCTTTGGTTTATGCAGATTGAAGGGTCTAAAGCTACAATGATATTGCAACAACAAACAAGATTGAAGTAAAAGAGAATAAAAGCTATTGGATTTCAACCAAAGCTCCAAACTGAAAAGCACTTTGTAGATATATATATAAAAGAAGAATATCATTCTACATGTGAATTATATGGTTTTTTTCCACTATATATATGAGGCATTTATGCTGTATAAAATGCCATATATTTTGATTAATTTGCTATATTTTATGTAGCTAATTAGTCTCATCCTTTTGCAATATAAGTATAATATACATAAAAGTTCATTGGGGAAATTAATGGAAGTGTATAGTGAATGATGTTTTTTTTTTTTTTTTTTTTTCCTTTCCATAATGTCAAATATGTTATTAAAGGAATATTTAGAAATGTAACAAAATATTGATAATATGAATATAAAAATTAATAATTGAAGTTCTTTTTTTCTTTTTCTTGAGAATATCACACAATACAAATAGAGGAGTGGTTTGGATTTTCAACCTAGCCTTAACTACTATGATACATTCATGTTAGGTGATTAATAATTAATTTAAGGAGAAGTCCAATTTATTTATTAATTTAAATAGTTTTGATGAGTTCATGTATTTTTACATTTTATTTAAAATTTTGTCCAAATTTAGTATTTACCTTCTTGCATAGAATCAAGAGCTTTTTTTTTTTTTTTTTTTTTTGCAAATGGAAGGTTAATTAGGGCATGTTTGGGCTGCCATTTTCCAAAGTCCGGATTTTCTACACCCAACTTCGATAGTGAACACTGTTGAAGTCGAACAGTAACCTTCATTTTCACGCTTCTCTCTCCCACCTCGTTTCTCTCTCGTCTAGTTTCACGCATCTCTCTCCCTTTTTGTTTCTCTCATTCTTTGTTTCCATCCTACCGTCGATGTCTTCAGATTTGGGGTGGAGTGGGTTTTTTTTCGGTTTTTTTTTCATATTCGGTTTTGAAGAAGAGAAGAGGATGGGTTTTTCCAGTTTTCTACTGGGTGGATTTTTTTTCTAGGCGGTGGAAATGGGGGTGGCAACGAAGAGAAGAAAAGGGGATGGAAAAAATGGGGGTGGGGGAGGGTTTGTTGAGGAAGGGGAAGATGGGAGGGGTGGGGGAAGAGTTTGTTGAGGAAAAGAAGAAAATGAGAAGGGTGGCGCAGTGGTTGTCGATGATGAAGAAGAAAGCAACGGCAGCGGCGGCAACCGACGAGAAGAGGAGAGAGAGGAATCGATGGTAG

mRNA sequence

ATGAGTTCTTCATCTTCAAGCTCGAACGTGTGGACTTCAAAGCAAAACAAGCTGTTCGAGAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCGAGAGCCGTCGGCGGAAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGCTGCTGGTGGAGGACGTCCACAATATTGAGACCGGCAGAATTCCTTTGCCCAATTACTCTAACTTTCTTGATGAAGAACAAAGGCAATCTCTCTCTCTCTCTCTTTTTCTATTCAATCTATTTGGGATTGAAGGGTCTAAAGCTACAATGATATTGCAACAACAAACAAGATTGAAGCGGTGGAAATGGGGGTGGCAACGAAGAGAAGAAAAGGGGATGGAAAAAATGGGGGTGGGGGAGGGTTTGTTGAGGAAGGGGAAGATGGGAGGGGTGGGGGAAGAGTTTGTTGAGGAAAAGAAGAAAATGAGAAGGGTGGCGCAGTGGTTGTCGATGATGAAGAAGAAAGCAACGGCAGCGGCGGCAACCGACGAGAAGAGGAGAGAGAGGAATCGATGGTAG

Coding sequence (CDS)

