Spg032710 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032710
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PsbP domain-containing protein
Location	scaffold11: 6017144 .. 6020284 (-)
RNA-Seq Expression	Spg032710
Synteny	Spg032710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTGAACTCTCTTCGCCATCGTTAATCTCAGTCTGCTCCTCCCTCTCTCCAAGCTCTCTGAAATGGCGTCAGCTTCTGCATTTACTATTTCCCCATCTTTCCCGAGCTCGGCCTTCCAGAAACCTAAGAGGAAAGCCATTTCCCCGGCGATCTTCTGTCGAAAGGGTTCCCAATTCGGCCTCCGAAGGGACATTTTGAAAGGGCTCACTCTGCTTCCTCTTTCGCTTCCTCTCTTCGATTCGGTAAATCCACTTCCTTCTCAATCGAAAGAGGTCGAAGTTGGCTCATACCTCCCTCCCTCACCGTCAGACCCTTCTTTTGTATTCTTCAAAGCTTCCCCGAGGGACACACCGGCTCTTCGTGCAGGTATTTTGACTTCTTTCTCTATTTTTTCTGTATCAGAAATCGGATGAATGTAGCTAAGTAGTTCATTATTTTGACAAGGAAGATTGTAATTGATTTTTCGGAATTATGAACTCAAAGACTCAAACTCAGAATTATGAACCAAACAAGTTTGAGATTTCTGTTGTGTCGGTCGACGGTCGTGACTCGTCCGCATCAAATACTTTTTGGTTGGTGCTTATCTGAACGTAGTTGGAAAACACTCCGTGAGAATCGGAAATCTTTTCTAGTAAATTGTTTATTGTCCCAGTAGAAGTACAGAACCATAGATTAGTTTCAGTAAATTTTAAATCTCATGGGGCTTCTGGAGATCAGGCTGGCTGTGAACTAAAGATGCCAACTACATGTTGTTGTGCCACCCAATCTTCAGTTTCATTCTTTAGGAAACTTGACACTTTTTATCTCCCATTCACACAACTACAAATAATGATGTGTGGAGTTAAAGAGCATTTTTTAGAGTGATTTACCATTTTCATGTCCAAAATCACTAAAAAGGACATGAAAAAGTGATTTTGATCATCTCAAAATCATTCTCAAACATGTCCTAATGTTGGAAGACATGCTTATGAAATTAAACTTGGGCACAAGGATACCTAGTTTATCGATCATTCCCTCGGAGGCCGATGCAAATAGCTTCTAGGTCTGACCGTACTACTGGCATTAATAATTCATATGATGGTATGGGTCAGTGGAAGGTGATTTAAGTTGTGAGAGTTTGTCTCTAGTTTTTCTGTTACTTTTTATGGTGAGAGATTTCAACCAGTTATATACATTTTTGACCTTGATGTAATAGGCTCCATTTTTGCTTCTGAAGTTAAGAAAGCATATGCTATCTAGGACAGATGCACAAAGCATATGATTGGTTATATTTTTCTTTCTTGTCACCCTCTTCTTAGTTGTTAAATGATTTATATGCTAATGGTACTTGAGATTTAGTTCTTTGCAGGAAATGTGCAACCATACCAGTTCATTCTGCCCCCAACTTGGAAACAAACGCGAGTAGCAAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTAGAGGTGAAATTTGAAGATGACAAACAAGGGAAAATCCAGGTAGTGGCTTCCCCTTTGATACGTCTGACTAATAAGCCTAATGCTACAATTGAAGACATAGGTAGCCCTGAGAAAGTAATTGCTTCTCTTGGCCCTTTTGTTACTGGAAATACATACGACCCTGAAGAGCTCCTTGAATCATCAGTCGAGAAACTTGGTGATCAGACGGTATAATCCTTCTGTGTCTTGTAGATTTTTTTTCTCCTTATAATCTTTCTTTGAGTAGAATAAAGCTATAGAAATAATTTGGGCCCCGTTTGATAACCATTTGGTTTTTGAAAATTATATTTGTTTTCATCCAATTTCCTTTACAATGGTTTTCATTTTTGCTAAGAACACACTTGAGTTCCAAGCCAAATTCCAAAAACAAAAACAAGTTTTTTAAAACTACTTTTTCTAGTTTTCAAAAGTTGACTTGGTTTTTAAAAACATGGAAGGAGGTAGATAGATTAGAAAACAAAGAAACTTACATGTGGAAGTAGTGTTTTTAAGCTTAATTTTCGAAAATCAAAAACCAAAAACCAAATGGTTATCAAACGGGGCCTAGGAGATTTGAGATTTTTTTAAGAAACTTGTAGTTTAGCCGTAGATTCAGTTTAGGCTTTATTCTTTTAAAAGCTTCATTATCATACCTGACTTATTATTAGAACTTACCAAATGTCAGTACCATTACTGAGAAATAACAAAAATCCAATGTGATTTGTTTTTGTGGGCTTGTGGCTACACTGTAGAAGCCGTCATTATCACATATTATTGATTGCACTCAGAAACAGGATTAGCCTAGCCTCCTTTCTACTTTTTAATCAAAACTATGTTTTTAAAATCTAACCCAAATTTATGTTTTTTAATTCTAAAATAAAAGATCACATCATGGAGTTTATTTGTGATATCCATAAATAATTTCCCAAGTTGGATTTCTATTACTCATTATTGACAAGATCTAGTAAATTTTAATCATTACATGGGATGATAATGAAAATTTCAAAAGCATATCAACTAAAACTGAAACTGAAATTAAAGTATTAGTACTAAGATTATAATATAACCTGGAGTATATAGCAGATTCTTCTGGGTGTATATTTATATGCTTAGTTCTTAATTACATCTTCAATTTAGATCAAGTTCATTTAAATTCTTGCTGAACTATCTAGCTAGGACTCCACTTAGACTATAGCAGCTTTGAAGGTTCATGTGCATCACCCTAACTTCTAACACTACTTAGTGAAGATAGTTAATTTACACTTAGCAGCGCAGTGTTAATATATCAGGTACAAAACTCTGATTGTGAATACTTATTAGAACCTTGTTTTATCTCGTTTCTGCAGTATTACAAATACACACTCGAGACTCCTTATGCTCTGACGGGTTCACACAATCTAGCTAAGGCAACGGCGAAAGGAAGCACTGTTGTGTTATTTGTGGCCAGTGCCAATGATAAACAGTGGCAGGCATCTGAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTGTAATTCCTTAACACGAAATGCAAATGAGATTATATTTGATAATACATGCTTCTATCTTCACATATACTGAAGAATATATATTGAGTTCTTCAACATTCCTGTTGCAGCATAGCATTCTTTTTAATACTCTTTAATGGGTGCTTTTTTCCC

mRNA sequence

ATGGCGTCAGCTTCTGCATTTACTATTTCCCCATCTTTCCCGAGCTCGGCCTTCCAGAAACCTAAGAGGAAAGCCATTTCCCCGGCGATCTTCTGTCGAAAGGGTTCCCAATTCGGCCTCCGAAGGGACATTTTGAAAGGGCTCACTCTGCTTCCTCTTTCGCTTCCTCTCTTCGATTCGGTAAATCCACTTCCTTCTCAATCGAAAGAGGTCGAAGTTGGCTCATACCTCCCTCCCTCACCGTCAGACCCTTCTTTTGTATTCTTCAAAGCTTCCCCGAGGGACACACCGGCTCTTCGTGCAGGAAATGTGCAACCATACCAGTTCATTCTGCCCCCAACTTGGAAACAAACGCGAGTAGCAAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTAGAGGTGAAATTTGAAGATGACAAACAAGGGAAAATCCAGGTAGTGGCTTCCCCTTTGATACGTCTGACTAATAAGCCTAATGCTACAATTGAAGACATAGGTAGCCCTGAGAAAGTAATTGCTTCTCTTGGCCCTTTTGTTACTGGAAATACATACGACCCTGAAGAGCTCCTTGAATCATCAGTCGAGAAACTTGGTGATCAGACGTATTACAAATACACACTCGAGACTCCTTATGCTCTGACGGGTTCACACAATCTAGCTAAGGCAACGGCGAAAGGAAGCACTGTTGTGTTATTTGTGGCCAGTGCCAATGATAAACAGTGGCAGGCATCTGAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTGTAA

Coding sequence (CDS)

ATGGCGTCAGCTTCTGCATTTACTATTTCCCCATCTTTCCCGAGCTCGGCCTTCCAGAAACCTAAGAGGAAAGCCATTTCCCCGGCGATCTTCTGTCGAAAGGGTTCCCAATTCGGCCTCCGAAGGGACATTTTGAAAGGGCTCACTCTGCTTCCTCTTTCGCTTCCTCTCTTCGATTCGGTAAATCCACTTCCTTCTCAATCGAAAGAGGTCGAAGTTGGCTCATACCTCCCTCCCTCACCGTCAGACCCTTCTTTTGTATTCTTCAAAGCTTCCCCGAGGGACACACCGGCTCTTCGTGCAGGAAATGTGCAACCATACCAGTTCATTCTGCCCCCAACTTGGAAACAAACGCGAGTAGCAAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTAGAGGTGAAATTTGAAGATGACAAACAAGGGAAAATCCAGGTAGTGGCTTCCCCTTTGATACGTCTGACTAATAAGCCTAATGCTACAATTGAAGACATAGGTAGCCCTGAGAAAGTAATTGCTTCTCTTGGCCCTTTTGTTACTGGAAATACATACGACCCTGAAGAGCTCCTTGAATCATCAGTCGAGAAACTTGGTGATCAGACGTATTACAAATACACACTCGAGACTCCTTATGCTCTGACGGGTTCACACAATCTAGCTAAGGCAACGGCGAAAGGAAGCACTGTTGTGTTATTTGTGGCCAGTGCCAATGATAAACAGTGGCAGGCATCTGAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTGTAA

Protein sequence

MASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDSVNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL

Homology

[Close]

BLAST of Spg032710 vs. NCBI nr
Match: XP_022152863.1 (psbP domain-containing protein 6, chloroplastic [Momordica charantia])

HSP 1 Score: 489.2 bits (1258), Expect = 2.2e-134
Identity = 242/263 (92.02%), Postives = 253/263 (96.20%), Query Frame = 0


Query: 1   MASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDS 60
           MASASAFT  PSFPSS  +KPKRKAISPAIFCR+ SQFGLRR+ILKGL+L PLSLPLF+S
Sbjct: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60

Query: 61  VNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRV 120
           + PLPS+SKEVEVGSYLPPS SDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVA 240
           LGPFVTGN+YDPEELLE+SVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWQASEKVLRTMLDSFQL 264
           SANDKQW ASEK+LRTMLDSFQL
Sbjct: 241 SANDKQWPASEKILRTMLDSFQL 263

[Close]

BLAST of Spg032710 vs. NCBI nr
Match: XP_023521520.1 (psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 488.0 bits (1255), Expect = 5.0e-134
Identity = 241/262 (91.98%), Postives = 255/262 (97.33%), Query Frame = 0


Query: 2   ASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDSV 61
           ++ASAF ISPS P+++ +KPKRK ISPA+FC++GSQF  RR+ILKGLTLLPLSLPLF+SV
Sbjct: 3   SAASAFAISPSLPTASCRKPKRKPISPAVFCQRGSQFVHRREILKGLTLLPLSLPLFESV 62

Query: 62  NPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 121
           +PLPSQSKE+EVGSYLPPS SDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA
Sbjct: 63  HPLPSQSKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 122

Query: 122 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 181
           NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL
Sbjct: 123 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 182

Query: 182 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVAS 241
           GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFVAS
Sbjct: 183 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 242

Query: 242 ANDKQWQASEKVLRTMLDSFQL 264
           ANDKQWQASEKVLRTMLDSFQL
Sbjct: 243 ANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of Spg032710 vs. NCBI nr
Match: XP_022948517.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176.1 PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 487.6 bits (1254), Expect = 6.5e-134
Identity = 241/262 (91.98%), Postives = 255/262 (97.33%), Query Frame = 0


Query: 2   ASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDSV 61
           ++ASAF ISPS P+++ +KPKRK ISPAIFC++GSQFG RR+ILKGLTLLPLSLPLF+SV
Sbjct: 3   SAASAFAISPSLPTASCRKPKRKPISPAIFCQRGSQFGHRREILKGLTLLPLSLPLFESV 62

Query: 62  NPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 121
           +PL S+SKE+EVGSYLPPS SDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA
Sbjct: 63  HPLSSESKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 122

Query: 122 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 181
           NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL
Sbjct: 123 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 182

Query: 182 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVAS 241
           GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFVAS
Sbjct: 183 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 242

Query: 242 ANDKQWQASEKVLRTMLDSFQL 264
           ANDKQWQASEKVLRTMLDSFQL
Sbjct: 243 ANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of Spg032710 vs. NCBI nr
Match: XP_008463519.1 (PREDICTED: psbP domain-containing protein 6, chloroplastic [Cucumis melo] >KAA0051923.1 psbP domain-containing protein 6 [Cucumis melo var. makuwa] >TYK12239.1 psbP domain-containing protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 476.9 bits (1226), Expect = 1.2e-130
Identity = 238/263 (90.49%), Postives = 248/263 (94.30%), Query Frame = 0


Query: 1   MASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDS 60
           MAS SAFTISPSFP S   KPK+K IS +IF +KGSQF  RR+ILKG TLLPLS PLF S
Sbjct: 1   MASVSAFTISPSFPFSTSHKPKKKPISSSIFSQKGSQFVPRREILKGFTLLPLSFPLFQS 60

Query: 61  VNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRV 120
           +NPLPS SKE+EVGSYLPPSPSDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  LNPLPSLSKEIEVGSYLPPSPSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVA 240
           LGPFVTG+TYDP+ELLESSVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWQASEKVLRTMLDSFQL 264
           SANDKQWQASEKVLRTMLDSF+L
Sbjct: 241 SANDKQWQASEKVLRTMLDSFRL 263

[Close]

BLAST of Spg032710 vs. NCBI nr
Match: XP_022998891.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 472.6 bits (1215), Expect = 2.2e-129
Identity = 239/264 (90.53%), Postives = 251/264 (95.08%), Query Frame = 0


Query: 1   MAS-ASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFD 60
           MAS ASA  ISPS P+++ +KP    I PAIFC++GSQFG RR+ILKGLTLLPLSLPLF+
Sbjct: 1   MASVASAIAISPSLPTASCRKP----IYPAIFCQRGSQFGHRREILKGLTLLPLSLPLFE 60

Query: 61  SVNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTR 120
           SV P+PS+SKE+EVGSYLPPS SDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTR
Sbjct: 61  SVYPIPSESKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTR 120

Query: 121 VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA 180
           VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA
Sbjct: 121 VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA 180

Query: 181 SLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFV 240
           SLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFV
Sbjct: 181 SLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFV 240

Query: 241 ASANDKQWQASEKVLRTMLDSFQL 264
           ASANDKQWQASEKVLRTMLDSFQL
Sbjct: 241 ASANDKQWQASEKVLRTMLDSFQL 260

[Close]

BLAST of Spg032710 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.3e-96
Identity = 182/265 (68.68%), Postives = 209/265 (78.87%), Query Frame = 0


Query: 1   MASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRD--ILKGLTLLPLSLPLF 60
           MA+AS    S  F  S       KA S  +      Q   RR   +LK    +P  L L 
Sbjct: 1   MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPRRRELLLKSAVAIPAILQLK 60

Query: 61  DSVNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQT 120
           ++  P+ S ++EVEVGSYLP SPSDPSFV FKA P DTPALRAGNVQPYQF+LPP WKQ 
Sbjct: 61  EA--PI-SAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQL 120

Query: 121 RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVI 180
           R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPLIRLTNKPNATIED+G PEKVI
Sbjct: 121 RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVI 180

Query: 181 ASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLF 240
           ASLGPFVTGN+YD +ELL++S+EK+GDQTYYKY LETP+ALTGSHNLAKATAKGSTVVLF
Sbjct: 181 ASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLF 240

Query: 241 VASANDKQWQASEKVLRTMLDSFQL 264
           V SA +KQWQ+S+K L  +LDSFQL
Sbjct: 241 VVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of Spg032710 vs. ExPASy TrEMBL
Match: A0A6J1DG13 (psbP domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020489 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.1e-134
Identity = 242/263 (92.02%), Postives = 253/263 (96.20%), Query Frame = 0


Query: 1   MASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDS 60
           MASASAFT  PSFPSS  +KPKRKAISPAIFCR+ SQFGLRR+ILKGL+L PLSLPLF+S
Sbjct: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60

Query: 61  VNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRV 120
           + PLPS+SKEVEVGSYLPPS SDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVA 240
           LGPFVTGN+YDPEELLE+SVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWQASEKVLRTMLDSFQL 264
           SANDKQW ASEK+LRTMLDSFQL
Sbjct: 241 SANDKQWPASEKILRTMLDSFQL 263

[Close]

BLAST of Spg032710 vs. ExPASy TrEMBL
Match: A0A6J1G9G7 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452175 PE=4 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 3.2e-134
Identity = 241/262 (91.98%), Postives = 255/262 (97.33%), Query Frame = 0


Query: 2   ASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDSV 61
           ++ASAF ISPS P+++ +KPKRK ISPAIFC++GSQFG RR+ILKGLTLLPLSLPLF+SV
Sbjct: 3   SAASAFAISPSLPTASCRKPKRKPISPAIFCQRGSQFGHRREILKGLTLLPLSLPLFESV 62

Query: 62  NPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 121
           +PL S+SKE+EVGSYLPPS SDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA
Sbjct: 63  HPLSSESKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 122

Query: 122 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 181
           NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL
Sbjct: 123 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 182

Query: 182 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVAS 241
           GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFVAS
Sbjct: 183 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 242

Query: 242 ANDKQWQASEKVLRTMLDSFQL 264
           ANDKQWQASEKVLRTMLDSFQL
Sbjct: 243 ANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of Spg032710 vs. ExPASy TrEMBL
Match: A0A5A7U7M4 (PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00470 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.6e-131
Identity = 238/263 (90.49%), Postives = 248/263 (94.30%), Query Frame = 0


Query: 1   MASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDS 60
           MAS SAFTISPSFP S   KPK+K IS +IF +KGSQF  RR+ILKG TLLPLS PLF S
Sbjct: 1   MASVSAFTISPSFPFSTSHKPKKKPISSSIFSQKGSQFVPRREILKGFTLLPLSFPLFQS 60

Query: 61  VNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRV 120
           +NPLPS SKE+EVGSYLPPSPSDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  LNPLPSLSKEIEVGSYLPPSPSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVA 240
           LGPFVTG+TYDP+ELLESSVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWQASEKVLRTMLDSFQL 264
           SANDKQWQASEKVLRTMLDSF+L
Sbjct: 241 SANDKQWQASEKVLRTMLDSFRL 263

[Close]

BLAST of Spg032710 vs. ExPASy TrEMBL
Match: A0A1S3CJG7 (psbP domain-containing protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501655 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.6e-131
Identity = 238/263 (90.49%), Postives = 248/263 (94.30%), Query Frame = 0


Query: 1   MASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFDS 60
           MAS SAFTISPSFP S   KPK+K IS +IF +KGSQF  RR+ILKG TLLPLS PLF S
Sbjct: 1   MASVSAFTISPSFPFSTSHKPKKKPISSSIFSQKGSQFVPRREILKGFTLLPLSFPLFQS 60

Query: 61  VNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRV 120
           +NPLPS SKE+EVGSYLPPSPSDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  LNPLPSLSKEIEVGSYLPPSPSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFVA 240
           LGPFVTG+TYDP+ELLESSVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWQASEKVLRTMLDSFQL 264
           SANDKQWQASEKVLRTMLDSF+L
Sbjct: 241 SANDKQWQASEKVLRTMLDSFRL 263

[Close]

BLAST of Spg032710 vs. ExPASy TrEMBL
Match: A0A6J1KBG9 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493415 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.1e-129
Identity = 239/264 (90.53%), Postives = 251/264 (95.08%), Query Frame = 0


Query: 1   MAS-ASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRDILKGLTLLPLSLPLFD 60
           MAS ASA  ISPS P+++ +KP    I PAIFC++GSQFG RR+ILKGLTLLPLSLPLF+
Sbjct: 1   MASVASAIAISPSLPTASCRKP----IYPAIFCQRGSQFGHRREILKGLTLLPLSLPLFE 60

Query: 61  SVNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTR 120
           SV P+PS+SKE+EVGSYLPPS SDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTR
Sbjct: 61  SVYPIPSESKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTR 120

Query: 121 VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA 180
           VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA
Sbjct: 121 VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA 180

Query: 181 SLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLFV 240
           SLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTG+HNLAKATAKGSTVVLFV
Sbjct: 181 SLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFV 240

Query: 241 ASANDKQWQASEKVLRTMLDSFQL 264
           ASANDKQWQASEKVLRTMLDSFQL
Sbjct: 241 ASANDKQWQASEKVLRTMLDSFQL 260

[Close]

BLAST of Spg032710 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 352.8 bits (904), Expect = 2.3e-97
Identity = 182/265 (68.68%), Postives = 209/265 (78.87%), Query Frame = 0


Query: 1   MASASAFTISPSFPSSAFQKPKRKAISPAIFCRKGSQFGLRRD--ILKGLTLLPLSLPLF 60
           MA+AS    S  F  S       KA S  +      Q   RR   +LK    +P  L L 
Sbjct: 1   MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPRRRELLLKSAVAIPAILQLK 60

Query: 61  DSVNPLPSQSKEVEVGSYLPPSPSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQT 120
           ++  P+ S ++EVEVGSYLP SPSDPSFV FKA P DTPALRAGNVQPYQF+LPP WKQ 
Sbjct: 61  EA--PI-SAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQL 120

Query: 121 RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVI 180
           R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPLIRLTNKPNATIED+G PEKVI
Sbjct: 121 RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVI 180

Query: 181 ASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGSHNLAKATAKGSTVVLF 240
           ASLGPFVTGN+YD +ELL++S+EK+GDQTYYKY LETP+ALTGSHNLAKATAKGSTVVLF
Sbjct: 181 ASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLF 240

Query: 241 VASANDKQWQASEKVLRTMLDSFQL 264
           V SA +KQWQ+S+K L  +LDSFQL
Sbjct: 241 VVSATEKQWQSSQKTLEAILDSFQL 262

The following BLAST results are available for this feature:

BLAST of Spg032710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152863.1	2.2e-134	92.02	psbP domain-containing protein 6, chloroplastic [Momordica charantia]	[more]
XP_023521520.1	5.0e-134	91.98	psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_022948517.1	6.5e-134	91.98	psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176...	[more]
XP_008463519.1	1.2e-130	90.49	PREDICTED: psbP domain-containing protein 6, chloroplastic [Cucumis melo] >KAA00...	[more]
XP_022998891.1	2.2e-129	90.53	psbP domain-containing protein 6, chloroplastic [Cucurbita maxima]	[more]

BLAST of Spg032710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXX5	3.3e-96	68.68	PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Spg032710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DG13	1.1e-134	92.02	psbP domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A6J1G9G7	3.2e-134	91.98	psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7U7M4	5.6e-131	90.49	PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CJG7	5.6e-131	90.49	psbP domain-containing protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1KBG9	1.1e-129	90.53	psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Spg032710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56650.1	2.3e-97	68.68	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 83..263 e-value: 1.8E-33 score: 117.8
None	No IPR available	PANTHER	PTHR31407:SF18	PSBP DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC	coord: 39..262
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 39..262
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 106..262 e-value: 5.8E-12 score: 46.0
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 102..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032710.1	Spg032710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding