Spg033116 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg033116
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransducin family protein / WD-40 repeat family protein, putative isoform 3
Locationscaffold5: 992255 .. 995011 (+)
RNA-Seq ExpressionSpg033116
SyntenySpg033116
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATATGTGTGCATCCGAAATTATCAAAATTTATTCTTAGAAAAAAAAAAGAAAAAAGAAAATACATCAAGAAGGAAAGAAAGGGAATAAATAGTATTAACAGGTGGCGTTCCGCGCGAAAAAATTAAACATATAAACAAGAAGAAGAGTACCGCAGACAATATTTGCGAAGAGAGAGCGCAAGTGGAATGGCCATTGACTTGAAATTCGGGAGTGAAAACCGATGAATTCACTTCTTCAGCTGTCATCGGAATGATCATCGATCAGATACTCGCAAGGAAGAAATCGCCGGAGTTAGGTTGATTGATCATGTTTGCCAAGCGATTGTTGCAGAAGGCCATTCATCATTCTCAGGTATCGTCTTCTACCTGATTCTACTTCGATTAGAATTTCCGTATTCGAATTCGTCAACAATGCAGATGATCTAGGGTTTCAATTTCTTTGCTCAAAATTGATTAAGTCCGTAACCTGTTGAGGCGACGAATCTTCTTAATCTCAATCATAATCTTAGTGTATGTTTCAACGTATCGTCTATCTCACAAGCAGGAATTGAACAAGATATATTCCATTTGATCATGAAATCTGCAGTCTGTAGAGGCGACGATATATCGTTATTTAGGGAACTAACCTTAGCTTATATTTTCAACGTCTTGGTTAAGTCACGAGCGAGGAATGGAAGACATATTCGTTTCAGCTTTGCAAAAATTATAGGTATTACTGGTCGATTCAGAAACACGCGATTTCTCTGGCGTCTCATTTCTTACGTTGTGGCATCTTTTCGCGTGCAATGCTATTAGCTATTTTACGTTTCATTACTGAGCCGTCGTCCATGTTTAACTTATCAGAAACAACATGACCACTTGTTTTCATATTTTCTCCATTCAGCATGCTGTGCAGCGCGGTAGTTTAACTCCGGAAGATTTGGATCTCAGAGTCACGGTTCACTATGGCATCCCATCAACCGCATCAATTCTTGCTTTCGACTCCATCCAGCTGCTACTGGCCATTGGAACACTGTGAGTTGGTCCTCTCTGTTAGTTGTTAATTTTGATGAATCTGAAAGTAGTGTTGAAGCGAGTAGCTTGTCACCTGCATCTGAACTATGATTAGTGTGTTCTCCTGCTATTTGAGGTTTTTTTTACCTTTATTTTCCTGTTTGATTTGGTTACCTCACGCACTAGTGTATGTGTAAAAGAATTGGCCAATAAGTTGTTTTTGGCCTATCTAATACATTATGCAAGATAATCGTGATGTCATCCTGTGGAATTTATGGCAAGTTGAACGAGTGAGGGTTGGACTTTGATATGTGAATTAGTAGAAATCTAGGACAGGAAAAGTAAAGACATCATTTCAGCTAAAAGATGAACGTTTCATGCCAGGGATGGAAGAATAAAAGTGATTGGTGGAGGTGGTATTGAAGGGCTTCTTATATCCCCAAACCAATTGCCTTACAAGTACTTAGAGGTAAAATTTCTGCAGTTTTTAAAATTGAGTTATAAACTCACATCTTTCACATTTTAGTAGCAATGAACCTGATCGTGCATTTCTTCCTACAGTTTCTACAGAATGTAGGTTATTTAATTAGCATCTCCAATGACAACGAAATTCAGGTATTAAATCTTCGCTAACCAAGTAGTTTTGTTCCTGATAATCATGATTCACAATGAGATACCAGCCTTCATATCAATATCATGAATCAAATTAATAGCAGTTTTAAACCTCACTGTGCTGTTTACTCCTGCATTGGATTCTTAAGTTTATATATTTGATCATCAATAACGTTGGTAAGACAGTGGGTAAATGTTGGTTTTCGTTTTTATTTCTAATTCTGGCTATCTATAGCAGTGCTATGAAATACTATGAGTGAACTACTCTCTGCAGTCTTATCTTGAAAGTAGTTGGTTGGAATTTGCAAGCGTCCAAAAATTTTATTCCTCAGTAAAGGGATTCTTTAGGTTACTTATTTTTGGTGGCAAGACACTTCTGTACATGATTAGGTGGATGCATGTTTGTTTATGTAGGAAAATGTTTGTTTCTTTTCCATGGCAGGTCTGGAATCTTGACAGTAGGTCTATAGCATGCTGTTTACAGTGGAAATCAAATATAACTGCGTTTTCCATCGTTGGTGGCTCCCACTTCATGTATAACAACCACCTTTGCATCATCTCGTTCAGCTTTCTATTGGCCAATAACTAGATATTGATCCGTTTAGCCATTACTATTTCAAAAAAGAAAAAGGAAAATAAGCAATTATTCCATAACATGCAGGTATGTCGGGGATGAGTATGGTTTATTGTCAGTTATCAAGTTTGATGCTGAAGATGAAAAACTTCTGCAGTTGCCATACCTTATTTCTGCAACTAATATCAATGGTAATATCTGCTGTTTCATTCAGTTGGAGACATTATTGTCTAGTTCATTGAATTGCATGATGTATAATTCTGCTTCTGGTTCGTTAATGAGATGTCCTGCTTGATGTATTTAATCCCAGTAGGGTTCCACATTGCAGGGGTGATTTAAAAAAAATGAAGAAAAGAAAAAATAATGGGGGACAGTTGAATGAGCAAAGTGTGATAACTCAGATGCTCAGTGCATTTTACTTTCTTTCTTGTGTATTACCATACACAGTTTTTCAACTTTTTTTTGCCTGTAGATGTTGCAGGATTTCCATTCCCCGATGATCAGCCCTCGCCTGTCATTGGAGTTCTTCAGCATTCTTCTTCTATTGAGAATAGGCAAGATACTTGCATGGAATGA

mRNA sequence

ATGTATGTCGGGGATGAGTATGGTTTATTGTCAGTTATCAAGTTTGATGCTGAAGATGAAAAACTTCTGCAGTTGCCATACCTTATTTCTGCAACTAATATCAATGGTAATATCTGCTGTTTCATTCAGTTGGAGACATTATTGTCTAGTTCATTGAATTGCATGATGTATAATTCTGCTTCTGATGTTGCAGGATTTCCATTCCCCGATGATCAGCCCTCGCCTGTCATTGGAGTTCTTCAGCATTCTTCTTCTATTGAGAATAGGCAAGATACTTGCATGGAATGA

Coding sequence (CDS)

ATGTATGTCGGGGATGAGTATGGTTTATTGTCAGTTATCAAGTTTGATGCTGAAGATGAAAAACTTCTGCAGTTGCCATACCTTATTTCTGCAACTAATATCAATGGTAATATCTGCTGTTTCATTCAGTTGGAGACATTATTGTCTAGTTCATTGAATTGCATGATGTATAATTCTGCTTCTGATGTTGCAGGATTTCCATTCCCCGATGATCAGCCCTCGCCTGTCATTGGAGTTCTTCAGCATTCTTCTTCTATTGAGAATAGGCAAGATACTTGCATGGAATGA

Protein sequence

MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSASDVAGFPFPDDQPSPVIGVLQHSSSIENRQDTCME
Homology
[Close]
BLAST of Spg033116 vs. NCBI nr
Match: TYK24953.1 (avirulence-responsive protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 6.2e-18
Identity = 56/95 (58.95%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MYVGDE GL+SV+KFD EDEKL+ LPY ISA +I                          
Sbjct: 282 MYVGDENGLMSVVKFDPEDEKLMLLPYRISAASI-------------------------- 341

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSSSIENRQDTCME 96
           SDVAGFPFPDDQPSP+IGVLQH SSI NRQDTC E
Sbjct: 342 SDVAGFPFPDDQPSPIIGVLQH-SSIGNRQDTCTE 349

[Close]
BLAST of Spg033116 vs. NCBI nr
Match: XP_022145606.1 (uncharacterized protein LOC111015012 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 53/86 (61.63%), Postives = 56/86 (65.12%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MY+GDEYGL+SVIKFDAEDEKLL LPY ISAT+I                          
Sbjct: 136 MYIGDEYGLMSVIKFDAEDEKLLHLPYHISATSI-------------------------- 195

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSSSI 87
           SDVAGFPFPDDQ SPVIGVL HSSSI
Sbjct: 196 SDVAGFPFPDDQLSPVIGVLHHSSSI 195

[Close]
BLAST of Spg033116 vs. NCBI nr
Match: XP_022934516.1 (uncharacterized protein LOC111441669 isoform X3 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 9.9e-16
Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MYVGDE GLLSVIKFDAEDEKLLQLPYL+SAT+I                          
Sbjct: 136 MYVGDENGLLSVIKFDAEDEKLLQLPYLVSATSI-------------------------- 193

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSS 85
           SDVAGFPFPD Q SPVIGVLQHSS
Sbjct: 196 SDVAGFPFPDVQTSPVIGVLQHSS 193

[Close]
BLAST of Spg033116 vs. NCBI nr
Match: XP_022934514.1 (uncharacterized protein LOC111441669 isoform X1 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 9.9e-16
Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MYVGDE GLLSVIKFDAEDEKLLQLPYL+SAT+I                          
Sbjct: 136 MYVGDENGLLSVIKFDAEDEKLLQLPYLVSATSI-------------------------- 193

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSS 85
           SDVAGFPFPD Q SPVIGVLQHSS
Sbjct: 196 SDVAGFPFPDVQTSPVIGVLQHSS 193

[Close]
BLAST of Spg033116 vs. NCBI nr
Match: XP_022934515.1 (uncharacterized protein LOC111441669 isoform X2 [Cucurbita moschata] >KAG7017217.1 Syntaxin-binding protein 5-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 9.9e-16
Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MYVGDE GLLSVIKFDAEDEKLLQLPYL+SAT+I                          
Sbjct: 136 MYVGDENGLLSVIKFDAEDEKLLQLPYLVSATSI-------------------------- 193

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSS 85
           SDVAGFPFPD Q SPVIGVLQHSS
Sbjct: 196 SDVAGFPFPDVQTSPVIGVLQHSS 193

[Close]
BLAST of Spg033116 vs. ExPASy TrEMBL
Match: A0A0A0LA66 (V-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G731100 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MYVGDE GLLSV+KFD EDEKL+ LPY ISAT+I GN+CCFIQL+TL+    +    N  
Sbjct: 136 MYVGDENGLLSVVKFDPEDEKLMLLPYRISATSIGGNVCCFIQLDTLVLYENSGEQLNE- 195

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSS 85
            +VAGF FPDDQPSP+IGVLQHSS
Sbjct: 196 QNVAGFSFPDDQPSPIIGVLQHSS 218

[Close]
BLAST of Spg033116 vs. ExPASy TrEMBL
Match: A0A5D3DMU2 (Avirulence-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00690 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 56/95 (58.95%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MYVGDE GL+SV+KFD EDEKL+ LPY ISA +I                          
Sbjct: 282 MYVGDENGLMSVVKFDPEDEKLMLLPYRISAASI-------------------------- 341

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSSSIENRQDTCME 96
           SDVAGFPFPDDQPSP+IGVLQH SSI NRQDTC E
Sbjct: 342 SDVAGFPFPDDQPSPIIGVLQH-SSIGNRQDTCTE 349

[Close]
BLAST of Spg033116 vs. ExPASy TrEMBL
Match: A0A6J1CWT3 (uncharacterized protein LOC111015012 OS=Momordica charantia OX=3673 GN=LOC111015012 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 53/86 (61.63%), Postives = 56/86 (65.12%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MY+GDEYGL+SVIKFDAEDEKLL LPY ISAT+I                          
Sbjct: 136 MYIGDEYGLMSVIKFDAEDEKLLHLPYHISATSI-------------------------- 195

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSSSI 87
           SDVAGFPFPDDQ SPVIGVL HSSSI
Sbjct: 196 SDVAGFPFPDDQLSPVIGVLHHSSSI 195

[Close]
BLAST of Spg033116 vs. ExPASy TrEMBL
Match: A0A6J1F2T9 (uncharacterized protein LOC111441669 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441669 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.8e-16
Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MYVGDE GLLSVIKFDAEDEKLLQLPYL+SAT+I                          
Sbjct: 136 MYVGDENGLLSVIKFDAEDEKLLQLPYLVSATSI-------------------------- 193

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSS 85
           SDVAGFPFPD Q SPVIGVLQHSS
Sbjct: 196 SDVAGFPFPDVQTSPVIGVLQHSS 193

[Close]
BLAST of Spg033116 vs. ExPASy TrEMBL
Match: A0A6J1F7X5 (uncharacterized protein LOC111441669 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441669 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.8e-16
Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLISATNINGNICCFIQLETLLSSSLNCMMYNSA 60
           MYVGDE GLLSVIKFDAEDEKLLQLPYL+SAT+I                          
Sbjct: 136 MYVGDENGLLSVIKFDAEDEKLLQLPYLVSATSI-------------------------- 193

Query: 61  SDVAGFPFPDDQPSPVIGVLQHSS 85
           SDVAGFPFPD Q SPVIGVLQHSS
Sbjct: 196 SDVAGFPFPDVQTSPVIGVLQHSS 193

[Close]
BLAST of Spg033116 vs. TAIR 10
Match: AT5G05570.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLI 30
           MYVGDEYG++SV+ + A++ KLLQLPY +
Sbjct: 141 MYVGDEYGMVSVLNYSADEGKLLQLPYYV 169

[Close]
BLAST of Spg033116 vs. TAIR 10
Match: AT5G05570.2 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 1   MYVGDEYGLLSVIKFDAEDEKLLQLPYLI 30
           MYVGDEYG++SV+ + A++ KLLQLPY +
Sbjct: 141 MYVGDEYGMVSVLNYSADEGKLLQLPYYV 169

The following BLAST results are available for this feature:
BLAST of Spg033116 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK24953.16.2e-1858.95avirulence-responsive protein [Cucumis melo var. makuwa][more]
XP_022145606.12.6e-1661.63uncharacterized protein LOC111015012 [Momordica charantia][more]
XP_022934516.19.9e-1663.10uncharacterized protein LOC111441669 isoform X3 [Cucurbita moschata][more]
XP_022934514.19.9e-1663.10uncharacterized protein LOC111441669 isoform X1 [Cucurbita moschata][more]
XP_022934515.19.9e-1663.10uncharacterized protein LOC111441669 isoform X2 [Cucurbita moschata] >KAG7017217... [more]
BLAST of Spg033116 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg033116 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA665.3e-2369.05V-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=365... [more]
A0A5D3DMU23.0e-1858.95Avirulence-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A6J1CWT31.3e-1661.63uncharacterized protein LOC111015012 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1F2T94.8e-1663.10uncharacterized protein LOC111441669 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1F7X54.8e-1663.10uncharacterized protein LOC111441669 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Spg033116 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G05570.12.2e-0562.07transducin family protein / WD-40 repeat family protein [more]
AT5G05570.22.2e-0562.07transducin family protein / WD-40 repeat family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg033116.1Spg033116.1mRNA