ATGAGTTCTTCATCTTCAAGCTCGAACGTGTGGACTTCAAAGCAAAACAAGCTGTTCGAGAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCGAGAGCCGTCGGCGGAAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGCTGCTGGTGGAGGACGTCCACAATATTGAGACCGGCAGAATTCCTTTGCCCAATTACTCTAACTTTCTTGATGAAGAACAAAGGCAATCTCTCTCTCTCTCTCTTTTTCTATTCAATCTATTTGGGATTGAAGGGTCTAAAGCTACAATGATATTGCAACAACAAACAAGATTGAAGCGGTGGAAATGGGGGTGGCAACGAAGAGAAGAAAAGGGGATGGAAAAAATGGGGGTGGGGGAGGGTTTGTTGAGGAAGGGGAAGATGGGAGGGGTGGGGGAAGAGTTTGTTGAGGAAAAGAAGAAAATGAGAAGGGTGGCGCAGTGGTTGTCGATGATGAAGAAGAAAGCAACGGCAGCGGCGGCAACCGACGAGAAGAGGAGAGAGAGGAATCGATGGTAG

Protein sequence

MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSNFLDEEQRQSLSLSLFLFNLFGIEGSKATMILQQQTRLKRWKWGWQRREEKGMEKMGVGEGLLRKGKMGGVGEEFVEEKKKMRRVAQWLSMMKKKATAAAATDEKRRERNRW

Homology

[Close]

BLAST of Spg033710 vs. NCBI nr
Match: XP_023002559.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 8.7e-32
Identity = 76/89 (85.39%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSSNVW+SKQNK+FENALTVYDKDSPDRWQKLA AVGGKTAEEVKRHYE+LVEDVH
Sbjct: 5  SSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVH 64

Query: 62 NIETGRIPLPN--------YSNFLDEEQR 83
          NIE GRIPLPN        YSNFLDEEQR
Sbjct: 65 NIEIGRIPLPNYSNSSKQYYSNFLDEEQR 93

[Close]

BLAST of Spg033710 vs. NCBI nr
Match: XP_008444713.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-31
Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYE+LVEDVH
Sbjct: 7  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVH 66

Query: 62 NIETGRIPLPNYS------NFLDEEQR 83
          NIETG++PLPNYS      NFLDEEQR
Sbjct: 67 NIETGKVPLPNYSKHYSYNNFLDEEQR 93

[Close]

BLAST of Spg033710 vs. NCBI nr
Match: XP_031737271.1 (protein RADIALIS-like 4 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-31
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYE+LVEDVH
Sbjct: 7  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVH 66

Query: 62 NIETGRIPLPNYS-------NFLDEEQR 83
          NIETG++PLPNYS       NF+DEEQR
Sbjct: 67 NIETGKVPLPNYSKHYSYNNNFVDEEQR 94

[Close]

BLAST of Spg033710 vs. NCBI nr
Match: XP_038886301.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-30
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLA A+GGKTAEEVK HY++LVEDVH
Sbjct: 6  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLASAIGGKTAEEVKTHYDMLVEDVH 65

Query: 62 NIETGRIPLPNYS------NFLDEEQR 83
          NIETGR+PLPNYS      NFLDEEQR
Sbjct: 66 NIETGRVPLPNYSKHYSYNNFLDEEQR 92

[Close]

BLAST of Spg033710 vs. NCBI nr
Match: XP_022997502.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-30
Identity = 72/90 (80.00%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYE+LVEDVH
Sbjct: 4  SSSSSSSSCWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVH 63

Query: 62 NIETGRIPLPNYS---------NFLDEEQR 83
          NIETGR+PLPNYS          FLDEEQR
Sbjct: 64 NIETGRVPLPNYSKPSKHCSSNTFLDEEQR 93

[Close]

BLAST of Spg033710 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.1e-24
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          S+S SS + WT  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ 
Sbjct: 3  SNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLI 62

Query: 62 NIETGRIPLPNYSNF 77
          NIETGR+PLPNY  F
Sbjct: 63 NIETGRVPLPNYKTF 77

[Close]

BLAST of Spg033710 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSS SSS+ WTSKQNK+FE AL VYDKD+PDRWQ +A+AVG K+AEEVKRHY++LVED+ 
Sbjct: 3  SSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLM 62

Query: 62 NIETGRIPLPNY 74
          NIE   +PLP Y
Sbjct: 63 NIEQDLVPLPKY 74

[Close]

BLAST of Spg033710 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-22
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          S SS SS  WT+KQNK FE AL  YD+D+P+RWQ +A+ VGGKT EEVKRHYELLV+D++
Sbjct: 5  SMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDIN 64

Query: 62 NIETGRIPLPNY 74
          +IE G +P PNY
Sbjct: 65 SIENGHVPFPNY 76

[Close]

BLAST of Spg033710 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-22
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          S+S SSS  WT K+NKLFE AL  YD+D+PDRW  +ARAVGGK+AEEV+RHYELL+ DV+
Sbjct: 3  SNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVN 62

Query: 62 NIETGRIPLPNY 74
          +IE+GR P PNY
Sbjct: 63 DIESGRYPHPNY 74

[Close]

BLAST of Spg033710 vs. ExPASy Swiss-Prot
Match: Q1G3C4 (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-21
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDV 60
          M+SSS S++ WT++++K FE AL  +DKD+PDRWQK+ARAVGGK+ EEVKRHYELL+ DV
Sbjct: 1  MASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDV 60

Query: 61 HNIETGRIPLPNYSN 76
          ++IE+GR P P Y N
Sbjct: 61 NDIESGRYPQPRYRN 75

[Close]

BLAST of Spg033710 vs. ExPASy TrEMBL
Match: A0A0A0LNL9 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 6.5e-33
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYE+LVEDVH
Sbjct: 7  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVH 66

Query: 62 NIETGRIPLPNYS-------NFLDEEQRQSL 86
          NIETG++PLPNYS       NF+DEEQRQSL
Sbjct: 67 NIETGKVPLPNYSKHYSYNNNFVDEEQRQSL 97

[Close]

BLAST of Spg033710 vs. ExPASy TrEMBL
Match: A0A6J1KQS6 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.2e-32
Identity = 76/89 (85.39%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSSNVW+SKQNK+FENALTVYDKDSPDRWQKLA AVGGKTAEEVKRHYE+LVEDVH
Sbjct: 5  SSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVH 64

Query: 62 NIETGRIPLPN--------YSNFLDEEQR 83
          NIE GRIPLPN        YSNFLDEEQR
Sbjct: 65 NIEIGRIPLPNYSNSSKQYYSNFLDEEQR 93

[Close]

BLAST of Spg033710 vs. ExPASy TrEMBL
Match: A0A1S3BBR2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYE+LVEDVH
Sbjct: 7  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVH 66

Query: 62 NIETGRIPLPNYS------NFLDEEQR 83
          NIETG++PLPNYS      NFLDEEQR
Sbjct: 67 NIETGKVPLPNYSKHYSYNNFLDEEQR 93

[Close]

BLAST of Spg033710 vs. ExPASy TrEMBL
Match: A0A6J1K580 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 72/90 (80.00%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYE+LVEDVH
Sbjct: 4  SSSSSSSSCWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVH 63

Query: 62 NIETGRIPLPNYS---------NFLDEEQR 83
          NIETGR+PLPNYS          FLDEEQR
Sbjct: 64 NIETGRVPLPNYSKPSKHCSSNTFLDEEQR 93

[Close]

BLAST of Spg033710 vs. ExPASy TrEMBL
Match: A0A6J1CRB5 (protein RADIALIS-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014035 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDV 60
          M SSSSSS++W+SKQNKLFENALTVYDK+SP+RWQ LARAVGGKTAEEVK HY++LVEDV
Sbjct: 1  MGSSSSSSSLWSSKQNKLFENALTVYDKESPERWQNLARAVGGKTAEEVKTHYDMLVEDV 60

Query: 61 HNIETGRIPLPN-----YSNFLDEEQR-QSLSL 88
          HNIE+GR+PLPN     YSNFL+E+QR +SL L
Sbjct: 61 HNIESGRVPLPNYNTKQYSNFLEEQQRLKSLKL 93

[Close]

BLAST of Spg033710 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-25
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          S+S SS + WT  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ 
Sbjct: 3  SNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLI 62

Query: 62 NIETGRIPLPNYSNF 77
          NIETGR+PLPNY  F
Sbjct: 63 NIETGRVPLPNYKTF 77

[Close]

BLAST of Spg033710 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-25
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          S+S SS + WT  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ 
Sbjct: 3  SNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLI 62

Query: 62 NIETGRIPLPNYSNF 77
          NIETGR+PLPNY  F
Sbjct: 63 NIETGRVPLPNYKTF 77

[Close]

BLAST of Spg033710 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-24
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          SSS SSS+ WTSKQNK+FE AL VYDKD+PDRWQ +A+AVG K+AEEVKRHY++LVED+ 
Sbjct: 3  SSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLM 62

Query: 62 NIETGRIPLPNY 74
          NIE   +PLP Y
Sbjct: 63 NIEQDLVPLPKY 74

[Close]

BLAST of Spg033710 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-23
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 2  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVH 61
          S SS SS  WT+KQNK FE AL  YD+D+P+RWQ +A+ VGGKT EEVKRHYELLV+D++
Sbjct: 5  SMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDIN 64

Query: 62 NIETGRIPLPNY 74
          +IE G +P PNY
Sbjct: 65 SIENGHVPFPNY 76

[Close]

BLAST of Spg033710 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDV 60
          M+SSS S++ WT++++K FE AL  +DKD+PDRWQK+ARAVGGK+ EEVKRHYELL+ DV
Sbjct: 1  MASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDV 60

Query: 61 HNIETGRIPLPNYSN 76
          ++IE+GR P P Y N
Sbjct: 61 NDIESGRYPQPRYRN 75

The following BLAST results are available for this feature:

BLAST of Spg033710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002559.1	8.7e-32	85.39	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
XP_008444713.1	1.5e-31	83.91	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_031737271.1	4.3e-31	81.82	protein RADIALIS-like 4 [Cucumis sativus]	[more]
XP_038886301.1	2.1e-30	81.61	protein RADIALIS-like 3 [Benincasa hispida]	[more]
XP_022997502.1	3.6e-30	80.00	protein RADIALIS-like 4 [Cucurbita maxima]	[more]

BLAST of Spg033710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	4.1e-24	69.33	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	1.0e-22	70.83	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	8.5e-22	65.28	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	8.5e-22	68.06	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1G3C4	1.9e-21	64.00	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]

BLAST of Spg033710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNL9	6.5e-33	82.42	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 S...	[more]
A0A6J1KQS6	4.2e-32	85.39	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1	[more]
A0A1S3BBR2	7.2e-32	83.91	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1	[more]
A0A6J1K580	1.8e-30	80.00	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1	[more]
A0A6J1CRB5	1.1e-29	76.34	protein RADIALIS-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC11101403...	[more]

BLAST of Spg033710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.1	2.9e-25	69.33	RAD-like 6	[more]
AT1G75250.2	2.9e-25	69.33	RAD-like 6	[more]
AT1G19510.1	7.1e-24	70.83	RAD-like 5	[more]
AT4G39250.1	6.0e-23	65.28	RAD-like 1	[more]
AT2G18328.1	1.3e-22	64.00	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 7..59 e-value: 3.1E-6 score: 36.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 3..57 score: 6.214041
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..57 e-value: 0.00222104 score: 32.9326
None	No IPR available	GENE3D	1.10.10.60		coord: 1..70 e-value: 1.0E-22 score: 81.7
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 6..86
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 6..86
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 6..61 score: 9.568096
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 9..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg033710.1	Spg033710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity