Spg032537 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032537
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	la-related protein 6B
Location	scaffold3: 23231967 .. 23232914 (+)
RNA-Seq Expression	Spg032537
Synteny	Spg032537

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATATATTTTAATATTTACTTTTCTTCTTCCTCTTCTTCTTCCTCGGCAGAGGACACTCTGTGTTCCTCTCGGACTCGATCTCCAGATTTTCAGTTCACAGAACCTCCATATTCATCTCTTTCCTTCCACCAAATGGCACAACATTCTTCCTCTTCGCCTCCCGATTCCTCTTCCCAATCCGATCCATCTCTTTCTCGCAACTCTTCTCTCAGTCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCCCCTCCCCTCGTCCCGATCTACAACCGCCGCAGTCCGCCCCCGGCCCCCCGCCTCCTCCGCCCAAGCAATCGCCCCGGATTCTCATCCCTTCTCCTCCTCCGCCGCCGGCCATCATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGACCCCTGTCCCCGTCCCCACTCATGTCGTTTCCATTCAGAATCATCATCACTATCACCCTCATCACCGCCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTCCATGAGCCCGACACCGTTGTGCAGCAACCTCAGAAGCCACAGGCTGAGTCCGACTATGGTGCTCCATCGAGGACTAAACTCACTGAGGAAGTCTCCCAAAAGCTTTTGAATCAGGTTGCCTTTGCCTTTTCTTTTCACTAGATCCTGTATATTTATGCTCTTCTCTCTATGTCAAGATTTTGATATCAGATTGTTCAATCTTTACGTTGGTTTGAAGCTGAATGTCATATCCGTCTGTCAAATCTCTATGGGTTAATTTTATGAAGCACCGTAACTCATGGAGCTATTATGTTTTGACCCTGCAAATTCTGTTGCTTCTCTAGGCACACATAGAGTTAGCTGGAAGTCAGGGTTACTTGAAAGGGTTTAAAACTCGCTAG

mRNA sequence

ATGGCACAACATTCTTCCTCTTCGCCTCCCGATTCCTCTTCCCAATCCGATCCATCTCTTTCTCGCAACTCTTCTCTCAGTCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCCCCTCCCCTCGTCCCGATCTACAACCGCCGCAGTCCGCCCCCGGCCCCCCGCCTCCTCCGCCCAAGCAATCGCCCCGGATTCTCATCCCTTCTCCTCCTCCGCCGCCGGCCATCATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGACCCCTGTCCCCGTCCCCACTCATGTCGTTTCCATTCAGAATCATCATCACTATCACCCTCATCACCGCCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTCCATGAGCCCGACACCGTTGTGCAGCAACCTCAGAAGCCACAGGCTGAGTCCGACTATGGTGCTCCATCGAGGACTAAACTCACTGAGGAAGTCTCCCAAAAGCTTTTGAATCAGGCACACATAGAGTTAGCTGGAAGTCAGGGTTACTTGAAAGGGTTTAAAACTCGCTAG

Coding sequence (CDS)

ATGGCACAACATTCTTCCTCTTCGCCTCCCGATTCCTCTTCCCAATCCGATCCATCTCTTTCTCGCAACTCTTCTCTCAGTCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCCCCTCCCCTCGTCCCGATCTACAACCGCCGCAGTCCGCCCCCGGCCCCCCGCCTCCTCCGCCCAAGCAATCGCCCCGGATTCTCATCCCTTCTCCTCCTCCGCCGCCGGCCATCATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGACCCCTGTCCCCGTCCCCACTCATGTCGTTTCCATTCAGAATCATCATCACTATCACCCTCATCACCGCCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTCCATGAGCCCGACACCGTTGTGCAGCAACCTCAGAAGCCACAGGCTGAGTCCGACTATGGTGCTCCATCGAGGACTAAACTCACTGAGGAAGTCTCCCAAAAGCTTTTGAATCAGGCACACATAGAGTTAGCTGGAAGTCAGGGTTACTTGAAAGGGTTTAAAACTCGCTAG

Protein sequence

MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQAHIELAGSQGYLKGFKTR

Homology

[Close]

BLAST of Spg032537 vs. NCBI nr
Match: XP_022157471.1 (la-related protein 6B [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-75
Identity = 164/181 (90.61%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 5   SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPK 64
           SSSS P SS  SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQP QSAPGPPPPP K
Sbjct: 23  SSSSSPSSSAPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPQQSAPGPPPPPQK 82

Query: 65  QSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHHRHHH 124
           QSPRILIPSPPPPP ++HVYPP PPGSPFHVPIQ+PVPVPT VVSIQN HHYHPHHRHHH
Sbjct: 83  QSPRILIPSPPPPPGVLHVYPPHPPGSPFHVPIQSPVPVPTRVVSIQN-HHYHPHHRHHH 142

Query: 125 HSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLN 184
           HSHHVPVLYHPHNPQYYADNGGFHEPD VVQQPQKPQ ESDY APSR+KLTEEVSQKLLN
Sbjct: 143 HSHHVPVLYHPHNPQYYADNGGFHEPDAVVQQPQKPQVESDYAAPSRSKLTEEVSQKLLN 202

[Close]

BLAST of Spg032537 vs. NCBI nr
Match: XP_038888029.1 (la-related protein 6B [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 9.9e-74
Identity = 167/185 (90.27%), Postives = 170/185 (91.89%), Query Frame = 0


Query: 1   MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG-PPPP 60
           MAQHS      SSSQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DLQPPQSAPG PPPP
Sbjct: 1   MAQHS------SSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQPPQSAPGPPPPP 60

Query: 61  PPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHHR 120
           PPKQSPRILIPSPPPPPA+MHVY PPPPGSPFHVPIQTPVPVPTHVVSIQN HHYHPHHR
Sbjct: 61  PPKQSPRILIPSPPPPPAMMHVY-PPPPGSPFHVPIQTPVPVPTHVVSIQN-HHYHPHHR 120

Query: 121 HHHHSHHVPVLYHPHNPQYYADNGGFHEPDT-VVQQPQKPQAESDYGAPSRTKLTEEVSQ 180
           HHHHSHHVPVLYHPHNPQYYADNGGFH+PDT VVQQPQKP  ESDY APSR+KLTEEVSQ
Sbjct: 121 HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQPQKPLVESDYAAPSRSKLTEEVSQ 177

Query: 181 KLLNQ 184
           KLLNQ
Sbjct: 181 KLLNQ 177

[Close]

BLAST of Spg032537 vs. NCBI nr
Match: XP_022969525.1 (la-related protein 6B-like [Cucurbita maxima])

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-71
Identity = 166/197 (84.26%), Postives = 170/197 (86.29%), Query Frame = 0


Query: 1   MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSA 60
           MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPPQS+
Sbjct: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60

Query: 61  PG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQT----PVPVPTHVVS 120
            G  PPPPP KQSPRILIPSPPPPPA+MHVYPPPPPGSPFHVPIQ+    PVPVPTHVVS
Sbjct: 61  SGSQPPPPPSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVS 120

Query: 121 IQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGA 180
           I N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGA
Sbjct: 121 IPN-HHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGA 180

Query: 181 PSRTKLTEEVSQKLLNQ 184
           PSRTKLT EVSQKLLNQ
Sbjct: 181 PSRTKLTGEVSQKLLNQ 196

[Close]

BLAST of Spg032537 vs. NCBI nr
Match: XP_022928061.1 (la-related protein 6B-like [Cucurbita moschata])

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-71
Identity = 167/197 (84.77%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG 60
           MA HSSSSP     P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+ G
Sbjct: 1   MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60

Query: 61  --PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQT----PVPVPTHVVS 120
             PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGSPFHVPIQ+    PVPVPTHVVS
Sbjct: 61  SQPPPPPPSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVS 120

Query: 121 IQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGA 180
           I N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGA
Sbjct: 121 IPN-HHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGA 180

Query: 181 PSRTKLTEEVSQKLLNQ 184
           PSRTKLTEEVSQKLLNQ
Sbjct: 181 PSRTKLTEEVSQKLLNQ 196

[Close]

BLAST of Spg032537 vs. NCBI nr
Match: KAG6588510.1 (La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277.3 bits (708), Expect = 1.0e-70
Identity = 167/203 (82.27%), Postives = 171/203 (84.24%), Query Frame = 0


Query: 1   MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSA 60
           MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+
Sbjct: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS 60

Query: 61  PG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQT--------PVPV 120
            G  PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGSPFHVPIQ+        PVPV
Sbjct: 61  SGSQPPPPPPSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPVPV 120

Query: 121 PTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQA 180
           PTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  
Sbjct: 121 PTHVVSIPN-HHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPV 180

Query: 181 ESDYGAPSRTKLTEEVSQKLLNQ 184
           ESDYGAPSRTKLTEEVSQKLLNQ
Sbjct: 181 ESDYGAPSRTKLTEEVSQKLLNQ 202

[Close]

BLAST of Spg032537 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 9.2e-14
Identity = 79/198 (39.90%), Postives = 104/198 (52.53%), Query Frame = 0


Query: 4   HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQ 63
           HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q
Sbjct: 24  HSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTT----------------PPLPQ 83

Query: 64  SPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHHRHHHH 123
            PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  H+V +QNHH +H  H+HHHH
Sbjct: 84  PPRMIIP-PPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHH 143

Query: 124 SHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYG 183
           + H     VPV  H    Q     GG  EPD V ++              Q  +  +   
Sbjct: 144 NRHQNQQYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVS 200

[Close]

BLAST of Spg032537 vs. ExPASy TrEMBL
Match: A0A6J1DY71 (la-related protein 6B OS=Momordica charantia OX=3673 GN=LOC111024163 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 164/181 (90.61%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 5   SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPK 64
           SSSS P SS  SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQP QSAPGPPPPP K
Sbjct: 23  SSSSSPSSSAPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPQQSAPGPPPPPQK 82

Query: 65  QSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHHRHHH 124
           QSPRILIPSPPPPP ++HVYPP PPGSPFHVPIQ+PVPVPT VVSIQN HHYHPHHRHHH
Sbjct: 83  QSPRILIPSPPPPPGVLHVYPPHPPGSPFHVPIQSPVPVPTRVVSIQN-HHYHPHHRHHH 142

Query: 125 HSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLN 184
           HSHHVPVLYHPHNPQYYADNGGFHEPD VVQQPQKPQ ESDY APSR+KLTEEVSQKLLN
Sbjct: 143 HSHHVPVLYHPHNPQYYADNGGFHEPDAVVQQPQKPQVESDYAAPSRSKLTEEVSQKLLN 202

[Close]

BLAST of Spg032537 vs. ExPASy TrEMBL
Match: A0A6J1I059 (la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111468508 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.6e-72
Identity = 166/197 (84.26%), Postives = 170/197 (86.29%), Query Frame = 0


Query: 1   MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSA 60
           MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPPQS+
Sbjct: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60

Query: 61  PG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQT----PVPVPTHVVS 120
            G  PPPPP KQSPRILIPSPPPPPA+MHVYPPPPPGSPFHVPIQ+    PVPVPTHVVS
Sbjct: 61  SGSQPPPPPSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVS 120

Query: 121 IQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGA 180
           I N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGA
Sbjct: 121 IPN-HHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGA 180

Query: 181 PSRTKLTEEVSQKLLNQ 184
           PSRTKLT EVSQKLLNQ
Sbjct: 181 PSRTKLTGEVSQKLLNQ 196

[Close]

BLAST of Spg032537 vs. ExPASy TrEMBL
Match: A0A6J1EJ80 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111434957 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.0e-71
Identity = 167/197 (84.77%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG 60
           MA HSSSSP     P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+ G
Sbjct: 1   MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 60

Query: 61  --PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQT----PVPVPTHVVS 120
             PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGSPFHVPIQ+    PVPVPTHVVS
Sbjct: 61  SQPPPPPPSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVS 120

Query: 121 IQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGA 180
           I N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGA
Sbjct: 121 IPN-HHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGA 180

Query: 181 PSRTKLTEEVSQKLLNQ 184
           PSRTKLTEEVSQKLLNQ
Sbjct: 181 PSRTKLTEEVSQKLLNQ 196

[Close]

BLAST of Spg032537 vs. ExPASy TrEMBL
Match: A0A6J1I3E0 (la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111470630 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.5e-70
Identity = 161/185 (87.03%), Postives = 168/185 (90.81%), Query Frame = 0


Query: 1   MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQ-PPQSAPGPPPP 60
           MAQHSSSS   S SQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DLQ PP SA GP PP
Sbjct: 1   MAQHSSSSSL-SPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQPPPHSAAGPAPP 60

Query: 61  PPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHH 120
           PPKQSPRILIPS PPPPPA+MHVYPPPPPGSPFHVPIQ+PVPVPTHVVS+QN HHYH HH
Sbjct: 61  PPKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQN-HHYHRHH 120

Query: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQ 180
           RHHHHSHHVPVLYHPHNPQYYADNGGFH+PDTVVQQ QKPQ E+DY APSR+KLTE+VS 
Sbjct: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLTEDVSL 180

Query: 181 KLLNQ 184
           KLLNQ
Sbjct: 181 KLLNQ 183

[Close]

BLAST of Spg032537 vs. ExPASy TrEMBL
Match: A0A6J1GLH8 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 9.4e-70
Identity = 160/185 (86.49%), Postives = 167/185 (90.27%), Query Frame = 0


Query: 1   MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDL-QPPQSAPGPPPP 60
           MAQHSSSS   S SQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DL QPP SA GP PP
Sbjct: 1   MAQHSSSSSL-SPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPP 60

Query: 61  PPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHH 120
           PPKQSPRILIPS PPPPPA+MHVYPPPPPGSPFHVPIQ+PVPVPTHVVS+QN HHYH HH
Sbjct: 61  PPKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQN-HHYHRHH 120

Query: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQ 180
           RHHHHSHHVPVLYHPHNPQYYADNGGFH+PDTVVQQ QKPQ E+DY APSR+KL E+VS 
Sbjct: 121 RHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVSL 180

Query: 181 KLLNQ 184
           KLLNQ
Sbjct: 181 KLLNQ 183

[Close]

BLAST of Spg032537 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-15
Identity = 79/198 (39.90%), Postives = 104/198 (52.53%), Query Frame = 0


Query: 4   HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQ 63
           HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q
Sbjct: 24  HSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTT----------------PPLPQ 83

Query: 64  SPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHHRHHHH 123
            PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  H+V +QNHH +H  H+HHHH
Sbjct: 84  PPRMIIP-PPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHH 143

Query: 124 SHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYG 183
           + H     VPV  H    Q     GG  EPD V ++              Q  +  +   
Sbjct: 144 NRHQNQQYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVS 200

[Close]

BLAST of Spg032537 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-15
Identity = 79/198 (39.90%), Postives = 104/198 (52.53%), Query Frame = 0


Query: 4   HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQ 63
           HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q
Sbjct: 24  HSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTT----------------PPLPQ 83

Query: 64  SPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHHYHPHHRHHHH 123
            PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  H+V +QNHH +H  H+HHHH
Sbjct: 84  PPRMIIP-PPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHH 143

Query: 124 SHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYG 183
           + H     VPV  H    Q     GG  EPD V ++              Q  +  +   
Sbjct: 144 NRHQNQQYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVS 200

The following BLAST results are available for this feature:

BLAST of Spg032537 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157471.1	3.1e-75	90.61	la-related protein 6B [Momordica charantia]	[more]
XP_038888029.1	9.9e-74	90.27	la-related protein 6B [Benincasa hispida]	[more]
XP_022969525.1	1.6e-71	84.26	la-related protein 6B-like [Cucurbita maxima]	[more]
XP_022928061.1	2.1e-71	84.77	la-related protein 6B-like [Cucurbita moschata]	[more]
KAG6588510.1	1.0e-70	82.27	La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg032537 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80567	9.2e-14	39.90	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]

BLAST of Spg032537 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DY71	1.5e-75	90.61	la-related protein 6B OS=Momordica charantia OX=3673 GN=LOC111024163 PE=4 SV=1	[more]
A0A6J1I059	7.6e-72	84.26	la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111468508 PE=4 SV=1	[more]
A0A6J1EJ80	1.0e-71	84.77	la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111434957 PE=4 SV...	[more]
A0A6J1I3E0	2.5e-70	87.03	la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111470630 PE=4 SV=1	[more]
A0A6J1GLH8	9.4e-70	86.49	la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV...	[more]

BLAST of Spg032537 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43970.1	6.5e-15	39.90	RNA-binding protein	[more]
AT2G43970.2	6.5e-15	39.90	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 82..99 score: 31.11 coord: 128..140 score: 36.92 coord: 59..75 score: 50.59 coord: 38..59 score: 40.91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032537.1	Spg032537.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding