Spg032539 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg032539
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold3: 23268311 .. 23268883 (+)
RNA-Seq ExpressionSpg032539
SyntenySpg032539
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTTCCTTTGGGTGCCCATTAACTATTTTAGGCTTTCCTCTTGGAGGAAACCACCACATAAGACACCTTTGGGATCCTCTCATCGAAAAAATAAAAGCTTGGTTGGATGGATGGAGGAGCCTCCTTTCAAAAGGGGATAGGGTCACTCTTGCTCAATTAGTTATGAATAGCTTACCTATCTACTGCATCTCTCTCCTCTGGGCCTTGAAGAATTTGACTAAGTTCATGGAAAAGATTATCATAGACTTCATTTGGAATGGTGGTGTTTACAAGCCTATTTGCAACTTGGTGAAATGGGAGTGGATAACTCTGCCTACATCGCTTGGGAGGCTGTGAGTAGGTTCACTCAATCACCAAAACACTTCTATGCTCACGAAGTGGATCTTGAGATTCACTCAAGAAGAAAATCCCCTTTGGAAGATGGTTATATCTAGTATTTATGATGTGAATTCTCATGGGTGGATGATGGTTATATCTAGTATTTATGATGTGAATTCTCATGGGTGGATGACTGATGAGATTAGGAAGAAAAAAGGGATGGATCCTTTGGAAGATGGTTATAACTAG

mRNA sequence

ATGGCATCTTCCTTTGGGTGCCCATTAACTATTTTAGGCTTTCCTCTTGGAGGAAACCACCACATAAGACACCTTTGGGATCCTCTCATCGAAAAAATAAAAGCTTGGTTGGATGGATGGAGGAGCCTCCTTTCAAAAGGGGATAGGGTCACTCTTGCTCAATTAGTTATGAATAGCTTACCTATCTACTGCATCTCTCTCCTCTGGGCCTTGAAGAATTTGACTAAGTTCATGGAAAAGATTATCATAGACTTCATTTGGAATGGTGGTGTTTACAAGCCTATTTGCAACTTGGTGAAATGGGAGTGGATAACTCTGCCTACATCGCTTGGGAGGCTTATTTATGATGTGAATTCTCATGGGTGGATGACTGATGAGATTAGGAAGAAAAAAGGGATGGATCCTTTGGAAGATGGTTATAACTAG

Coding sequence (CDS)

ATGGCATCTTCCTTTGGGTGCCCATTAACTATTTTAGGCTTTCCTCTTGGAGGAAACCACCACATAAGACACCTTTGGGATCCTCTCATCGAAAAAATAAAAGCTTGGTTGGATGGATGGAGGAGCCTCCTTTCAAAAGGGGATAGGGTCACTCTTGCTCAATTAGTTATGAATAGCTTACCTATCTACTGCATCTCTCTCCTCTGGGCCTTGAAGAATTTGACTAAGTTCATGGAAAAGATTATCATAGACTTCATTTGGAATGGTGGTGTTTACAAGCCTATTTGCAACTTGGTGAAATGGGAGTGGATAACTCTGCCTACATCGCTTGGGAGGCTTATTTATGATGTGAATTCTCATGGGTGGATGACTGATGAGATTAGGAAGAAAAAAGGGATGGATCCTTTGGAAGATGGTTATAACTAG

Protein sequence

MASSFGCPLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGWRSLLSKGDRVTLAQLVMNSLPIYCISLLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRLIYDVNSHGWMTDEIRKKKGMDPLEDGYN
Homology
BLAST of Spg032539 vs. NCBI nr
Match: RVW84593.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-15
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = 0

Query: 1   MASSFGC-----PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGW-RSLLSKGDRVTLAQ 60
           +A  FGC     P T LG PLG    +  +WD + E+ +  L  W R  LSKG R TL +
Sbjct: 374 LAGDFGCSLGSLPTTYLGMPLGAPFKLVTVWDGVEERFRRRLTMWKRQYLSKGGRATLIR 433

Query: 61  LVMNSLPIYCISLLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRLI 120
             +++LPIY +SLL    ++ + +EKI  DF+W GG  +   +LV+WE + L     ++I
Sbjct: 434 STLSNLPIYLMSLLCLPSSVRRRLEKIQRDFLWGGGNLEHKPHLVRWELVCLKALWNQVI 493

Query: 121 ---YDVNSHGWMTDEIRKKKGM 134
              Y     GW   E+RK  G+
Sbjct: 494 RGKYGEARGGWCAREMRKPHGL 515

BLAST of Spg032539 vs. NCBI nr
Match: XP_028112693.1 (uncharacterized protein LOC114310799 [Camellia sinensis])

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-15
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 0

Query: 12  LGFPLGGNHHIRHLWDPLIEKIKAWLDGW-RSLLSKGDRVTLAQLVMNSLPIYCISLLWA 71
           LG PLGGN      WDP++EKI  WL GW R+LLS+G R TL + V++ + IY +S+   
Sbjct: 4   LGLPLGGNPRGEVFWDPVVEKIGKWLKGWRRALLSRGGRYTLVKTVLSGISIYFMSVFKI 63

Query: 72  LKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRL 114
             N+ KF+EK+  DF+W G       +LVKWE ++L    G L
Sbjct: 64  PVNVAKFIEKLFRDFLWEGKDEGWKDHLVKWETVSLCKEKGGL 106

BLAST of Spg032539 vs. NCBI nr
Match: XP_026438270.1 (uncharacterized protein LOC113336811 [Papaver somniferum])

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-15
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 0

Query: 1   MASSFGC-----PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGWRSL-LSKGDRVTLAQ 60
           +A++ GC     P T LG PLG  +   + WD +IE+ +A L  W ++ LS G R+TL  
Sbjct: 440 LATTLGCKTMVLPSTYLGLPLGEAYRSNNKWDRIIERFEARLPSWMAINLSPGGRLTLII 499

Query: 61  LVMNSLPIYCISLLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRL 114
            V+ SLPIY  SL +A  N+ K +E+II +F+W+GGV +   + V W+ +  P +LG L
Sbjct: 500 FVLMSLPIYLFSLFFAPINVIKKLERIIRNFLWDGGVDRKKYHPVAWDIVLKPKNLGGL 558

BLAST of Spg032539 vs. NCBI nr
Match: RVW36182.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 0

Query: 8   PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGW-RSLLSKGDRVTLAQLVMNSLPIYCIS 67
           P + LG PLG NH    +WD + E+ +  L  W R  +SKG R+TL +  ++S+PIY +S
Sbjct: 291 PSSYLGIPLGANHKSVAVWDGVEERFRKRLALWKRQFISKGGRITLIRSTLSSMPIYLMS 350

Query: 68  LLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRLIYDVNSHGWMTDE 127
           LL   + ++  +EKI  DF+W GG  +   +LV W+ + +    G L +     GW + E
Sbjct: 351 LLRMPRVVSLRLEKIQRDFLWGGGALERKPHLVNWDTVCMDKRKGGLGFGEEEGGWGSRE 410

Query: 128 IRKKKGM 134
           +R+  G+
Sbjct: 411 VRESYGV 417

BLAST of Spg032539 vs. NCBI nr
Match: RVX11981.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 45/119 (37.82%), Postives = 69/119 (57.98%), Query Frame = 0

Query: 1    MASSFGC-----PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGW-RSLLSKGDRVTLAQ 60
            +A+  GC     P+  LG PLG +H     WD + E+++  L  W R  +SKG R+TL +
Sbjct: 967  LAAELGCRLGVLPIVYLGLPLGAHHKTSSCWDGVEERMRRRLAQWKRQYISKGGRITLIK 1026

Query: 61   LVMNSLPIYCISLLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRL 114
              + S+PIY +SL+   K++TK +EKI  DF+W GG  +   +L+KW+ +  P   G L
Sbjct: 1027 STLASIPIYFLSLIRIPKSVTKRIEKIQRDFLWGGGSLERKAHLIKWKVVCSPKEEGGL 1085

BLAST of Spg032539 vs. ExPASy TrEMBL
Match: A0A803QQM3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.4e-17
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = 0

Query: 2    ASSFGC-----PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGWR-SLLSKGDRVTLAQL 61
            A   GC     P+T LG PLGG+   R  W+P+++K    +DGW+ S LS+G R+TL Q 
Sbjct: 1662 AIQIGCEVGRWPMTYLGMPLGGSPRKRSFWEPVLDKCATRMDGWKCSFLSRGGRLTLIQS 1721

Query: 62   VMNSLPIYCISLLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRL 114
            V++SLPIY +SL  A K + K +EK++ DF W GG      +LV W+ +  P + G L
Sbjct: 1722 VLSSLPIYFLSLFKAPKVVLKELEKMMRDFFWEGGDLAGGDHLVAWDEVCKPRAEGGL 1779

BLAST of Spg032539 vs. ExPASy TrEMBL
Match: A0A803PZR9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.5e-16
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 0

Query: 2   ASSFGC-----PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGWR-SLLSKGDRVTLAQL 61
           A+  GC     P+  LG PL G+   +  WDP++EK    LDGW+ + LS+G R TL Q 
Sbjct: 655 AAQIGCEVGCWPMKYLGMPLAGSPRKKIFWDPVLEKCAKRLDGWKCAFLSRGGRYTLIQS 714

Query: 62  VMNSLPIYCISLLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLP 108
           V++SLPIY + L  AL ++   +EK++ DF+W GG      +L+ W+W+  P
Sbjct: 715 VLSSLPIYFLPLFKALSSMINTLEKLMRDFLWEGGDLGGGDHLMAWDWVCKP 766

BLAST of Spg032539 vs. ExPASy TrEMBL
Match: A0A803P8A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.5e-16
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 0

Query: 2   ASSFGC-----PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGWR-SLLSKGDRVTLAQL 61
           A+  GC     P+T LG PLGG+   +  W+P+++K    +DGW+ S LS+G R+TL Q 
Sbjct: 739 ANLIGCEVGKWPMTYLGMPLGGSPRKKTFWEPVLDKCAKRMDGWKCSFLSRGGRLTLIQS 798

Query: 62  VMNSLPIYCISLLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRL 114
           V++SLPIY +SL    K + K +EK++ DF W GG      +LV W+ +  P + G L
Sbjct: 799 VLSSLPIYYLSLFKVPKMVLKELEKMMRDFFWEGGDLAGGDHLVAWDEVCKPRAEGGL 856

BLAST of Spg032539 vs. ExPASy TrEMBL
Match: A0A803PSR8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.3e-16
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 0

Query: 8   PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGWR-SLLSKGDRVTLAQLVMNSLPIYCIS 67
           P+T LG PLGG+      W+P+++K    LDGW+ S LS+  R+TL Q V++SLPIY +S
Sbjct: 99  PMTYLGMPLGGSPRKETFWEPVLDKCAKRLDGWKCSFLSRRGRLTLIQSVLSSLPIYYLS 158

Query: 68  LLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRL 114
           L  A K + K +EK++ DF W GG      +LV W+ +  P S G L
Sbjct: 159 LFKAPKMVLKAIEKMMRDFFWEGGDLAGADHLVAWDELCKPRSEGGL 205

BLAST of Spg032539 vs. ExPASy TrEMBL
Match: A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 0

Query: 1    MASSFGC-----PLTILGFPLGGNHHIRHLWDPLIEKIKAWLDGWR-SLLSKGDRVTLAQ 60
            +A   GC     PL  LG PLGG+      W+P+++K    LDGW+ + LSKG R+TL Q
Sbjct: 1439 LARRIGCEVGSWPLQYLGMPLGGSPRKWSFWEPVMDKCAKRLDGWKCAFLSKGGRLTLIQ 1498

Query: 61   LVMNSLPIYCISLLWALKNLTKFMEKIIIDFIWNGGVYKPICNLVKWEWITLPTSLGRL 114
             V++SLP+Y +SL  A +++TK +EK++ DF+W G       +LV W+ +  P   G L
Sbjct: 1499 SVLSSLPLYFLSLFKAPRSVTKALEKMMRDFLWEGSESSGGEHLVAWDEVCRPRHEGGL 1557

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW84593.13.3e-1536.62Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
XP_028112693.14.3e-1544.66uncharacterized protein LOC114310799 [Camellia sinensis][more]
XP_026438270.19.5e-1540.34uncharacterized protein LOC113336811 [Papaver somniferum][more]
RVW36182.11.2e-1435.43putative ribonuclease H protein [Vitis vinifera][more]
RVX11981.11.6e-1437.82putative ribonuclease H protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803QQM38.4e-1742.37Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PZR95.5e-1640.18Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803P8A05.5e-1640.68Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PSR89.3e-1643.93Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803P4651.2e-1540.34Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 140..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg032539.1Spg032539.1mRNA