Spg033583 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg033583
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein L17
Locationscaffold5: 430328 .. 433650 (+)
RNA-Seq ExpressionSpg033583
SyntenySpg033583
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGACCCTGGAGATGAAACGGGCCAAGGGGTCGAGTCAAGGCCGAAGGGATTGGGCTTTTGGCCCTACCCCATGCTCGACCTCGGCCCGCTTGCGTGGGCCGAGTTCCTCCGACTCCGTTCGGTCCCTGCTGCCTCTAGTCGCCTCAGTTCCGCCTGGTTCGTCCCGAAATGCCTCTGAATTCCTAAAAACTCTAGGAGAATGAGCAGGTATTTAAACCCTTCTTCGTCACTGGAGATGGGATCCCGAATCCTACTCTCGACTCTCTTCTCTTGCTCTCTAGCTCTTCCATCTGTTTTCTGACTTAAGCATCGGAGGCGGTGTGACAAGCACCACACCAGTATGCAGGTTTTCTGTTGGCCACGTCGTCCCCCTATCAAATAAATTTACCGTTGGTGGTACGTGAAGGTCATGTGAGTTCCTTCCGACCAAATTTGACCATCAACAGTACATATTATTTTTTTTTATAATTAAATTATAAAAATATTTTTGGTTAAATTATTAAAAAATACTTATTAATTACGAGGTTATTTCCAATTATATTCAAATTTGATTTTTTTTTTAACTCTTGAAGTTTTTTTTTTTTTTACAATATGTAGGGTGGGAGATTCCAACCACATACCTTGTGGTAATAAGTACAAATTTGAATATTTGTTCACGTTAAATTTATGGATGAAAATGAATGTGTTGGAATATATATGGCTATTCCTTCAAAATACATGCATACATATGTATACGTATGTAAACATATTTAAACACATATGACATAACATAACACGTTATTTTTCGTAAAAAAGTTTTTAATGGTTATTTTAAAACCAACTTCAAACTTATTTTTTTTATAATTTAACCGATTATTATTATTATTTTCCGATTAGTATATGTAACTGCTCGCCCGTGCTCAAGCCCTAGAGACAACCTACCCTTATCTTGTTATCCACATACCACAGTCTGGGACAACCGTAAAATGGCAATGGCGATTACAACGGCAACGGCAACGGCAAACAGCCGATGGAGCCTAACAACATTGAGGTCAGCGCTACCTTCTATGGGAGTAGAAATTCATACTCCATCTCGCGTGAGCTTCCCGTCATCAAATGGTCGAATCAGTTGCAGAACCTGCAGCAAACCGATCGCTTCCTTTTCGGGTCTATGTCCTCTGAACCCTCTCATTTCCACTGGCTTATCAGGTAATTCCATTTCCTCTCATTCGTTACTTATGTAGCCCCATCTAATTTGATTTTTCATCTGCCAATTCATGCGTCTACTCTGCTTCTAGTGGCTGATTGGTTCATGTCCTATGAATTGAATAGTTCTGCAATAGTTTATTGTTATCGATTTCGATTTCTATTTGAATTGATACGTCCCCTTTATTCGGTAGTGTTTTGCTACAAATATTGTACCGAAGTCTCCTGCTAATTTTGGTAACGACGAGAAACTTGAGTTCATATTCGCGGAAAATGAAACGTTGATCACAGTTTGTTCGACACCCATTGAGTAACAATAGGAGAGAAAATGTGAAAATACTTAACTTTTTAATATAATTTTCTTCATGTAAGACTAACCGAGAGGGAGCCTTCCTTCTTTGTTGTGCCCTGCGAGCGAATATTTATTTCCATTTACCAATCGAACAATTGCCAAATACAGGATTAGATTGGCTGGTTTTACGTGGTCCATCATAGTTCAGAATTCTTTCAAAGGGGTTTGATTGGTGGGCACCTTAAGGATTGTCATAGGAATGACATTTAGTCTTTGGTTGATGTTTTAATCGTATTACTAGGCCTGAAATTATGAGAAATACGCCCATTGAAGTAGGTGGATTTTCAGGATTTATATCATTAAGTCCATTCTCCATCAACTTTCATTTTCTACTCCTACGCATTTAAAAGCACGACAAGTAAAATATTTTCTTCCGTCGCCTTGTAGGTTGTAGCTACCTACGGGTCCTACACAAAATTTCTTCCCTTTGCTCCTTTGCTTAGGTTTTCCTTGCCTCTTATGTATTCAGACATAAATTGGACACCTGTCTGTTGGGCACCATACTTTTATTCCCAACATTTTGCGCCCATATTACTGAGCAGTCAATATCACCTGCTTACTTAGTACTAGGTTGAGTATAAACTTAACATATTAGATTAAAGTCTTATGCACATGATGTAAATGCTCTCAAATACTGCTCTCGTGGGGATTATTATTACTTTCACATATCAATTGATCAACTAAGTTAACGTTTCAACATTAGTATTTGTAAGATAATATGAATTCCTAGATGCACTTGTTATACAAATACTCTGCATTTGAGTTTATGAATTCAAGCCTTAGTGGCTGAGGATTGTCAAAGTTTCTTGACGTTGAAGATCGTAGAGACTCAAGTAGTTACTTGTAAGATTAGATGATGATGTATGTCATAAGCTAGCCTAGACCCACAATTATAATTATAATAAAAGTAATATGTAGTCACTTGTTACATAAATCTCATCAAATTGAAGGAATTATTTTAAGATTATAAGCTAATAGCACATGGGTGATTCATACAAGTTTCTGGGAGCAAGACCTTCAAACAGTTCCTTTCCGTGTATTAACTGATGTAGAACCTGTGTTGCCTTGTCCATCATGCAGATTACAACAGCTTTGAACAAAACTTCACAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGCAAGCGCGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCATTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGATCAAGAGCAAGTGCTATACGTAAGTATGTTGACAAAATGATCACATTAGCGAAGGATGGTTCTTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTCCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATACACCAGAATTATAAGAACATTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGAATATTGGCCAGTCATGTTTGTATCAGTGAAGTCGATCAATTCTAGGAATGGTGATGAGGTTTAATCCTTTTTTGAGGCGTTGCCACATATATGATCATAAACCTTGTATTAATATCTGCATATATACATGCATGAAGCTCATAATTAGTTTGTCAAGTGCAATTCGGTATACATTATGGGGCTTGGTCAATTTGTTATTTGAATTCAAACTACATTTAGAAGATATTTGGTTGGCTGGAGGCTCACGATGACTGTGTATGTTCTAACCTGATTAAGATCGTCCTCTGTTAA

mRNA sequence

ATGATGGACCCTGGAGATGAAACGGGCCAAGGGGTCGAGTCAAGGCCGAAGGGATTGGGCTTTTGGCCCTACCCCATGCTCGACCTCGGCCCGCTTGCGTGGGCCGAGTTCCTCCGACTCCGTTCGGTCCCTGCTGCCTCTAGTCGCCTCAGTTCCGCCTGCATCGGAGGCGGTGTGACAAGCACCACACCAGTATGCAGCCCTAGAGACAACCTACCCTTATCTTGTTATCCACATACCACAGTCTGGGACAACCGTAAAATGGCAATGGCGATTACAACGGCAACGGCAACGGCAAACAGCCGATGGAGCCTAACAACATTGAGGTCAGCGCTACCTTCTATGGGAGTAGAAATTCATACTCCATCTCGCGTGAGCTTCCCGTCATCAAATGGTCGAATCAGTTGCAGAACCTGCAGCAAACCGATCGCTTCCTTTTCGGGTCTATGTCCTCTGAACCCTCTCATTTCCACTGGCTTATCAGATTACAACAGCTTTGAACAAAACTTCACAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGCAAGCGCGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCATTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGATCAAGAGCAAGTGCTATACGTAAGTATGTTGACAAAATGATCACATTAGCGAAGGATGGTTCTTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTCCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATACACCAGAATTATAAGAACATTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGA

Coding sequence (CDS)

ATGATGGACCCTGGAGATGAAACGGGCCAAGGGGTCGAGTCAAGGCCGAAGGGATTGGGCTTTTGGCCCTACCCCATGCTCGACCTCGGCCCGCTTGCGTGGGCCGAGTTCCTCCGACTCCGTTCGGTCCCTGCTGCCTCTAGTCGCCTCAGTTCCGCCTGCATCGGAGGCGGTGTGACAAGCACCACACCAGTATGCAGCCCTAGAGACAACCTACCCTTATCTTGTTATCCACATACCACAGTCTGGGACAACCGTAAAATGGCAATGGCGATTACAACGGCAACGGCAACGGCAAACAGCCGATGGAGCCTAACAACATTGAGGTCAGCGCTACCTTCTATGGGAGTAGAAATTCATACTCCATCTCGCGTGAGCTTCCCGTCATCAAATGGTCGAATCAGTTGCAGAACCTGCAGCAAACCGATCGCTTCCTTTTCGGGTCTATGTCCTCTGAACCCTCTCATTTCCACTGGCTTATCAGATTACAACAGCTTTGAACAAAACTTCACAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGCAAGCGCGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCATTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGATCAAGAGCAAGTGCTATACGTAAGTATGTTGACAAAATGATCACATTAGCGAAGGATGGTTCTTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTCCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATACACCAGAATTATAAGAACATTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGA

Protein sequence

MMDPGDETGQGVESRPKGLGFWPYPMLDLGPLAWAEFLRLRSVPAASSRLSSACIGGGVTSTTPVCSPRDNLPLSCYPHTTVWDNRKMAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFSGLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Homology
BLAST of Spg033583 vs. NCBI nr
Match: XP_022157331.1 (50S ribosomal protein L17, chloroplastic [Momordica charantia])

HSP 1 Score: 379.4 bits (973), Expect = 2.8e-101
Identity = 189/210 (90.00%), Postives = 201/210 (95.71%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           MAMA T  TA  NSRWSLT LR+ALPS+GVEIHTP+RVSFPS+ GR+SCRTCSKPIASFS
Sbjct: 1   MAMAFT--TAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLISTGLSD++SFE NFTIVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

BLAST of Spg033583 vs. NCBI nr
Match: XP_022971252.1 (50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ribosomal protein L17, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.4 bits (960), Expect = 9.1e-100
Identity = 188/210 (89.52%), Postives = 200/210 (95.24%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           MAMAITTATATANSRWS +++RSALPS+ V + TPSRVSFPSSNGR+S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLIS G SDYNSFEQNFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

BLAST of Spg033583 vs. NCBI nr
Match: XP_023540903.1 (50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371.7 bits (953), Expect = 5.9e-99
Identity = 187/210 (89.05%), Postives = 199/210 (94.76%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           MAMAITTATATANSRWS +++RSALPS+ V + TPSRVSFPSSNGR S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLIS G SDYNS+EQNFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSYEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

BLAST of Spg033583 vs. NCBI nr
Match: XP_038906261.1 (50S ribosomal protein L17, chloroplastic [Benincasa hispida])

HSP 1 Score: 371.3 bits (952), Expect = 7.7e-99
Identity = 191/210 (90.95%), Postives = 196/210 (93.33%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           MAMAIT  TATAN RWS TTLRSALPS+  EI TPSRVSFP SN R++ RTCSKPIASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVRSEICTPSRVSFPLSNVRVNSRTCSKPIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLISTGL DYN FE NF IVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLPDYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

BLAST of Spg033583 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 1.3e-98
Identity = 188/210 (89.52%), Postives = 196/210 (93.33%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           M+MAITTATATAN RWS TTLRSALPS+G EI T +RVSFP SN R+S RTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLISTG +DYN FE NF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

BLAST of Spg033583 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.9e-76
Identity = 150/214 (70.09%), Postives = 173/214 (80.84%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGR----ISCRTCSKPI 147
           M+MA+ T T + +  WS+++L+SALPS        + +  PSS+ R    +     S  +
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPS-------TASLRLPSSSSRRPVTLRLPISSPSL 64

Query: 148 ASFSGLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLR 207
            SFSGL P+NPL+S GL D+ SFE  F IVD G R +AMRHG+RVPKLNRPPDQR+ALLR
Sbjct: 65  PSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 124

Query: 208 GLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 267
           GLTTQLLKHGRIKTTR+RASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 125 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 184

Query: 268 VQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           V DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 185 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

BLAST of Spg033583 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.0e-74
Identity = 143/204 (70.10%), Postives = 168/204 (82.35%), Query Frame = 0

Query: 97  ATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISC---RTCSKPIASFSGLCPLN 156
           A+A++ WS++ L+SALPS+     +  R S   S  R+     ++ S+ + SF GL PL+
Sbjct: 2   ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSFVGLAPLH 61

Query: 157 PLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHG 216
           PL+S    D  SFE +FT++D+G R FAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHG
Sbjct: 62  PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121

Query: 217 RIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNG 276
           RIKTT++RA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNG
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNG 181

Query: 277 GYTRIIRTLPRRGDNAPMAYIELV 298
           GYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 182 GYTRIIRTLPRRGDNAPMAYIELV 205

BLAST of Spg033583 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 224.6 bits (571), Expect = 1.5e-57
Identity = 107/126 (84.92%), Postives = 122/126 (96.83%), Query Frame = 0

Query: 172 IVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDK 231
           ++D+G RFFAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTR++ASA+RKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 232 MITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM 291
           MITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 292 AYIELV 298
           AYIELV
Sbjct: 121 AYIELV 126

BLAST of Spg033583 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.4e-41
Identity = 79/116 (68.10%), Postives = 101/116 (87.07%), Query Frame = 0

Query: 182 MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSL 241
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT++RA A+R  VD+MITLAKDGSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 242 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
             RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

BLAST of Spg033583 vs. ExPASy Swiss-Prot
Match: B0C429 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplQ PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.9e-41
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 0

Query: 182 MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSL 241
           MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT++RA A+R  V+KMITLAKDGSL
Sbjct: 1   MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSL 60

Query: 242 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIEL 297
             RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT+ RRGDNA MA IEL
Sbjct: 61  ASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115

BLAST of Spg033583 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.4e-101
Identity = 189/210 (90.00%), Postives = 201/210 (95.71%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           MAMA T  TA  NSRWSLT LR+ALPS+GVEIHTP+RVSFPS+ GR+SCRTCSKPIASFS
Sbjct: 1   MAMAFT--TAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLISTGLSD++SFE NFTIVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

BLAST of Spg033583 vs. ExPASy TrEMBL
Match: A0A6J1I1G7 (50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470028 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 4.4e-100
Identity = 188/210 (89.52%), Postives = 200/210 (95.24%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           MAMAITTATATANSRWS +++RSALPS+ V + TPSRVSFPSSNGR+S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLIS G SDYNSFEQNFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

BLAST of Spg033583 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 6.4e-99
Identity = 188/210 (89.52%), Postives = 196/210 (93.33%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           M+MAITTATATAN RWS TTLRSALPS+G EI T +RVSFP SN R+S RTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLISTG +DYN FE NF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

BLAST of Spg033583 vs. ExPASy TrEMBL
Match: A0A6J1GDC0 (50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452972 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 6.4e-99
Identity = 187/210 (89.05%), Postives = 198/210 (94.29%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           MAMAITTATATANSRWS +++RSALP + V + TPSRVSFPSSNGR S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPFVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLIS G SDYNSFEQNFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

BLAST of Spg033583 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 1.0e-96
Identity = 187/210 (89.05%), Postives = 194/210 (92.38%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 147
           MAMAIT  TATAN RWS TTLRSALPS+G E  T +RVSFP SN R+S RTCSKPIASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 148 GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 207
           GLCPLNPLISTG +DYN FE NF IVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 208 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 267
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 268 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

BLAST of Spg033583 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-77
Identity = 150/214 (70.09%), Postives = 173/214 (80.84%), Query Frame = 0

Query: 88  MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGR----ISCRTCSKPI 147
           M+MA+ T T + +  WS+++L+SALPS        + +  PSS+ R    +     S  +
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPS-------TASLRLPSSSSRRPVTLRLPISSPSL 64

Query: 148 ASFSGLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLR 207
            SFSGL P+NPL+S GL D+ SFE  F IVD G R +AMRHG+RVPKLNRPPDQR+ALLR
Sbjct: 65  PSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 124

Query: 208 GLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 267
           GLTTQLLKHGRIKTTR+RASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 125 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 184

Query: 268 VQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           V DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 185 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

BLAST of Spg033583 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 108.6 bits (270), Expect = 8.7e-24
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0

Query: 190 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALG 249
           KL RP   R ++LR + +QL+KH RI+TT ++A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAG 65

Query: 250 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

BLAST of Spg033583 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-23
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 0

Query: 190 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALG 249
           KL RP   R ++LR + +QL++H RI+TT ++A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAG 65

Query: 250 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 298
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157331.12.8e-10190.0050S ribosomal protein L17, chloroplastic [Momordica charantia][more]
XP_022971252.19.1e-10089.5250S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ri... [more]
XP_023540903.15.9e-9989.0550S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_038906261.17.7e-9990.9550S ribosomal protein L17, chloroplastic [Benincasa hispida][more]
XP_004137669.11.3e-9889.5250S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti... [more]
Match NameE-valueIdentityDescription
Q9M3851.9e-7670.0950S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
O803634.0e-7470.1050S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P... [more]
P821941.5e-5784.9250S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P... [more]
B1XJI33.4e-4168.1050S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P... [more]
B0C4299.9e-4171.3050S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ... [more]
Match NameE-valueIdentityDescription
A0A6J1DXR71.4e-10190.0050S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1I1G74.4e-10089.5250S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A0A0L9N96.4e-9989.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1[more]
A0A6J1GDC06.4e-9989.0550S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A1S3B6521.0e-9689.0550S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G54210.11.4e-7770.09Ribosomal protein L17 family protein [more]
AT5G09770.18.7e-2448.15Ribosomal protein L17 family protein [more]
AT5G64650.14.3e-2347.22Ribosomal protein L17 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 188..297
e-value: 2.6E-42
score: 141.7
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 201..297
e-value: 4.1E-34
score: 117.4
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 134..297
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 186..297
score: 26.166737
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10Ribosomal protein L17coord: 172..297
e-value: 6.4E-50
score: 170.4
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 182..297
NoneNo IPR availablePANTHERPTHR14413:SF23SUBFAMILY NOT NAMEDcoord: 134..297

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg033583.1Spg033583.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome