![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Spg033147 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAATTTCGTGTTAGGGTTCCAAGTAAATTTCAGCCTTCACCATCTGGGCTCGGCCCAGAATGCGGCCAGAATTGGGCTTTGAAACTTTTATACGACCATTCGTCGCCGTTGCTGCTCCAGTCAAACCTCCGGCCGCCGTTCTTTCACCCGCTCTCTTGACTCGAACATGAACGCATAGCATCACCCTCATACTACTACCATGGCGGCGATCAGAAAAGCTATGGCACTAGCCTCCAATCGTCGTGTTCTTCCCTCTCTATTATCACCGCCGTCTCGCCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGTAAGCTCAACGTTCCTCCTCTCTATTCTACTCTTAGTTTTCCGATTCATCATATCTGCAGTTTACGTTTTAGCATCGAAATCACACTTTTTTGCCGCGATTTTTTTTTTTTTTTTTATGCTGATTAACTGTTCCTCTGTTTCCGTGAATTGAGCTAACTGTGTAGTCTGCGCGAGAGACTGTGAATTGTTTGAAGTAAGGTCTCTGTGATGTCCGCACGTTAAGTTTTGTGAAGTATGAACTTTGTTTTGATCTTAAAAGTGAAAGTATAACTGTATAAATGTGAGCTTCTGTACTAATTTACTTCAGGAAACCGAGATCGTGGAAAACTCTGGAGAAAAATTCTTGTATTGATATTCATTTCAAAATTGATATCCGTTCTATATATTATTAAGGATAGACATCTATTGGATATGTATGCTTCCACTTAATGTTGATGTCAAAGATCAAAAGGATGGATTGATATGAAAGGAATGTACAGAATTTTTTTAAATGTTTCATCCTTGATGTTAAGAATATGTCCATGTACTTATGGAGGGACAAAAAATAGCAGAGCTCGTACATCCAACGTCTCTCACCAAGGGAAAGACCAGGAAAATGAAAAACCAGACTGTAAAACCTGGACTTCTCTAGTAAGAGCTTCCTTAGCTAAATTATGTGTCTTGATGTCCATAAGCACCAAGCCAATTTTTTAGAGATCTTCCTCTTCATCATTCAACATGTTTCTTTTTGCCACTTCTGAGGATGGCTAAGTTCCTAAGCCCCAAGCCAGTAGCTAGAATGTAATGTAAACCTCCCAAATAGCTTCATTGTCCACCAAGAGTACGTGTCTTCTTTGTGAGTCTTGGCTTGCCCTTTGCCCCTAAAGAATCTGGTAGCAAAATGAAGGTTAGAGAAGTGGGTGTAAACAGTAAATAAGGGTGGCACTTCTAGGAAGAGAGTAAGATAATCAAGGAATTTTGCTTGCTCCATAAACTATGATAGTAAACTTCATTTGAAGTTGGGTAGATCTAAGAGGGATCTTAAGGATGTTGAGGGTTCTTGCAAGGAGGTGTAGGGTTTGGCCTGTTTTAATGATTCTCTTTATGTTTCTATGACTAAATTATCTGTAATCTTCATATTAGTTTTGATTTTTAATAATGGGAATCTTCTTTTGTAATGTCGGCTCTTCGGTTGGGCTTCCCTTTTTGTATGATTTTTGCTTTTGTTCTTTCATTTATCTGAATGAAAATTGGTTTCTTGTCGAGGAAAAAAAAAAGATAATGGTTGGCTTGTCGAAGAACCATGGTCCATATGCTTAGAAGTTTTCATTTTTTAGTCCTGAAATTGGAAGTTTCCTCACTAATGATACCTCTTTTTAGTTTGCTACAATTTCTTCATAAACCATCACAGCTTGTTTATCTTCTTCCATGAAACTGAACTCCCTAAATCTGTCTGCAATTGTATTGGAAGATCTACTTCGGTTGCCATTGCTCATTGTACTTGACCGCCAAAACCAGCAAGCACTGGAGGCTGAAGGAGCTAAAAATGTAGCATATCTCTTAAACTCTCATAAGAAGAAAACCTATAGAAACCTAGAATGAATAGGCAGCTTTAGGTTTATATATCTAGGATGTGTCAGGTTCTTTAAGATGCAAATAATCTGCAGTGGATGTCATTTATGGGTGATATACAACTAGAGACCAAGAATGTACTCGCAGTCGCAGCTTAGGTTTAACCTTGATTGTGGTAAACTGTTACTGTGTTCTTGTTCTGCTAGACTGCCACATCAACTTGTTCTTTAATGGGATTTGTGGATTTTGAGGAACTGACCCAATACTTATCCCTCCTTCATTGTTAACCTTTGTAAGTTTTTTTTCCCTTTCTGGAAGATTCTTACATGTCACATTGATTAATAGGAATGTTTATTGTTCTTATGAAAAAGAATAGAATCATTTGTCTAATAATGCTCTCGAGATTTTTGCTATTGATTATTTTATCAGTCTATACATATTACAACTCATTCCATATTGAAATCACTTTCTGGAATATTTTGCTACAGGACTCTCATTTTACACCACGGACAAAGGACTGTCAGAAGCCTTTTCTCAATATGGTCAAGTTGTCGAAGGTGACTCCCATTCAGATACTTTAGATTTCATGTCTAACCATGGAAATTTAGTTTCATGGAGCATAACACAATTTTCTCTACTCCAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGATGAAGCACATACAGCACTGACAGAGATGAACGGAAAGGTCTGCAGTCTGCACTTTCCTCTATCATTACTTTTACTGTTTTACATTTTAGAATTTAAGTCTAATGGTTATTTGTTGCAGCCTTTGAATGGAAGGGTTATTTTTGTGGACTATGCAAAACCGACATCCAATTTTCGTGGCGGAATTCCTATAGCAAGAGGACCTCCTGAGGAGAAAACTGATAAATGATTGCTCATAGAATTTTGCTTTGTCATTTATCAAAAATAAATTAGCTGAAAAGGGAGGGAATAACCCATGTAGCTGTGCGTGAAAAGTGTGATTCAGACGTGTTCTTTCAGCAATTTGCTTCATGCCAGAGATTTGAAAAGCTTCAGGAACTAGAGGTCAGCTTGCAGGAATCTTTAAAATTCGATGAAATTAGATTAACAGATTCTGTTTCTCTTCTCAAAAAAAAGATTAACAGATTGATTTTTTTAAAAAAATATTTAAGTTTGCTTCTTATTAGTTAAGTATCTTATTAACTATAGTTAAACTGAAATTCAGACGTTTTTTTATGTATTTCCTTAGTTCTCAGATTGATGATATATTGTGATAGTAATCTTTCTTTTCACAACCATTAATCTCATGTCTAAAAATAGGTTTTATTCTCATTTTGATTTTCAGATTTATTCTATTGAGTCCCTT ATGGCGGCGATCAGAAAAGCTATGGCACTAGCCTCCAATCGTCGTGTTCTTCCCTCTCTATTATCACCGCCGTCTCGCCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTCTCATTTTACACCACGGACAAAGGACTGTCAGAAGCCTTTTCTCAATATGGTCAAGTTGTCGAAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGATGAAGCACATACAGCACTGACAGAGATGAACGGAAAGCCTTTGAATGGAAGGGTTATTTTTGTGGACTATGCAAAACCGACATCCAATTTTCGTGGCGGAATTCCTATAGCAAGAGGACCTCCTGAGGAGAAAACTGATAAATGA