Spg032557 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg032557
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationscaffold3: 23072911 .. 23075508 (-)
RNA-Seq ExpressionSpg032557
SyntenySpg032557
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGAGCGAATTCCGTCTTGCGAGACTATGTCCCCAGCTATCTATTCGATCTTTTCCCCAAAATGGTAGGCTTGTTGAGCCGGCGATGCTGGCCACTCTCACCCATGCAGATGAAAGGATAATCTCGTATAAACAGGAGTTCATAGTTAGCTCAGGAATAAGAACGAGTTACCTAGGTCATCTTTGAGAAATAGTCAGTTTCTTCAGTAAACGGCGTTATAAAGAGAAAGTGACTAATTTTGTGGTCCAGTCTTATGCAAACTCATTGCATAGGACACCCCCACTCGCATGTCTCCACATGAACGATTTAGGATCTCATCGTTTGTACTTAATACAAAGTGGGCCACGTCCATAGTGTCCCCAGGATAAGGCACCCAACCGTATCCTTATACTATAGACCATTTTTACTATAAACTTGAACTTGATCCTACGATATGTAGGGACATATAGTTCGAGTATTCATTTTATAGCCAAGGATCTTAGTTTATTGGAGTTAGGTTAATCATTCGCAATTTACATATTCAATAACATCTTTTACTGAATAACTTCAATAACATCTTTATTGGAAATAGAATATGTTTAATGATTTACAAACTACGAGTTTATAGGACATTAAACCCAACATTATGGACTCCTGTCCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTATTCGCCGACTCAATAAGCCTACCATTTTGGGGAGAAGACCGAGTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCATTCCCGTCTTTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACAAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATGAACAGGTAGCCCAGGGGTAAAACGATAATTTGACCTAGCTGGGGTACGAACACACGTGAAGGGCTAACTTGCTGTTGATGGTCGATATCCGTGGACACAGAAATATATCTGTAGTGAGAAGAGTGCAGCTGTGGTTCTATGGTGGAGTGAACCACAGTTAACGAATATTGATTAACTTGGTTAATGAGTTTAGCCAATTAATCTCATATCGTTGGAGCTTATGATCTGTAGGTCCATTAGGTCCCACCGGTAGCTCTATAAGGGCGTTGAGGTAAATTTCTAAGGGTGAATTGAATATTCAAAGGAGTTTGAATATTAAGTTAAATATGAATTTGATTCATATTAAAAACTATAGGTTATAATTAATGCACATATGATGTAAATTAATTCTATAGTTAATTTGAGAGAAATATAATTAAATATATGATATTTAATTGTGATATTAATTAATTGGTGAATTAATTAATATTTTGGTTTTAATTTTTTAATTAAATTTGATTTGATTAAGTAATATTAAAACTATAGGTTAAATGGAGTTTATTTTGTATAAATAGGTTTATACAAATGGCATTTAATTAAATTAATAGTTAATTTAATTAAAAGATTAATTAATATTATTTAATATTAATTAAATCTTTTCCCATCAGTTAGGTTAACTGATGGGAACGTGTCCTCCATTTTTCCTTCAGTTTTGCGTGAATGGGAGAGTTTTAAGGAGGGAGTTGGGCAATTTTACGGCAACTCAATTTTATTCAGTTTTGGGATCTCTCTCTAACGCAGAACAATCTCTCTCTCTCAATCTGAAGTTCTCTCTCTAGATTTCTCTTCCAAAGAATACAGAGAACACAATTCACCAAAAACCCTTAGAGATCGCGCTCCCACAAGCCCCTAACGCATATCCTTCAAGAGAATACCGGTGCAACCTTGGTGGTGGTGTTCGTGGCTATTTTACAGCAAGATCAAGGACCTCTTGCTGCTGGTTTTGGGTGAAAATCTAGGAGATTTGGTGAAACAGTTCAAGAATTTCTACAAAGGTATAGTATATTCTTGACCTTGGATCAATAGGATCCTTCTTAGATTAGATCATGTTTTATAATATGTTACAGCATGTTTTAATTATATTAATCTGCTGTAATTTTATTTGTCGTCGTATTGGTATCCCAATCGGCGTTTAAATCGAAAAAGGTTTTTGACGTCTTCCGCTGCCTAGGGTTATTATCCCTACAATTGGTATCAGAGCCCTATCGAATTTTAAACGTTGTTTTTGAGATTTGCGATTGGCTATGATAGGTGGGATCAATTGCATTGTGAATGTAAGGGTTTGCGATAAACTGTTTAGATTTAATTTGGCCTTAGATTTACAGTTTTTTCATTGATTTGATCATGTAAGGGCCCCTGCGTTTTGGGCATTATACTATAAATCGAGTCTGTAAAGTCCGGGTCTAGATTAGGATTGAAGATCGGTGAAAATCGCAGCGGGATTGCATCAATTCTGTGAAGAACAGCCGCGGTTTTGCCCAGAAAACAGCTCCAGACGCTGTCGCGATTTCACGCTACGGATTGTTGAAATCGCGCCAGCGTCGGGACGCTATCGCTAAAGCGTCTCGACGCTGTCGCGATTTCGTGCGGCAGTTGGGATTTACGTGCAGACATGGGTTGAAACCCTAA

mRNA sequence

ATGGGTAGGAGCGAATTCCGTCTTGCGAGACTATGTCCCCAGCTATCTATTCGATCTTTTCCCCAAAATGGTAGGCTTGTTGAGCCGGCGATGCTGGCCACTCTCACCCATGCAGATGAAAGGATAATCTCGTATAAACAGGAGTTCATAGTTAGCTCAGGAATAAGAACGAGTTACCTAGGTCCATTAGGTCCCACCGGTAGCTCTATAAGGGCGTTGAGCAAGATCAAGGACCTCTTGCTGCTGGTTTTGGGTGAAAATCTAGGAGATTTGGTGAAACAGTTCAAGAATTTCTACAAAGCTCCAGACGCTGTCGCGATTTCACGCTACGGATTGTTGAAATCGCGCCAGCGTCGGGACGCTATCGCTAAAGCGTCTCGACGCTGTCGCGATTTCGTGCGGCAGTTGGGATTTACGTGCAGACATGGGTTGAAACCCTAA

Coding sequence (CDS)

ATGGGTAGGAGCGAATTCCGTCTTGCGAGACTATGTCCCCAGCTATCTATTCGATCTTTTCCCCAAAATGGTAGGCTTGTTGAGCCGGCGATGCTGGCCACTCTCACCCATGCAGATGAAAGGATAATCTCGTATAAACAGGAGTTCATAGTTAGCTCAGGAATAAGAACGAGTTACCTAGGTCCATTAGGTCCCACCGGTAGCTCTATAAGGGCGTTGAGCAAGATCAAGGACCTCTTGCTGCTGGTTTTGGGTGAAAATCTAGGAGATTTGGTGAAACAGTTCAAGAATTTCTACAAAGCTCCAGACGCTGTCGCGATTTCACGCTACGGATTGTTGAAATCGCGCCAGCGTCGGGACGCTATCGCTAAAGCGTCTCGACGCTGTCGCGATTTCGTGCGGCAGTTGGGATTTACGTGCAGACATGGGTTGAAACCCTAA

Protein sequence

MGRSEFRLARLCPQLSIRSFPQNGRLVEPAMLATLTHADERIISYKQEFIVSSGIRTSYLGPLGPTGSSIRALSKIKDLLLLVLGENLGDLVKQFKNFYKAPDAVAISRYGLLKSRQRRDAIAKASRRCRDFVRQLGFTCRHGLKP
Homology
[Close]
BLAST of Spg032557 vs. NCBI nr
Match: TYK16320.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-04
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 2   GRSEFRLARLCPQLSIRSFPQNGRLVEPAMLATLTHADERIISYKQEFIVSSGIRTSYLG 61
           GRSEF  A   P   +   P+ G L+     A LT+AD RI+  +Q+FIVS G+R+SYLG
Sbjct: 810 GRSEFHFAPYVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYLG 869

Query: 62  PLGPTGSSIRALSKIKD 79
                G  I   +KIK+
Sbjct: 870 E-EINGGRINEKTKIKN 885

[Close]
BLAST of Spg032557 vs. ExPASy TrEMBL
Match: A0A5D3CY86 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001000 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 2   GRSEFRLARLCPQLSIRSFPQNGRLVEPAMLATLTHADERIISYKQEFIVSSGIRTSYLG 61
           GRSEF  A   P   +   P+ G L+     A LT+AD RI+  +Q+FIVS G+R+SYLG
Sbjct: 810 GRSEFHFAPYVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYLG 869

Query: 62  PLGPTGSSIRALSKIKD 79
                G  I   +KIK+
Sbjct: 870 E-EINGGRINEKTKIKN 885

The following BLAST results are available for this feature:
BLAST of Spg032557 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK16320.14.6e-0442.86retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
BLAST of Spg032557 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg032557 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CY862.2e-0442.86Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
BLAST of Spg032557 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg032557.1Spg032557.1mRNA