Spg033018 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg033018
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-H2 finger protein ATL70-like
Location	scaffold5: 5649087 .. 5649587 (+)
RNA-Seq Expression	Spg033018
Synteny	Spg033018

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACTCCACAGACTCCGGCGGATCGATGTCCTCCGGCGGCGCCGGCAGTTTCCCTTATGTCATCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTGACAATCGCCACCTATTTCTGCACCAGAACCACCGTCCCGGCGCCGATTCGCCGTCGTCGGCTGGAGGAACGGCGGGATTTCGTCGTCGATTTCGGACCAGGGCTGGAAGATGAGGCCATTAATGGATATCCGAAGATTCTGTACTCCGAGGCGAAGTTGGACGGGAAATTGGAGTCCGCCGCCGCGAGCGGCTGCTCGATTTGTTTGGGGGATTATAAAAACGGCGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACATCGGTTGTATCGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGCAGAACGTCGCCGTTGCCGACGCCGATTTCGACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

mRNA sequence

ATGAACAACTCCACAGACTCCGGCGGATCGATGTCCTCCGGCGGCGCCGGCAGTTTCCCTTATGTCATCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTGACAATCGCCACCTATTTCTGCACCAGAACCACCGTCCCGGCGCCGATTCGCCGTCGTCGGCTGGAGGAACGGCGGGATTTCGTCGTCGATTTCGGACCAGGGCTGGAAGATGAGGCCATTAATGGATATCCGAAGATTCTGTACTCCGAGGCGAAGTTGGACGGGAAATTGGAGTCCGCCGCCGCGAGCGGCTGCTCGATTTGTTTGGGGGATTATAAAAACGGCGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACATCGGTTGTATCGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGCAGAACGTCGCCGTTGCCGACGCCGATTTCGACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

Coding sequence (CDS)

ATGAACAACTCCACAGACTCCGGCGGATCGATGTCCTCCGGCGGCGCCGGCAGTTTCCCTTATGTCATCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTGACAATCGCCACCTATTTCTGCACCAGAACCACCGTCCCGGCGCCGATTCGCCGTCGTCGGCTGGAGGAACGGCGGGATTTCGTCGTCGATTTCGGACCAGGGCTGGAAGATGAGGCCATTAATGGATATCCGAAGATTCTGTACTCCGAGGCGAAGTTGGACGGGAAATTGGAGTCCGCCGCCGCGAGCGGCTGCTCGATTTGTTTGGGGGATTATAAAAACGGCGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACATCGGTTGTATCGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGCAGAACGTCGCCGTTGCCGACGCCGATTTCGACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

Protein sequence

MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERRDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDCGHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS

Homology

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BLAST of Spg033018 vs. NCBI nr
Match: XP_023528902.1 (RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.8 bits (743), Expect = 7.4e-75
Identity = 139/166 (83.73%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MNNST SGGS +SG  G+FPY++GISVG+LFLLTT+TIATY CTRTTVP P RRRR  ER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RD +VDFGPGLEDEAIN YPKILYSE KL+GK+ESAAASGCSICLGDYKN DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 167
           GH+FH GCIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Spg033018 vs. NCBI nr
Match: XP_022935317.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 139/166 (83.73%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MNNST SGGS ++G  G+FPY++GISVG+LFLLTT+TIATY CTRTTVP P RRRR  ER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RD +VDFGPGLEDEAIN YPKILYSE KL+GKLESAAASGCSICLGDYKN DVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 167
           GH+FH GCIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Spg033018 vs. NCBI nr
Match: KAG6580759.1 (putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017512.1 putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.9 bits (738), Expect = 2.8e-74
Identity = 138/165 (83.64%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MNNST SGGS ++G  G+FPY++GISVG+LFLLTT+TIATY CTRTTVP P RRRR  ER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RD +VDFGPGLEDEAIN YPKILYSE KL+GKLESAAASGCSICLGDYKN DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGR 166
           GH+FH GCIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

[Close]

