Spg033296 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg033296
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptioncytochrome b-c1 complex subunit 9-like
Locationscaffold5: 4310863 .. 4312127 (+)
RNA-Seq ExpressionSpg033296
SyntenySpg033296
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGTCTTCTTCTCTCAACCAAAGGCGCGAGAAGTTTTTGCTAACCCTAAGGCATAGATCAGAAGGCAAAGAACTCGCGAGAACATCAACAATGAATTCAGCAGGTCGAAGAAGCGGAGGCCTTCTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGTAATGTTGTGGACCTCATCTTTATGCTAATTTATGTCTATTACATTTTTCTCTTTTCTTTTTGGTGGATTTTAGATTCGTTAATTTCGTTTCGGCTTTTGATCTGAGGATCTAGTTTTTGCAAATCACTGAATATTGATATTAAACTTCGTGGTTGACTGGTTGTATTATCGCTGATCCATGAAAAAATTTCAACGAAATAAGCTTATTCGTATCCGCTCGCGAGCAGAAGTAGGTGGAACCCTATTGAAATTTATGGTTTATCTGCATGAGGAGACTCGATTAAGAGTAGATTCATATATTGGTTTCTGGCATCAATTAAGAAGTCCGGTGAATATGATCGTATTGTCATCATTCAAAATAGGACTATGAATTTCATTCATGATTGTTTGCAGAATCTAAAGTTGTGTAAAGTTACTTAGTACGTCGTCTTCATGCATAGAAATGGAGTTTGGGGATTATTTGTATTTGGTCTGCTTACTGTAGTTAGACGACTTCCTTCCTTCTTTAAATTTAAACGATCATGAAAAGTGGAAGTGGCAATCAAATAAAAGGAACATAAGGATGTTTCTTTGTTTGGTCTATGGACTGTTATGTACTGGGCCTTGGTATATTGAATTGTAGTATGGGACTTATGAGTTGCATGGCATTTGCGTTGTTTTTAGGTTTATGGTATCTGACTTTTACCTTAATGCTTGGATTTTAATTGATGCAGGCTGTGGATTACGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTAAGAACCTAGCCCCATATATTGATTTACTTTGTTTTTCTACATACACATTTCAAATTTATTGTCGAGCTCTTGTTCCACATAGACGATGGTTTTGGCTTTTCTTGTGATCTAGAATGCTTGATGTTTTATCCTGGATGTTTTCATCTTCTATTGTCAGCTTCAAATTATCTATCAGTTTCAGTTTCTATTTGTGGATATTGTGTTTAATATTATGGCATTGTAGTTAGAACTTTTGCGTTTTCTTGATCTCCATTGGCCATTGATTTCCATTCTATCATCTAGTTCAAAGTGA

mRNA sequence

ATGAATTCAGCAGGTCGAAGAAGCGGAGGCCTTCTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGCTGTGGATTACGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGTTAGAACTTTTGCGTTTTCTTGATCTCCATTGGCCATTGATTTCCATTCTATCATCTAGTTCAAAGTGA

Coding sequence (CDS)

ATGAATTCAGCAGGTCGAAGAAGCGGAGGCCTTCTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGCTGTGGATTACGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGTTAGAACTTTTGCGTTTTCTTGATCTCCATTGGCCATTGATTTCCATTCTATCATCTAGTTCAAAGTGA

Protein sequence

MNSAGRRSGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGLELLRFLDLHWPLISILSSSSK
Homology
[Close]
BLAST of Spg033296 vs. NCBI nr
Match: KAG7028107.1 (hypothetical protein SDJN02_09287, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-21
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 1  MNSAGRRSGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGLELL 60
          MNSA  RSGGL EGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGL+++
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGLQII 59

[Close]
BLAST of Spg033296 vs. NCBI nr
Match: XP_023005921.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MNSAGRRSGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSA  RSGGL EGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Spg033296 vs. NCBI nr
Match: XP_038881019.1 (cytochrome b-c1 complex subunit 9-like isoform X2 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-20
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1  MNSAGRRS-GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGLELL 60
          M+SA RRS GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG  + 
Sbjct: 1  MDSAARRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGKRIQ 60

Query: 61 RFLDLHWP 68
             DL  P
Sbjct: 61 YKFDLTHP 68

[Close]
BLAST of Spg033296 vs. NCBI nr
Match: KAG6596568.1 (Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1   MNSAGRRSGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
           MNSA  RSGGL EGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 114 MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 168

[Close]
BLAST of Spg033296 vs. NCBI nr
Match: XP_022144609.1 (cytochrome b-c1 complex subunit 9-like [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-20
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MNSAGRRS-GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSAGRRS GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWE+NNVG
Sbjct: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEHNNVG 56

[Close]
BLAST of Spg033296 vs. ExPASy Swiss-Prot
Match: Q9LXJ2 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.9e-17
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 3  SAGRRSGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          +A R   G  EG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 4  AARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

[Close]
BLAST of Spg033296 vs. ExPASy Swiss-Prot
Match: P46270 (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-16
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 1  MNSAGRRS-GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          M SA RRS GG+LEG YR++MRR  VYVTF+IAGA +GERAVDYGV  LWE NNVG
Sbjct: 1  MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56

[Close]
BLAST of Spg033296 vs. ExPASy TrEMBL
Match: A0A6J1KWC9 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111498782 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MNSAGRRSGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSA  RSGGL EGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Spg033296 vs. ExPASy TrEMBL
Match: A0A6J1CST4 (cytochrome b-c1 complex subunit 9-like OS=Momordica charantia OX=3673 GN=LOC111014251 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MNSAGRRS-GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSAGRRS GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWE+NNVG
Sbjct: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEHNNVG 56

[Close]
BLAST of Spg033296 vs. ExPASy TrEMBL
Match: A0A6J1J703 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481802 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1  MNSAGRRS-GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSAGRRS GGL EGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]
BLAST of Spg033296 vs. ExPASy TrEMBL
Match: A0A6J1F714 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111441446 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1  MNSAGRRS-GGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSAGRRS GGL EGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]
BLAST of Spg033296 vs. ExPASy TrEMBL
Match: A0A6J1EKW3 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111434207 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MNSAGRRSGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSAG RS GL EGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Spg033296 vs. TAIR 10
Match: AT3G52730.1 (ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein )

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-18
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 3  SAGRRSGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          +A R   G  EG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 4  AARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

The following BLAST results are available for this feature:
BLAST of Spg033296 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028107.12.2e-2189.83hypothetical protein SDJN02_09287, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023005921.13.2e-2094.55cytochrome b-c1 complex subunit 9-like [Cucurbita maxima][more]
XP_038881019.13.2e-2082.35cytochrome b-c1 complex subunit 9-like isoform X2 [Benincasa hispida][more]
KAG6596568.13.2e-2094.55Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperm... [more]
XP_022144609.13.2e-2096.43cytochrome b-c1 complex subunit 9-like [Momordica charantia][more]
BLAST of Spg033296 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LXJ29.9e-1777.36Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
P462708.3e-1673.21Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1[more]
BLAST of Spg033296 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KWC91.5e-2094.55cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114987... [more]
A0A6J1CST41.5e-2096.43cytochrome b-c1 complex subunit 9-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1J7032.6e-2094.64cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114818... [more]
A0A6J1F7142.6e-2094.64cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A6J1EKW32.6e-2094.55cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
BLAST of Spg033296 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52730.17.0e-1877.36ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyGENE3D1.20.5.260coord: 9..57
e-value: 1.1E-21
score: 78.3
IPR036656Cytochrome b-c1 complex subunit 9 superfamilySUPERFAMILY81514Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 10..55
IPR008027Cytochrome b-c1 complex subunit 9PFAMPF05365UCR_UQCRX_QCR9coord: 14..55
e-value: 1.2E-17
score: 63.5
IPR008027Cytochrome b-c1 complex subunit 9PANTHERPTHR12980UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT Xcoord: 1..55
NoneNo IPR availablePANTHERPTHR12980:SF4CYTOCHROME B-C1 COMPLEX SUBUNIT 9-LIKEcoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg033296.1Spg033296.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III