Spg033649 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg033649
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Deoxyuridine 5'-triphosphate nucleotidohydrolase
Location	scaffold13: 38943169 .. 38945175 (-)
RNA-Seq Expression	Spg033649
Synteny	Spg033649

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGTTTCCTTTCCTTTCTTTAATTCCTTCCACACGCAGTAGCATGCCTCTTCGACCTTCACCCTTTCCCTCCCAATCGCAAAAGCCGCTCCCAGCTTCTCTCTGTTCAACCACCGCCGCCGTTCAACCACCATTGCTCGCACTTTCATTGGCGCATCGCAGCAGCCAAGCCAACAAGGTGGATTTTCGTTTTACTTTCTCCTTTCTCTCTTTTTGTTTTTGTATTTTTTTGTTTGTTTGAAACTCTGGTTTTTACTTTGTCATTTTTTTCCTTTTCAGTTTTCACTCCTCTTAAATCGAGATTTAAATTGAAACATTACTTCTGCTCCGTTCGTCTGCTTGATTAGATCTAACTCTTTGTGATACTGTTTGCAAAATAAACGTGCAGTTTTGATTAAATTGTGTAAATTGTTTGTAGCATCTCTTGGAGCAATTACGGTGCAAGTGAGAGTCTCTGGTCTTCCTCTATTTAAACTCGACCCACCTTCTTCCAACTTTGCTCCAAACCACATCAATTTCAGATCAAGTTTCCATTTCAATCGTTTCTTTCGAACCCTAACAATGGCGCAGAACAGCAGTTCGGAAGTCAATGAACCGTCGCCCAAGGTCCCGAAAGTCGCTCACGAGAACGGTGAATCTGAAAAATATTGCAACGCATCGACGTTTCTCAGAGTGAAGAAGCTGTCTGAGAAAGCTGTGCTGCCAACGCGTGCCTCCGCTCTCTCCGCTGGTTACGATCTTTCCAGGTTAATCATTTGAGACTGTTGTTTCCATGAACTGGTAAAGGAAATTTTAGTTCTCGACAGTTACATTTCTTTTTGTGTGTTAATATAGTGCAACTGAGACAAAGGTCCCTGCTCGAGGAAAAGTCTTGGTTCCGACTGACTTGAGCATCGCGATTCCGGAAGGAACCTACGCTCGGATAGGTATTTCTTCATCGATTTCTGCACTGTCTCTTGCGCTTTTACTAAGTTTCTTAAACTGATGCTCGAGTATTTTGGATATTTTGCAGCGCCGCGATCGGGCTTGGCTTTGAAGCATGCGATCGATGTTGGCGCGGGTGTGATAGATGCTGATTACAGAGGACCTGTGGGCGTGATACTATTCAATCACTCAGATGTGGATTTTGAAGTGAAAGCGGGCGACAGGATCGCGCAACTGATTCTTGAGAAAATAGTGACGCCGAAGGTTTTGGAGGTCCAGGATTTGGATTTGACTGCTAGAGGTGAAGGTGGCTTTGGCTCTACAGGTGTTTGAGAGATCTCCACCGGCTGCTTGGGAATGGGGGATTTCCGGTTCGTTTTTCCCATTTTGCATCTCAAATCGATCAAACTTTTGATCTCTGAGGAAGTGATTGGAGAAACTTTTTTGGTTGAACATATGATATCATCAGATTAGGAAAAAGAACATTTTGTATCTTGCCAGTTCAATCAATGAATTACCGAATTTCCATCTATTTTGCAATTCAAATGTCTGATATAGATAAAGGAAAAAAAAAGGTCGAAACAAGAAGAAAAGAAGAATGGTCAAAAGAAAAGCTTGAAGAGAAAAAAGGAACGGTTGGAAAAAGATCAAAGAAATGGATAAGGGTCAAGAGAAAAAAGAAAAGGTAGAAAAAAATTTCCATACTTGTTTCTTTTTTCCTCCAATACCTAATACGCTTTCTTGATTATAAGTTAATTTTTAAGATGATTTAAAAAACAAGTATTCTTTTACCTGTAATTCTTAGTAAATAGAAATCAAGTATTTTTACCTATAATTCTTAGATAATGTCAATTAACTATGTTATTAAACACATCTTGCCTTGCACTTTAGCAACACCGATGGAGATGAATCCTTGGAATGAGTCGAATATTGAAGGAAGAACAAACAGAGACTGGTAATCTGGAAAAACTGAACGGAAGCAATGCAATGCTTGCAACAATTTATTTTCATTTCAAAGCCATGAAAATGCATCTGTTCCCCATGGTGAAAGCGGGGTCAGTGCAATTCTACACATAGCATGA

mRNA sequence

ATGGCGCAGAACAGCAGTTCGGAAGTCAATGAACCGTCGCCCAAGGTCCCGAAAGTCGCTCACGAGAACGGTGAATCTGAAAAATATTGCAACGCATCGACGTTTCTCAGAGTGAAGAAGCTGTCTGAGAAAGCTGTGCTGCCAACGCGTGCCTCCGCTCTCTCCGCTGGTTACGATCTTTCCAGCCATGAAAATGCATCTGTTCCCCATGGTGAAAGCGGGGTCAGTGCAATTCTACACATAGCATGA

Coding sequence (CDS)

ATGGCGCAGAACAGCAGTTCGGAAGTCAATGAACCGTCGCCCAAGGTCCCGAAAGTCGCTCACGAGAACGGTGAATCTGAAAAATATTGCAACGCATCGACGTTTCTCAGAGTGAAGAAGCTGTCTGAGAAAGCTGTGCTGCCAACGCGTGCCTCCGCTCTCTCCGCTGGTTACGATCTTTCCAGCCATGAAAATGCATCTGTTCCCCATGGTGAAAGCGGGGTCAGTGCAATTCTACACATAGCATGA

Protein sequence

MAQNSSSEVNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGYDLSSHENASVPHGESGVSAILHIA

Homology

[Close]

BLAST of Spg033649 vs. NCBI nr
Match: XP_022144283.1 (deoxyuridine 5'-triphosphate nucleotidohydrolase [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 4.8e-19
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1   MAQNSSSEVNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGYDL 60
           MAQN SSEVNEPSPKVPK+AHENGESEK  + ST LRVKKLSEKAVLP+RASALSAGYDL
Sbjct: 53  MAQNCSSEVNEPSPKVPKLAHENGESEKISSLSTLLRVKKLSEKAVLPSRASALSAGYDL 112

Query: 61  SSHENASVP 70
           SS     VP
Sbjct: 113 SSATETKVP 121

[Close]

BLAST of Spg033649 vs. NCBI nr
Match: XP_038884972.1 (deoxyuridine 5'-triphosphate nucleotidohydrolase [Benincasa hispida])

HSP 1 Score: 87.4 bits (215), Expect = 6.1e-14
Identity = 50/71 (70.42%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 1   MAQNSSSEVNEP--SPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGY 60
           MAQN +SEVNE   SPKV K+ HENGESE   ++ST LRVKKLSEKA+LP RASALSAGY
Sbjct: 50  MAQNGTSEVNESLRSPKVQKLTHENGESENVSHSSTLLRVKKLSEKAILPLRASALSAGY 109

Query: 61  DLSSHENASVP 70
           DLSS     VP
Sbjct: 110 DLSSAIEMKVP 120

[Close]

BLAST of Spg033649 vs. NCBI nr
Match: XP_023546399.1 (LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 6.8e-13
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1   MAQNSSSEVNEP--SPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGY 60
           MAQN  SE N    SPKVPK+AHE+GESE++  +ST LRVKKLS+ AVLP+RASALSAGY
Sbjct: 47  MAQNCPSEDNVTLRSPKVPKLAHESGESERFSYSSTLLRVKKLSDNAVLPSRASALSAGY 106

Query: 61  DLSSHENASVPHGESGV 76
           DLSS ++  +P    G+
Sbjct: 107 DLSSAKDTIIPSRGRGL 123

[Close]

BLAST of Spg033649 vs. NCBI nr
Match: KAG6598436.1 (hypothetical protein SDJN03_08214, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 6.8e-13
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1  MAQNSSSEVNEP--SPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGY 60
          MAQN  SE N    SPKVPK+AHE+GESE++  +ST LRVKKLS+ AVLP+RASALSAGY
Sbjct: 1  MAQNCPSEDNVTLRSPKVPKLAHESGESERFSYSSTLLRVKKLSDNAVLPSRASALSAGY 60

Query: 61 DLSSHENASVPHGESGV 76
          DLSS ++  +P    G+
Sbjct: 61 DLSSAKDTIIPSRGRGL 77

[Close]

BLAST of Spg033649 vs. NCBI nr
Match: XP_022996788.1 (LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 6.8e-13
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1   MAQNSSSE--VNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGY 60
           MAQN  SE  V+  SPKVPK+AHE+GESE++  +ST LRVKKLS+ AVLP+RASALSAGY
Sbjct: 47  MAQNCPSEDNVSLRSPKVPKLAHESGESERFSYSSTLLRVKKLSDNAVLPSRASALSAGY 106

Query: 61  DLSSHENASVPHGESGV 76
           DLSS ++  +P    G+
Sbjct: 107 DLSSAKDTIIPSRGRGL 123

[Close]

BLAST of Spg033649 vs. ExPASy Swiss-Prot
Match: P32518 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.5e-10
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 1  MAQN--SSSEVNEPSPKVPKVAH-ENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAG 60
          MA+N  +S E+ EPSPKV K+ H ENG          F RVKKLSE AVLP+RAS+L+AG
Sbjct: 1  MAENQINSPEITEPSPKVQKLDHPENGN-------VPFFRVKKLSENAVLPSRASSLAAG 60

Query: 61 YDLSSHENASVP-HGESGVSAILHIA 83
          YDLSS     VP  G++ V   L IA
Sbjct: 61 YDLSSAAETKVPARGKALVPTDLSIA 79

[Close]

BLAST of Spg033649 vs. ExPASy Swiss-Prot
Match: Q9STG6 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Arabidopsis thaliana OX=3702 GN=DUT PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 9  VNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGYDLSSHENASV 68
          VNEPSPK+ K+       +   + S F +VKKLSEKAV+PTR S LSAGYDLSS  ++ V
Sbjct: 4  VNEPSPKLQKLDRNGIHGDS--SPSPFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKV 63

Query: 69 P-HGESGVSAILHIA 83
          P  G++ +   L IA
Sbjct: 64 PARGKALIPTDLSIA 76

[Close]

BLAST of Spg033649 vs. ExPASy Swiss-Prot
Match: Q10FF9 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Oryza sativa subsp. japonica OX=39947 GN=DUT PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-05
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 2  AQNSSSEVNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGYDLS 61
          A  + S V EP  K+ KVA               L+VKKLSE AVLP+R SAL+AGYDLS
Sbjct: 13 AAAADSAVQEPPHKIAKVA-------------PLLKVKKLSENAVLPSRGSALAAGYDLS 72

Query: 62 SHENASVP-HGESGVSAILHIA 83
          S     VP  G++ V   L IA
Sbjct: 73 SAAEVVVPARGKAMVPTDLSIA 81

[Close]

BLAST of Spg033649 vs. ExPASy TrEMBL
Match: A0A6J1CSW8 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Momordica charantia OX=3673 GN=LOC111014003 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1   MAQNSSSEVNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGYDL 60
           MAQN SSEVNEPSPKVPK+AHENGESEK  + ST LRVKKLSEKAVLP+RASALSAGYDL
Sbjct: 53  MAQNCSSEVNEPSPKVPKLAHENGESEKISSLSTLLRVKKLSEKAVLPSRASALSAGYDL 112

Query: 61  SSHENASVP 70
           SS     VP
Sbjct: 113 SSATETKVP 121

[Close]

BLAST of Spg033649 vs. ExPASy TrEMBL
Match: A0A6J1KC08 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cucurbita maxima OX=3661 GN=LOC111491919 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1   MAQNSSSE--VNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGY 60
           MAQN  SE  V+  SPKVPK+AHE+GESE++  +ST LRVKKLS+ AVLP+RASALSAGY
Sbjct: 47  MAQNCPSEDNVSLRSPKVPKLAHESGESERFSYSSTLLRVKKLSDNAVLPSRASALSAGY 106

Query: 61  DLSSHENASVPHGESGV 76
           DLSS ++  +P    G+
Sbjct: 107 DLSSAKDTIIPSRGRGL 123

[Close]

BLAST of Spg033649 vs. ExPASy TrEMBL
Match: A0A6J1HDM4 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cucurbita moschata OX=3662 GN=LOC111462556 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1   MAQNSSSE--VNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGY 60
           MAQN  SE  V+  SPKVPK+AHE+GESE++  +ST LRVKKLS+ AVLP+RASALSAGY
Sbjct: 47  MAQNCPSEDNVSLRSPKVPKLAHESGESERFSYSSTLLRVKKLSDNAVLPSRASALSAGY 106

Query: 61  DLSSHENASVPHGESGV 76
           DLSS ++  +P    G+
Sbjct: 107 DLSSAKDTIIPSRGRGL 123

[Close]

BLAST of Spg033649 vs. ExPASy TrEMBL
Match: A0A5A7VA97 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005830 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-13
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MAQNSSSEVNEP--SPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGY 60
          MAQN +SEV E   SPKV K+ H+NGESE    +S  LRVKKLSEKAVLP+RASALSAGY
Sbjct: 1  MAQNGTSEVQESLRSPKVQKLTHDNGESENVSKSSMLLRVKKLSEKAVLPSRASALSAGY 60

Query: 61 DLSSHENASVP 70
          DLSS     VP
Sbjct: 61 DLSSAVETKVP 71

[Close]

BLAST of Spg033649 vs. ExPASy TrEMBL
Match: A0A1S3BBU3 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cucumis melo OX=3656 GN=LOC103487963 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-13
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1   MAQNSSSEVNEP--SPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGY 60
           MAQN +SEV E   SPKV K+ H+NGESE    +S  LRVKKLSEKAVLP+RASALSAGY
Sbjct: 83  MAQNGTSEVQESLRSPKVQKLTHDNGESENVSKSSMLLRVKKLSEKAVLPSRASALSAGY 142

Query: 61  DLSSHENASVP 70
           DLSS     VP
Sbjct: 143 DLSSAVETKVP 153

[Close]

BLAST of Spg033649 vs. TAIR 10
Match: AT3G46940.1 (DUTP-PYROPHOSPHATASE-LIKE 1 )

HSP 1 Score: 60.1 bits (144), Expect = 9.8e-10
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 9  VNEPSPKVPKVAHENGESEKYCNASTFLRVKKLSEKAVLPTRASALSAGYDLSSHENASV 68
          VNEPSPK+ K+       +   + S F +VKKLSEKAV+PTR S LSAGYDLSS  ++ V
Sbjct: 4  VNEPSPKLQKLDRNGIHGDS--SPSPFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKV 63

Query: 69 P-HGESGVSAILHIA 83
          P  G++ +   L IA
Sbjct: 64 PARGKALIPTDLSIA 76

The following BLAST results are available for this feature:

BLAST of Spg033649 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144283.1	4.8e-19	81.16	deoxyuridine 5'-triphosphate nucleotidohydrolase [Momordica charantia]	[more]
XP_038884972.1	6.1e-14	70.42	deoxyuridine 5'-triphosphate nucleotidohydrolase [Benincasa hispida]	[more]
XP_023546399.1	6.8e-13	62.34	LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase [Cucurbita...	[more]
KAG6598436.1	6.8e-13	62.34	hypothetical protein SDJN03_08214, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022996788.1	6.8e-13	62.34	LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase [Cucurbita...	[more]

BLAST of Spg033649 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32518	9.5e-10	53.49	Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Solanum lycopersicum OX=4081...	[more]
Q9STG6	1.4e-08	50.67	Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Arabidopsis thaliana OX=3702...	[more]
Q10FF9	1.4e-05	46.34	Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Oryza sativa subsp. japonica...	[more]

BLAST of Spg033649 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSW8	2.3e-19	81.16	Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Momordica charantia OX=3673 ...	[more]
A0A6J1KC08	3.3e-13	62.34	Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1HDM4	3.3e-13	62.34	Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cucurbita moschata OX=3662 G...	[more]
A0A5A7VA97	5.6e-13	67.61	Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BBU3	5.6e-13	67.61	Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Spg033649 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46940.1	9.8e-10	50.67	DUTP-PYROPHOSPHATASE-LIKE 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036157	dUTPase-like superfamily	GENE3D	2.70.40.10		coord: 18..80 e-value: 1.9E-8 score: 35.7
IPR036157	dUTPase-like superfamily	SUPERFAMILY	51283	dUTPase-like	coord: 33..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR11241:SF12	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE	coord: 5..72
IPR008181	Deoxyuridine triphosphate nucleotidohydrolase	PANTHER	PTHR11241	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE	coord: 5..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg033649.1	Spg033649.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006226	dUMP biosynthetic process
biological_process	GO:0046081	dUTP catabolic process
molecular_function	GO:0004170	dUTP diphosphatase activity
molecular_function	GO:0000287	magnesium ion binding