ATGGCGGCGATCAGAAAAGCTATGGCACTAGCCTCCAATCGTCGTGTTCTTCCCTCTCTATTATCACCGCCGTCTCGCCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTCTCATTTTACACCACGGACAAAGGACTGTCAGAAGCCTTTTCTCAATATGGTCAAGTTGTCGAAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGATGAAGCACATACAGCACTGACAGAGATGAACGGAAAGCCTTTGAATGGAAGGGTTATTTTTGTGGACTATGCAAAACCGACATCCAATTTTCGTGGCGGAATTCCTATAGCAAGAGGACCTCCTGAGGAGAAAACTGATAAATGA MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGGIPIARGPPEEKTDK Homology
BLAST of Spg033147 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 248.1 bits (632), Expect = 4.4e-62 Identity = 124/134 (92.54%), Postives = 131/134 (97.76%), Query Frame = 0
BLAST of Spg033147 vs. NCBI nr
Match: XP_038903502.1 (small RNA-binding protein 11, chloroplastic [Benincasa hispida]) HSP 1 Score: 243.8 bits (621), Expect = 8.4e-61 Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 0
BLAST of Spg033147 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60 Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0
BLAST of Spg033147 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60 Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0
BLAST of Spg033147 vs. NCBI nr
Match: KAG7028125.1 (Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60 Identity = 121/134 (90.30%), Postives = 130/134 (97.01%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 2.4e-34 Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 4.4e-20 Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19 Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 3.1e-18 Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 5.3e-18 Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy TrEMBL
Match: A0A6J1KYF3 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498283 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62 Identity = 124/134 (92.54%), Postives = 131/134 (97.76%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy TrEMBL
Match: A0A6J1F5P0 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441037 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.9e-61 Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy TrEMBL
Match: A0A5A7TKK4 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004160 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58 Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy TrEMBL
Match: A0A0A0LE31 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58 Identity = 117/134 (87.31%), Postives = 126/134 (94.03%), Query Frame = 0
BLAST of Spg033147 vs. ExPASy TrEMBL
Match: A0A1S3B7I3 (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58 Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0
BLAST of Spg033147 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 146.4 bits (368), Expect = 1.7e-35 Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 0
BLAST of Spg033147 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 99.0 bits (245), Expect = 3.1e-21 Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0
BLAST of Spg033147 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 99.0 bits (245), Expect = 3.1e-21 Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0
BLAST of Spg033147 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19 Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 0
BLAST of Spg033147 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 ) HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19 Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|