BLAST of Spg033018 vs. NCBI nr
Match: XP_022983126.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 138/166 (83.13%), Postives = 150/166 (90.36%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MNNST SGGS +SG  G+FPY++GISVG+LFLLTT+TIATY CTRTTVP   RRRR  ER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RD +VDFGPGLEDEAIN YPKILYSE KL+GK+ESAAASGCSICLGDYKN DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 167
           GH+FH GCIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Spg033018 vs. NCBI nr
Match: KAA0043799.1 (RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-68
Identity = 135/166 (81.33%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MN+ +DSGG    G  GSFP+++GISVGILFLLTTLTI TY CTRTTVP P RR + E R
Sbjct: 1   MNSPSDSGG----GDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGR 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RDFVVDF  GLEDE INGYPKILYSEAKL+ KLESAAA+GCSICL DYK+ DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 167
           GHLFH  CIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS
Sbjct: 121 GHLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of Spg033018 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-42
Identity = 86/163 (52.76%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 6   DSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERR---- 65
           D  G + +   G F Y IG+S+G+L L+TT+T+ +Y+CTR  + +   +   +  R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHH 110

Query: 66  --DFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPD 125
               ++D  PGL+++ I  YPKILYSEAK         AS C+ICLGDYK   +LR LPD
Sbjct: 111 HHHVIIDVVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPD 170

Query: 126 CGHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLA 163
           C HLFH+ CID WLRLNP+CPVCRTSPLPTP+STPLAEVVPLA
Sbjct: 171 CNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of Spg033018 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.9e-39
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 0


Query: 17  GSFPYVIGISVGILFLLTTLTIATYFCTR-------TTVPAPIRRRRL--------EERR 76
           G   Y IG+S+GIL L+TT+T+ +Y+CTR       TT P   RR+R         +ER 
Sbjct: 21  GGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERF 80

Query: 77  DFVVDFGP-------GLEDEAINGYPKILYSEAKLDGKL--ESAAASGCSICLGDYKNGD 136
           DF  D          GL +E I G+PK+ Y EA++   L  ES+  S CSICL DYK  D
Sbjct: 81  DFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMD 140

Query: 137 VLRLLPDCGHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLA 163
           ++R+LPDC HLFH  C+DPWLRL+P+CPVCRTSPLP+P  TP+A+VVP +
Sbjct: 141 MIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Spg033018 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 65/169 (38.46%), Postives = 91/169 (53.85%), Query Frame = 0


Query: 19  FPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERRDFVV------------- 78
           F Y I I++G L LL+T+ +++Y C R +           +R   V+             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 79  -----DFGPGLEDEAINGYPKILYSEAKLDGKLESAAASG---CSICLGDYKNGDVLRLL 138
                D   GL+   IN YPK  +S+       +     G   CSICL +YK  ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 139 PDCGHLFHIGCIDPWLRLNPSCPVCRTSPLP----TPISTPLAEVVPLA 163
           P+C H FH+ C+D WL+LN SCPVCR SPLP    TP+STPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Spg033018 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 21  YVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERRDFVVDFGP-------GLED 80
           Y I I+V IL L++ + +A+Y C R+         R E   D V+D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRSKSTG-----RDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 81  EAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDCGHLFHIGCIDPWL 140
             I  YP+I+  +++   +L       CSICL DY+  + +R +P+C H FH  C+D WL
Sbjct: 75  PVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 141 RLNPSCPVCRTSPLPTPISTPLAEVVPLA 163
           R + +CP+CR SP P+ ++TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Spg033018 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-21
Identity = 64/175 (36.57%), Postives = 92/175 (52.57%), Query Frame = 0


Query: 21  YVIGISVGILFLLTTLTIATYFCTRTT-----------------------VPAPIRRRRL 80
           Y I I++G L L++T+ +++Y C R +                       VP  I     
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 81  EERRDFVVDFGPGLEDEAINGYPKILYSE-----AKLDGKLE-SAAASGCSICLGDYKNG 140
           ++     V  G GL+   IN YPK  +++        DG  +     + CSICL +Y   
Sbjct: 88  DDLESGNVVVG-GLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEE 147

Query: 141 DVLRLLPDCGHLFHIGCIDPWLRLNPSCPVCRTSPLP----TPISTPLAEVVPLA 163
           ++LR++P+C H FH+ C+D WL+LN SCPVCR SPLP    TP STPL+EVVPL+
Sbjct: 148 EMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of Spg033018 vs. ExPASy TrEMBL
Match: A0A6J1F576 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.1e-75
Identity = 139/166 (83.73%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MNNST SGGS ++G  G+FPY++GISVG+LFLLTT+TIATY CTRTTVP P RRRR  ER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RD +VDFGPGLEDEAIN YPKILYSE KL+GKLESAAASGCSICLGDYKN DVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 167
           GH+FH GCIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Spg033018 vs. ExPASy TrEMBL
Match: A0A6J1J186 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.2e-74
Identity = 138/166 (83.13%), Postives = 150/166 (90.36%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MNNST SGGS +SG  G+FPY++GISVG+LFLLTT+TIATY CTRTTVP   RRRR  ER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RD +VDFGPGLEDEAIN YPKILYSE KL+GK+ESAAASGCSICLGDYKN DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 167
           GH+FH GCIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Spg033018 vs. ExPASy TrEMBL
Match: A0A5A7TRH5 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004730 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.5e-69
Identity = 135/166 (81.33%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MN+ +DSGG    G  GSFP+++GISVGILFLLTTLTI TY CTRTTVP P RR + E R
Sbjct: 1   MNSPSDSGG----GDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGR 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RDFVVDF  GLEDE INGYPKILYSEAKL+ KLESAAA+GCSICL DYK+ DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 167
           GHLFH  CIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS
Sbjct: 121 GHLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of Spg033018 vs. ExPASy TrEMBL
Match: A0A0A0LEU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.2e-68
Identity = 132/166 (79.52%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEER 60
           MN+S DSGG    G  G FPY++GISVGILFLLTTLTI TY CTRTTVP P RR     R
Sbjct: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60

Query: 61  RDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDC 120
           RDFVVDF  GLEDE INGYPKILYSEAKL+ KLESAA +GCSICL DYK+ DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 167
           GHLFH GCIDPWLRLNPSCPVCRTSP+PTPISTPLAEV+PLA+GRS
Sbjct: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRS 162

[Close]

BLAST of Spg033018 vs. ExPASy TrEMBL
Match: A0A498I2L1 (RING-type domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_019302 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.0e-50
Identity = 109/172 (63.37%), Postives = 127/172 (73.84%), Query Frame = 0


Query: 1   MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRT-TVPAPIRRRRLEE 60
           MN ++DSGG + S   GSF Y IG+SVGIL L+TT+T+A+YFC RT   PAP  RR   +
Sbjct: 1   MNATSDSGGFLGSNNIGSFGYGIGVSVGILLLITTITLASYFCARTQQPPAPPTRRNTRD 60

Query: 61  RRD------FVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDV 120
             D      FVVD   GL+D  I  YPK+LYSEAKL  K  ++ AS CSICL DYKN D+
Sbjct: 61  AMDPPGLENFVVDI--GLDDNTIQSYPKMLYSEAKLQKK--NSTASCCSICLADYKNSDM 120

Query: 121 LRLLPDCGHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGR 166
           LRLLPDC HLFH+ CIDPWLRLNP+CPVCRTSP+PTP+STPLAEVVPLA  R
Sbjct: 121 LRLLPDCRHLFHLKCIDPWLRLNPTCPVCRTSPIPTPLSTPLAEVVPLASRR 168

[Close]

BLAST of Spg033018 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.2e-44
Identity = 86/163 (52.76%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 6   DSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERR---- 65
           D  G + +   G F Y IG+S+G+L L+TT+T+ +Y+CTR  + +   +   +  R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHH 110

Query: 66  --DFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPD 125
               ++D  PGL+++ I  YPKILYSEAK         AS C+ICLGDYK   +LR LPD
Sbjct: 111 HHHVIIDVVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPD 170

Query: 126 CGHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLA 163
           C HLFH+ CID WLRLNP+CPVCRTSPLPTP+STPLAEVVPLA
Sbjct: 171 CNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of Spg033018 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 6.3e-40
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 0


Query: 17  GSFPYVIGISVGILFLLTTLTIATYFCTR-------TTVPAPIRRRRL--------EERR 76
           G   Y IG+S+GIL L+TT+T+ +Y+CTR       TT P   RR+R         +ER 
Sbjct: 21  GGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERF 80

Query: 77  DFVVDFGP-------GLEDEAINGYPKILYSEAKLDGKL--ESAAASGCSICLGDYKNGD 136
           DF  D          GL +E I G+PK+ Y EA++   L  ES+  S CSICL DYK  D
Sbjct: 81  DFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMD 140

Query: 137 VLRLLPDCGHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLA 163
           ++R+LPDC HLFH  C+DPWLRL+P+CPVCRTSPLP+P  TP+A+VVP +
Sbjct: 141 MIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Spg033018 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-26
Identity = 65/169 (38.46%), Postives = 91/169 (53.85%), Query Frame = 0


Query: 19  FPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERRDFVV------------- 78
           F Y I I++G L LL+T+ +++Y C R +           +R   V+             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 79  -----DFGPGLEDEAINGYPKILYSEAKLDGKLESAAASG---CSICLGDYKNGDVLRLL 138
                D   GL+   IN YPK  +S+       +     G   CSICL +YK  ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 139 PDCGHLFHIGCIDPWLRLNPSCPVCRTSPLP----TPISTPLAEVVPLA 163
           P+C H FH+ C+D WL+LN SCPVCR SPLP    TP+STPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Spg033018 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-23
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 21  YVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERRDFVVDFGP-------GLED 80
           Y I I+V IL L++ + +A+Y C R+         R E   D V+D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRSKSTG-----RDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 81  EAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDCGHLFHIGCIDPWL 140
             I  YP+I+  +++   +L       CSICL DY+  + +R +P+C H FH  C+D WL
Sbjct: 75  PVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 141 RLNPSCPVCRTSPLPTPISTPLAEVVPLA 163
           R + +CP+CR SP P+ ++TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Spg033018 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-22
Identity = 64/175 (36.57%), Postives = 92/175 (52.57%), Query Frame = 0


Query: 21  YVIGISVGILFLLTTLTIATYFCTRTT-----------------------VPAPIRRRRL 80
           Y I I++G L L++T+ +++Y C R +                       VP  I     
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 81  EERRDFVVDFGPGLEDEAINGYPKILYSE-----AKLDGKLE-SAAASGCSICLGDYKNG 140
           ++     V  G GL+   IN YPK  +++        DG  +     + CSICL +Y   
Sbjct: 88  DDLESGNVVVG-GLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEE 147

Query: 141 DVLRLLPDCGHLFHIGCIDPWLRLNPSCPVCRTSPLP----TPISTPLAEVVPLA 163
           ++LR++P+C H FH+ C+D WL+LN SCPVCR SPLP    TP STPL+EVVPL+
Sbjct: 148 EMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

The following BLAST results are available for this feature:

BLAST of Spg033018 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528902.1	7.4e-75	83.73	RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo]	[more]
XP_022935317.1	1.3e-74	83.73	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
KAG6580759.1	2.8e-74	83.64	putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022983126.1	1.1e-73	83.13	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]
KAA0043799.1	1.8e-68	81.33	RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2...	[more]

BLAST of Spg033018 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	1.0e-42	52.76	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	8.9e-39	49.41	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	1.9e-25	38.46	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9FL42	1.3e-21	36.91	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9M313	3.7e-21	36.57	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of Spg033018 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F576	6.1e-75	83.73	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 ...	[more]
A0A6J1J186	5.2e-74	83.13	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE...	[more]
A0A5A7TRH5	8.5e-69	81.33	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0LEU3	7.2e-68	79.52	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 P...	[more]
A0A498I2L1	4.0e-50	63.37	RING-type domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_019302 P...	[more]

BLAST of Spg033018 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	7.2e-44	52.76	RING/U-box superfamily protein	[more]
AT5G06490.1	6.3e-40	49.41	RING/U-box superfamily protein	[more]
AT2G46160.1	1.4e-26	38.46	RING/U-box superfamily protein	[more]
AT5G07040.1	9.1e-23	36.91	RING/U-box superfamily protein	[more]
AT3G61550.1	2.7e-22	36.57	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 101..142 e-value: 1.8E-8 score: 44.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..143 e-value: 5.8E-14 score: 52.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 101..143 score: 12.651561
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 64..147 e-value: 1.1E-20 score: 75.0
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..164
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 1..164
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 101..143 e-value: 3.1151E-20 score: 76.9569
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 76..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg033018.1	Spg033018.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding