Spg032771 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg032771
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold11: 6883799 .. 6884786 (-)
RNA-Seq ExpressionSpg032771
SyntenySpg032771
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACTGTCTTTGCAAATGATAAGGTTGTTGATTTCATATCTCCTTCTGAGGATTGGAACTTAGAGAGGCTTAGCAGAACAGTGACTAGGGATGACTTTGAAGCTATTAGAAGGGTCCCCATCAATGGAAATCTAGAAGATAAGCTAGTGTGGCATTAAGATAAAATAGGAAAATATAGGGTTAAAAGTGGCTACAAGTTTTATATGAACATAAAAATCGATGGAGTTTCTTCTAGTACATCACCTATGCATCAGGTATGGAAAATTTTGTGGAAACTCAGAGTGCCATCCAAAATATAACACTTTTGTTGGAAAGCCCTAAATGAAATTCTACCCAATAGAATAAATTTGCATAAAATAGGAATAAATACTATTAAAAATTGTCCTATGTGTTCTAATCCTAATGAAAATACTGACCACTGTCTATTTGATTGTCATCAAGCAAGGAAAATCTGGAGGAAGACCTTCAATCGAGTGTTCTTGGATGAAGAATTTAATAGAAGCTTTGCGGATCGTTGGCTGAAGATTGATTCGAACTCTACTATGGCGGAGATGGAGCTGGTGGTTGTGACATGTTGGTCAATCTGGAACGACAAAAATAGATTAACTCATGGAGAACAAATCCCTGGTGTAGAGTTCAAAAGCCAATGGATAGTTAATTATCTGGAGAAATACTTACAAGCCAACATGAAGAACAATCCAAGCATCAATTCAAATCCCCAGACAAAATATCCTCAGCTTTCCTCAAGAGTTGGTAACTGGGTGCCTCCCCTTTGTGGATTATTGGAAAATTAACGTCGATGCGGCCTGGATTCCATCAATTCCGACGACTGGTATAGGGGTGATTTTCAGAAACTCCAACGGTGAAGCTATAGCGGCATCTACGATTTCTCTGGATGCTAACATTGGGGCTCCTCTTTTCGCATTAAGGGCTATTTACGAAGGGATGGTTTTTGCCAAGTCTATGGGTTGCTCCAAATGGTAG

mRNA sequence

ATGGATACTGTCTTTGCAAATGATAAGGTTGTTGATTTCATATCTCCTTCTGAGGATTGGAACTTAGAGAGGCTTAGCAGAACAGTGACTAGGGATGACTTTGAAGCTATTAGAAGGGTCCCCATCAATGGAAATCTAGAAGATAAGCTAGTGAAAATCTGGAGGAAGACCTTCAATCGAGTGTTCTTGGATGAAGAATTTAATAGAAGCTTTGCGGATCGTTGGCTGAAGATTGATTCGAACTCTACTATGGCGGAGATGGAGCTGGTGGTTGTGACATGTTGGTCAATCTGGAACGACAAAAATAGATTAACTCATGGAGAACAAATCCCTGGTGTAGACTTTCCTCAAGAGTTGGTAACTGGGTGCCTCCCCTTTGTGGATTATTGGAAAATTAACGTCGATGCGGCCTGGATTCCATCAATTCCGACGACTGGTATAGGGGTGATTTTCAGAAACTCCAACGGTGAAGCTATAGCGGCATCTACGATTTCTCTGGATGCTAACATTGGGGCTCCTCTTTTCGCATTAAGGGCTATTTACGAAGGGATGGTTTTTGCCAAGTCTATGGGTTGCTCCAAATGGTAG

Coding sequence (CDS)

ATGGATACTGTCTTTGCAAATGATAAGGTTGTTGATTTCATATCTCCTTCTGAGGATTGGAACTTAGAGAGGCTTAGCAGAACAGTGACTAGGGATGACTTTGAAGCTATTAGAAGGGTCCCCATCAATGGAAATCTAGAAGATAAGCTAGTGAAAATCTGGAGGAAGACCTTCAATCGAGTGTTCTTGGATGAAGAATTTAATAGAAGCTTTGCGGATCGTTGGCTGAAGATTGATTCGAACTCTACTATGGCGGAGATGGAGCTGGTGGTTGTGACATGTTGGTCAATCTGGAACGACAAAAATAGATTAACTCATGGAGAACAAATCCCTGGTGTAGACTTTCCTCAAGAGTTGGTAACTGGGTGCCTCCCCTTTGTGGATTATTGGAAAATTAACGTCGATGCGGCCTGGATTCCATCAATTCCGACGACTGGTATAGGGGTGATTTTCAGAAACTCCAACGGTGAAGCTATAGCGGCATCTACGATTTCTCTGGATGCTAACATTGGGGCTCCTCTTTTCGCATTAAGGGCTATTTACGAAGGGATGGTTTTTGCCAAGTCTATGGGTTGCTCCAAATGGTAG

Protein sequence

MDTVFANDKVVDFISPSEDWNLERLSRTVTRDDFEAIRRVPINGNLEDKLVKIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCLPFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAKSMGCSKW
Homology
BLAST of Spg032771 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-10
Identity = 51/165 (30.91%), Postives = 74/165 (44.85%), Query Frame = 0

Query: 52   KIWRKTFN-RVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQI 111
            +IWR  F     L  E N SF + W  +       ++ L  +T W IWND+N L HG+Q+
Sbjct: 1195 QIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQV 1254

Query: 112  PGVDFPQELVTGCL--------------------PFVDYW--------KINVDAAWIPSI 171
              V+F  E +T  L                    P V YW        K+N DAA   + 
Sbjct: 1255 SPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLNTDAACRGA- 1314

Query: 172  PTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA 188
             +T  G I R+S+   +AA++I +   +   L  +R I EG+ FA
Sbjct: 1315 -STSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFA 1357

BLAST of Spg032771 vs. NCBI nr
Match: XP_022155289.1 (uncharacterized protein LOC111022426 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 7.5e-10
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 0

Query: 40  VPINGNLEDK---LVKIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWS 99
           +P+  NL+ K   + +IWR       L   FN  + +RW     N + + + L  +TCW+
Sbjct: 43  IPVLKNLQKKGMEVKQIWRAVLPEAELGSLFNDCYLERWSYWMKNLSASNLRLAEITCWA 102

Query: 100 IWNDKNRLTHGEQIPGVDFPQELVTGCLPFVDYW---------KINVDAAWIPSIPTTGI 159
           +WND N L + ++IP     +      +P V+ W         K+N DAA   S   +G+
Sbjct: 103 LWNDHNALINKKKIPEAPIKRR-----IPRVNAWRPPPLGCVVKMNTDAA--VSTEGSGV 162

Query: 160 GVIFRNSNGEAIAASTISLDAN-IGAPLFA-LRAIYEGMVFAKSMG 192
           GV+ R+ N E +AA    +D + +  PL   + AI EG+  A  +G
Sbjct: 163 GVLLRDGNAEIVAA---MIDFHVVKTPLLTEILAIREGLRLATRLG 198

BLAST of Spg032771 vs. NCBI nr
Match: XP_023884264.1 (uncharacterized protein LOC111996510 [Quercus suber])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-07
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 0

Query: 69  RSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTH-GEQIPGVDFPQELVTG----- 128
           +SF D  L I S++T  ++E+     W++W +KNRL H G  +P +  P  ++T      
Sbjct: 165 KSFLDSILYILSHATFQDLEIFFAIAWAVWFNKNRLVHEGSGLPPMQ-PHGILTKLELPH 224

Query: 129 ----CLPFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALR 188
                LP     KINVD A   S  ++ IGV+ R+S G+ +AA    L A   A L  + 
Sbjct: 225 PAGLSLPLELIHKINVDGASSESDCSSSIGVVIRDSLGQVVAALCKPLQACFPAELTEIM 284

Query: 189 AIYEGMVFAKSM 191
           A+ +G++ A+ +
Sbjct: 285 AVEQGVLLAQEL 295

BLAST of Spg032771 vs. NCBI nr
Match: XP_023874626.1 (uncharacterized protein LOC111987155 [Quercus suber])

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-07
Identity = 45/167 (26.95%), Postives = 73/167 (43.71%), Query Frame = 0

Query: 53   IWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPG 112
            +WR T  ++ +    +R F D   +I       +  +  VT WS+WN++N LT G Q  G
Sbjct: 919  VWRDTKIKLPVVPTSSREFVDVVWEILEARPSIDWVVFAVTAWSLWNNRNTLTFGGQCKG 978

Query: 113  V--------DFPQEL--------------VTGC---LPFVDYWKINVDAAWIPSIPTTGI 172
                     ++ +E+              +  C    P   ++KIN D A    + + GI
Sbjct: 979  QGALIKAAREYVEEIKSVRPPRLGPSHPSLPNCPWLPPHNGWYKINTDGAVFSEMGSCGI 1038

Query: 173  GVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAKSMGCSK 195
            GV+ RN  G  + A +  +D  +GA     RA+ EG+  A  +G  K
Sbjct: 1039 GVVIRNERGLLMGAMSKMIDMPLGALEVEARAVEEGVRLAWDLGLKK 1085

BLAST of Spg032771 vs. NCBI nr
Match: XP_016649695.1 (PREDICTED: uncharacterized protein LOC107881115 [Prunus mume])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-06
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 0

Query: 70  SFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLT-HGEQIPGVDFPQELVTGCLPFVD 129
           SF + W  +   S+  E++L    CW IWND+N L   G  +  V    + +     F  
Sbjct: 385 SFKELWQAVIVVSSKQEVDLFAFLCWDIWNDRNNLLFQGRSLESVSVFNKALAYQTEFYS 444

Query: 130 YWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAK 189
           Y KINVD A   +    G+GV+ RN N E +AA +  +  +     F+ +A  EG+ FA 
Sbjct: 445 Y-KINVDGAAKLAGLVRGVGVVIRNGNKEFMAACSRQVIGH-----FSAQAAKEGLQFAY 501

Query: 190 SMG 192
            +G
Sbjct: 505 DLG 501

BLAST of Spg032771 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-10
Identity = 51/165 (30.91%), Postives = 74/165 (44.85%), Query Frame = 0

Query: 52   KIWRKTFN-RVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQI 111
            +IWR  F     L  E N SF + W  +       ++ L  +T W IWND+N L HG+Q+
Sbjct: 1195 QIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQV 1254

Query: 112  PGVDFPQELVTGCL--------------------PFVDYW--------KINVDAAWIPSI 171
              V+F  E +T  L                    P V YW        K+N DAA   + 
Sbjct: 1255 SPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLNTDAACRGA- 1314

Query: 172  PTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA 188
             +T  G I R+S+   +AA++I +   +   L  +R I EG+ FA
Sbjct: 1315 -STSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFA 1357

BLAST of Spg032771 vs. ExPASy TrEMBL
Match: A0A6J1DPU1 (uncharacterized protein LOC111022426 OS=Momordica charantia OX=3673 GN=LOC111022426 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 0

Query: 40  VPINGNLEDK---LVKIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWS 99
           +P+  NL+ K   + +IWR       L   FN  + +RW     N + + + L  +TCW+
Sbjct: 43  IPVLKNLQKKGMEVKQIWRAVLPEAELGSLFNDCYLERWSYWMKNLSASNLRLAEITCWA 102

Query: 100 IWNDKNRLTHGEQIPGVDFPQELVTGCLPFVDYW---------KINVDAAWIPSIPTTGI 159
           +WND N L + ++IP     +      +P V+ W         K+N DAA   S   +G+
Sbjct: 103 LWNDHNALINKKKIPEAPIKRR-----IPRVNAWRPPPLGCVVKMNTDAA--VSTEGSGV 162

Query: 160 GVIFRNSNGEAIAASTISLDAN-IGAPLFA-LRAIYEGMVFAKSMG 192
           GV+ R+ N E +AA    +D + +  PL   + AI EG+  A  +G
Sbjct: 163 GVLLRDGNAEIVAA---MIDFHVVKTPLLTEILAIREGLRLATRLG 198

BLAST of Spg032771 vs. ExPASy TrEMBL
Match: A0A803NGI9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.4e-07
Identity = 47/165 (28.48%), Postives = 75/165 (45.45%), Query Frame = 0

Query: 52   KIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIP 111
            K+WR     +  D     SFAD  + + +  + +EME ++ T W +WND+N   HG+  P
Sbjct: 869  KVWRVAGISLNFDLVSRMSFADFLMLLSTLKSTSEMEQLLCTLWFLWNDRNNFIHGK--P 928

Query: 112  GV--------------DFPQELV--------TGCL-------PFVDYWKINVDAAWIPSI 171
            G+              +F Q+          TG         P +D  K+NVDAA   S 
Sbjct: 929  GLSPTQLWAKSVAYFCNFQQQSTSSKSIRDSTGAAAQPHWISPPLDKLKMNVDAACDISR 988

Query: 172  PTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA 188
               G+G+I RNS+G+ +AA +  L   +       +A+  G+ +A
Sbjct: 989  NKIGVGIIIRNSSGQVVAAYSKPLTGRLKPQEMEAKALLIGINWA 1031

BLAST of Spg032771 vs. ExPASy TrEMBL
Match: A0A5E4FZN9 (PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 50/173 (28.90%), Postives = 70/173 (40.46%), Query Frame = 0

Query: 52   KIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKN--------- 111
            ++WR +      +E    SF + W  +  +S+  E  L    CW +WN +N         
Sbjct: 1037 EVWRNSAWGNVCEEWRVNSFRELWHALQLSSSGEEQGLFAYLCWGLWNRRNSFIFEGKSE 1096

Query: 112  -------RLT----------------HGEQIPGVDFPQELVTGCL-PFVDYWKINVDAAW 171
                   R+T                HG Q      PQ  + G   P    +KINVD A 
Sbjct: 1097 TATQLLHRMTKLAQEFSNANNLSHTIHGRQ----SSPQAPLHGWRPPPAGIYKINVDGAV 1156

Query: 172  IPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAKSMG 192
                   G+GV+ RN+NGE +AA    + A+ GA    L A  EG+ FA  MG
Sbjct: 1157 KSGDSVRGVGVVVRNANGEFMAACVRRIQASYGARQTELMATIEGLRFAIDMG 1205

BLAST of Spg032771 vs. ExPASy TrEMBL
Match: A0A0Q3GGJ7 (RNase H domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g53033v3 PE=4 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-06
Identity = 39/126 (30.95%), Postives = 57/126 (45.24%), Query Frame = 0

Query: 88  ELVVVTCWSIWNDKNRLTHGEQIPGVDFP----QELVTGCL----------------PFV 147
           EL  V CW IW ++ +L HGE IP  D      Q LV   +                P  
Sbjct: 90  ELCAVACWYIWWERRQLMHGEPIPPPDTTAFSIQALVMNYVRSYSKQSGIQRLGWQKPPE 149

Query: 148 DYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA 194
              K+NVDA++I        G + R+++G  + AS   +     A +    A++ G+ FA
Sbjct: 150 GMQKLNVDASFIEDKEEGATGAVIRDASGLFVRASNSCIPIVYDATMAEAMALWNGIQFA 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.14.4e-1030.91uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022155289.17.5e-1030.12uncharacterized protein LOC111022426 [Momordica charantia][more]
XP_023884264.11.6e-0732.58uncharacterized protein LOC111996510 [Quercus suber][more]
XP_023874626.17.7e-0726.95uncharacterized protein LOC111987155 [Quercus suber][more]
XP_016649695.11.0e-0632.52PREDICTED: uncharacterized protein LOC107881115 [Prunus mume][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX302.1e-1030.91uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DPU13.6e-1030.12uncharacterized protein LOC111022426 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A803NGI96.4e-0728.48Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5E4FZN91.4e-0628.90PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1[more]
A0A0Q3GGJ75.4e-0630.95RNase H domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg032771.1Spg032771.1mRNA