Spg032509 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg032509
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold2: 29074864 .. 29077185 (-)
RNA-Seq ExpressionSpg032509
SyntenySpg032509
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAAGAAATGGAAATAAAGAAGGAAAGGAAAGAAAAGAACAGAAATCAGGAAAAAAGAATAAAGGTGAACAAAAAAAAAAAGAAAGAAAAGAAAGAAAATGGGGAAAAGCACTTTCGGTGCTTAAAAACCCACCACCGACTAGAATTCTTATCAGCCCATTTTCAGTTCATTTCTCCATCATTTTTCATCTAAAATTTCAGAGCACTTTAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTGATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGCTTTTCTTGAAAGTTAGTTCATTTGCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCTGATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCTTACAAGTTTCATGAAGAATTCGTGAGTCCAAAATGACTTGAAGTAGGTTTATTTTCAGGAGAAAGATAAAGGGCAGAAGAGAACCTCGAATCTGTGTTGTCTGTGTTCAGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCATTTCTTGAGGTACGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTATAGTACATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGGTGTGGTATTTAATCTGGAAAATCTGGAAAGTAGAATGTGGAGTGAGATTTCTTATTCAATTGTTTAGAAATTCATGAGCATGGAAAGACAAAACTAATTATGGTTCTGATGCTCGGTTTTGGTTGGTTGACAGGCGAAGAGGTAATAGGTTGGGTCTATAAACCAGGGAACTAGCTAAGACGGTGAGTGACAATGAATTTCGAAAGTTGTTTCCAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATAAATGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGATTTATAAATGAGCACGTGATTATTGAGTTTCAGAAAAATAGTTGAAACGACATCCTTTTAAGTCAAGCATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTCCACGAGCAAGCTGAATAAGCTTGAGTTTTACGAGAGATAACGATAAACAGGCATGTTCTAACATTTTCATGTGATTTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCAAGGCTATATGGTACCGTGTGCACACAAGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACATAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACCTGCGATGTTTTAAGAAAGCTTTTATCGTTGCACGTTTATGTTTAACGCCTTGGTTGACTGCTTTATGCGCTTAAAGTTTTATCACGTGTTCTGATTTTCGAATGTACAATTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATATTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATGGTAAATGTTTTGTAAGGATTGGACAATTTAGTCCTAGAGGTCGTGATTGTATAAACCCCATTTGTATATGTTTTTGGTTGTGAAATCTATATCAGGTTATTTTCCAAATCGAGTTATGTCAGGGCTGCACCTCGTGTATATTAGAAGGTTTTTCAGGGATTCCGCTGTGTTGTGTTTCATGTGGAATGTTTTATATCTAAGATTAGCATGTTTATCAGGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAACAGCGATCCCCATATGTCGCTACATATAG

mRNA sequence

ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGAGAAAGATAAAGGGCAGAAGAGAACCTCGAATCTGTGTTGTCTGTGTTCAGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCATTTCTTGAGGCGAAGAGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACATAGATCGGTCATAG

Coding sequence (CDS)

ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGAGAAAGATAAAGGGCAGAAGAGAACCTCGAATCTGTGTTGTCTGTGTTCAGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCATTTCTTGAGGCGAAGAGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACATAGATCGGTCATAG

Protein sequence

MRSLWFLKWKTEHRIFVQTRRISGVLWCFEHSGVYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEAKSYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSKTMGVLGGPHYIVGLVNVGCTGRALHNIDRS
Homology
[Close]
BLAST of Spg032509 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-16
Identity = 58/114 (50.88%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 34  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA---------------- 93
           V+K NQKLYL +   + R   L CLCSG FW NWL I FSFL+                 
Sbjct: 26  VHKSNQKLYLIRSGREPRI--LYCLCSGQFWMNWLRISFSFLQLWVLEVRISNLENLEMP 85

Query: 94  -------------KSYI-PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS 118
                        K+ I PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 86  RGNRLSLQTEEIDKTVIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Spg032509 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-16
Identity = 58/114 (50.88%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 34  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA---------------- 93
           V+K NQKLYL +   + R   L CLCSG FW NWL I FSFL+                 
Sbjct: 26  VHKSNQKLYLIRSGREPRI--LYCLCSGQFWMNWLRISFSFLQLWVLEVRISNLENLEMP 85

Query: 94  -------------KSYI-PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS 118
                        K+ I PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 86  RGNRLSLQTEEIDKTVIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Spg032509 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 56/131 (42.75%), Postives = 65/131 (49.62%), Query Frame = 0 

Query: 34  VYKLNQKLYLEKDKGQK------RTSNLCCLCSGHFWTNWLGIPF--SFLEAKSY----- 93
           V K NQKLY + + G+          N   L +G      + I +    L  + Y     
Sbjct: 131 VQKSNQKLYWDIESGKSGKWDVMPRGNRSSLQTGQLDKIEISIDYMTEILSLRLYGTVCP 190

Query: 94  ---IPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSKTMGVLGGPHYIVGLVNVGC 149
               PL TLSVLRDNDAVVS G+                 K  GV GGPHYIVGLVNVGC
Sbjct: 191 QVIFPLSTLSVLRDNDAVVSVGQTHY-------------DKDDGVPGGPHYIVGLVNVGC 248

[Close]
BLAST of Spg032509 vs. NCBI nr
Match: KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 80  YIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS 118
           Y+ LLTL+VLRDNDA+VSAGR PLRQR+WECWA PTTS
Sbjct: 32  YVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Spg032509 vs. NCBI nr
Match: KAA0040296.1 (hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 83  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS 118
           L TLSVLR+NDA VSAGR PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

[Close]
BLAST of Spg032509 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.8e-17
Identity = 58/114 (50.88%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 34  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA---------------- 93
           V+K NQKLYL +   + R   L CLCSG FW NWL I FSFL+                 
Sbjct: 26  VHKSNQKLYLIRSGREPRI--LYCLCSGQFWMNWLRISFSFLQLWVLEVRISNLENLEMP 85

Query: 94  -------------KSYI-PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS 118
                        K+ I PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 86  RGNRLSLQTEEIDKTVIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Spg032509 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.8e-17
Identity = 58/114 (50.88%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 34  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA---------------- 93
           V+K NQKLYL +   + R   L CLCSG FW NWL I FSFL+                 
Sbjct: 26  VHKSNQKLYLIRSGREPRI--LYCLCSGQFWMNWLRISFSFLQLWVLEVRISNLENLEMP 85

Query: 94  -------------KSYI-PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS 118
                        K+ I PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTS
Sbjct: 86  RGNRLSLQTEEIDKTVIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Spg032509 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 56/131 (42.75%), Postives = 65/131 (49.62%), Query Frame = 0 

Query: 34  VYKLNQKLYLEKDKGQK------RTSNLCCLCSGHFWTNWLGIPF--SFLEAKSY----- 93
           V K NQKLY + + G+          N   L +G      + I +    L  + Y     
Sbjct: 131 VQKSNQKLYWDIESGKSGKWDVMPRGNRSSLQTGQLDKIEISIDYMTEILSLRLYGTVCP 190

Query: 94  ---IPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSKTMGVLGGPHYIVGLVNVGC 149
               PL TLSVLRDNDAVVS G+                 K  GV GGPHYIVGLVNVGC
Sbjct: 191 QVIFPLSTLSVLRDNDAVVSVGQTHY-------------DKDDGVPGGPHYIVGLVNVGC 248

[Close]
BLAST of Spg032509 vs. ExPASy TrEMBL
Match: A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 80  YIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS 118
           Y+ LLTL+VLRDNDA+VSAGR PLRQR+WECWA PTTS
Sbjct: 32  YVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Spg032509 vs. ExPASy TrEMBL
Match: A0A5A7TDY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00310 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 83  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS 118
           L TLSVLR+NDA VSAGR PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

The following BLAST results are available for this feature:
BLAST of Spg032509 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037581.11.4e-1650.88reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.11.4e-1650.88reverse transcriptase [Cucumis melo var. makuwa][more]
TYK08801.11.0e-1142.75hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
KAA0033241.12.2e-0981.58hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041... [more]
KAA0040296.13.8e-0682.86hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa][more]
BLAST of Spg032509 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg032509 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTP36.8e-1750.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M66.8e-1750.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3CAC65.0e-1242.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SUV21.0e-0981.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDY31.8e-0682.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg032509 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg032509.1Spg032509.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity