Spg032422 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg032422
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationscaffold2: 30357512 .. 30359211 (-)
RNA-Seq ExpressionSpg032422
SyntenySpg032422
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACTGGTCAATGCCACTTTGTCGCTGGAAGCCTTAGCCTATGATGTTGGTTGCGCATCATTCAAACAAGCTTGGGAGGTCATTGAAAAGCATTACTCTTCGAACTCAAGAACCAACATTGTCAATCTAAAGTTAGATCTTCAATCAATAACCAAGAAGCCAAGTGAGTCAATTGATGATTATGTTAAATGAATCAAAAAGCTCAAGGATAAATTAGCTAATGTTTATATTATTGTGGATGAAAATGATATTCTTATCAATGTCCTAAATGGCTTACTCTGTGTTTTTAACACTTTTCGCACATCTATGAGAACTTGACTACAATTGATTACATTCGATGAGCTACACATTCTTTTGAAAGCAGAGGAAGCTTCTATTGAGAAACAATCAAAGCAAGTGAAGCAGTGTACGACACTCATGCGGAAGCGATTTGGATCGAAAACACTCTAATTTCATTAATTTTACAAAGGAAAAACATGCATTTCAATGGCTGAAAACAGAGTATCAAGTTTACCAACCTTTTGAGTCGAAATTCAGCTACACCGATTGGTTTCTTTGATCACAAACGGGTTGTAGATGACCACGAGTGTCTTCCCCGCTATCCTCCGACCTTAGAACGGCTTGTGGGAGCAAAAAATGTGATTAATTTTGGGAGAGAAAGGTATTTGAGAGAGAGTTGTTTTTCAGCTAAAAACCAAGAAGAAGAACCAACAAAAACTACTTAATCTTCTGATTTTTAATCACCATTTCATACAAATCTCTCTTGGAGATTTTGACAGCAAGAAATAGGAAGGGTTAGGTGTATGGGATAGATGGCTAACAATGTGATTTTGCCTCTTGAATTAAGGCAAAAGAAAATTCAAAATTGCAATTGAATTTTTAGATTTTTTTCCATTAATTTTAATACACAAAATTAATTCAAAATTAATTTTCAATAAAATTAATCTTGGATAATTAATTAAAATTTTTAAATTAATTACAATTTATTTAATTTAATATCAAATACTAAATTAAATAATTACAACAAACCCGACACCAATCTCGACCTCTCATAACAATATCTTGAATATGAATCCCTATTCATATATTCAATATTTAAATCACATTTAAATATATACAACTCTCTCTATAGTTTAAACCATAATTAAACCATAATACGTTAAGAATATTGTATATAATTAACAATAACTCCCTAAATTGAATTTAAACGCTTCAAATTCTTTCATCACACTGTTCTAAGGTTTAGTCTGTATGAGCTAGCAGGGGGACCAAATAGACCTACAGATCATGGGCTCCAACGATCTGAGATTAACCGGCTAAACTCATTAACCTAGTTAACCAACATTCATTAACTACCGGGACACTCCACTATAGCCCAATAGTTCCACTCCTCTCACTGTAGATATATTTTTTGTCCACCCAATATAACTATGATTAGTAAGTTGATCCTTCACAGGTCGTTCGTAACTACAGCTAGGTCAAATGTCCGTTTTATCCCTGAAGTTACCTCTTGTTCCTTAAATCCCACTGATCCTCTAATGAACAATTGGATGGGTAAAGCTGAAACGGGTCCAATAAAGAATGGGTCAACACCGATTAATGCAATAATCTCAATTGGAACTCAAGAAGAAACTCACCCAATGAAGCAATTCCTTATGCTGGGCAGCAACTTGAATAATGGTCGATACTCGACTTGA

mRNA sequence

ATGACACTGGTCAATGCCACTTTGTCGCTGGAAGCCTTAGCCTATGATGTTGGTTGCGCATCATTCAAACAAGCTTGGGAGGTCATTGAAAAGCATTACTCTTCGAACTCAAGAACCAACATTGTCAATCTAAAGTTAGATCTTCAATCAATAACCAAGAAGCCAACTACACCGATTGGTTTCTTTGATCACAAACGGGTTGTAGATGACCACGAGTGTCTTCCCCGCTATCCTCCGACCTTAGAACGGCTTGTGGGAGCAAAAAATGTGATTAATTTTGGGAGAGAAAGGTCGTTCGTAACTACAGCTAGGTCAAATGTCCGTTTTATCCCTGAAGTTACCTCTTGTTCCTTAAATCCCACTGATCCTCTAATGAACAATTGGATGGGTAAAGCTGAAACGGGTCCAATAAAGAATGGGTCAACACCGATTAATGCAATAATCTCAATTGGAACTCAAGAAGAAACTCACCCAATGAAGCAATTCCTTATGCTGGGCAGCAACTTGAATAATGGTCGATACTCGACTTGA

Coding sequence (CDS)

ATGACACTGGTCAATGCCACTTTGTCGCTGGAAGCCTTAGCCTATGATGTTGGTTGCGCATCATTCAAACAAGCTTGGGAGGTCATTGAAAAGCATTACTCTTCGAACTCAAGAACCAACATTGTCAATCTAAAGTTAGATCTTCAATCAATAACCAAGAAGCCAACTACACCGATTGGTTTCTTTGATCACAAACGGGTTGTAGATGACCACGAGTGTCTTCCCCGCTATCCTCCGACCTTAGAACGGCTTGTGGGAGCAAAAAATGTGATTAATTTTGGGAGAGAAAGGTCGTTCGTAACTACAGCTAGGTCAAATGTCCGTTTTATCCCTGAAGTTACCTCTTGTTCCTTAAATCCCACTGATCCTCTAATGAACAATTGGATGGGTAAAGCTGAAACGGGTCCAATAAAGAATGGGTCAACACCGATTAATGCAATAATCTCAATTGGAACTCAAGAAGAAACTCACCCAATGAAGCAATTCCTTATGCTGGGCAGCAACTTGAATAATGGTCGATACTCGACTTGA

Protein sequence

MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFFDHKRVVDDHECLPRYPPTLERLVGAKNVINFGRERSFVTTARSNVRFIPEVTSCSLNPTDPLMNNWMGKAETGPIKNGSTPINAIISIGTQEETHPMKQFLMLGSNLNNGRYST
Homology
[Close]
BLAST of Spg032422 vs. NCBI nr
Match: TYK17989.1 (uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-14
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 1   MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIG 60
           M L+NATLS+EAL Y VGC S  Q W+ +E+HYSSN+RTNIVNLK DLQ I+KKP  PIG
Sbjct: 107 MFLINATLSVEALTYVVGCKSSSQVWKTLERHYSSNTRTNIVNLKSDLQQISKKPDEPIG 166

Query: 61  FFDHK 66
            +  K
Sbjct: 167 LYIKK 171

[Close]
BLAST of Spg032422 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-12
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1   MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK 55
           MTL+NATLS EALAY V   + KQ WEV+EKHYSSNSRTN+VNLK DLQSI KK
Sbjct: 121 MTLINATLSAEALAYVVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKK 174

[Close]
BLAST of Spg032422 vs. NCBI nr
Match: XP_022158689.1 (uncharacterized protein LOC111025150 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-11
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 1   MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIG 60
           MTL+NA LS  ALAY VGC S +Q W+ + KHYSS+SRTN+VNLK DLQSI+KKP   I 
Sbjct: 94  MTLLNAXLSSSALAYVVGCDSSQQVWQTLVKHYSSSSRTNVVNLKSDLQSISKKPGXSID 153

Query: 61  FF 63
            +
Sbjct: 154 XY 155

[Close]
BLAST of Spg032422 vs. NCBI nr
Match: XP_022159298.1 (uncharacterized protein LOC111025709 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-10
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIG 60
           MTL+NATLS  ALAY VGC S +Q W+ + K+YSS+SRTN+VNLK +LQSI+KKP   I 
Sbjct: 59  MTLLNATLSPSALAYMVGCDSSQQVWQTLVKYYSSSSRTNVVNLKSNLQSISKKPGESID 118

Query: 61  FF 63
            +
Sbjct: 119 LY 120

[Close]
BLAST of Spg032422 vs. NCBI nr
Match: XP_022157455.1 (uncharacterized protein LOC111024149 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-10
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 1  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK 55
          MTL+NATLS  A AY VG  S K+ W+ +EKHYSS+SRTN+VNLK DLQSI+KK
Sbjct: 1  MTLINATLSPSAPAYVVGSTSSKEIWDTLEKHYSSSSRTNVVNLKSDLQSISKK 54

[Close]
BLAST of Spg032422 vs. ExPASy TrEMBL
Match: A0A5D3D3T6 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002980 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 1   MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIG 60
           M L+NATLS+EAL Y VGC S  Q W+ +E+HYSSN+RTNIVNLK DLQ I+KKP  PIG
Sbjct: 107 MFLINATLSVEALTYVVGCKSSSQVWKTLERHYSSNTRTNIVNLKSDLQQISKKPDEPIG 166

Query: 61  FFDHK 66
            +  K
Sbjct: 167 LYIKK 171

[Close]
BLAST of Spg032422 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1   MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK 55
           MTL+NATLS EALAY V   + KQ WEV+EKHYSSNSRTN+VNLK DLQSI KK
Sbjct: 121 MTLINATLSAEALAYVVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKK 174

[Close]
BLAST of Spg032422 vs. ExPASy TrEMBL
Match: A0A6J1E049 (uncharacterized protein LOC111025150 OS=Momordica charantia OX=3673 GN=LOC111025150 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 1   MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIG 60
           MTL+NA LS  ALAY VGC S +Q W+ + KHYSS+SRTN+VNLK DLQSI+KKP   I 
Sbjct: 94  MTLLNAXLSSSALAYVVGCDSSQQVWQTLVKHYSSSSRTNVVNLKSDLQSISKKPGXSID 153

Query: 61  FF 63
            +
Sbjct: 154 XY 155

[Close]
BLAST of Spg032422 vs. ExPASy TrEMBL
Match: A0A6J1DYF1 (uncharacterized protein LOC111025709 OS=Momordica charantia OX=3673 GN=LOC111025709 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.0e-11
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIG 60
           MTL+NATLS  ALAY VGC S +Q W+ + K+YSS+SRTN+VNLK +LQSI+KKP   I 
Sbjct: 59  MTLLNATLSPSALAYMVGCDSSQQVWQTLVKYYSSSSRTNVVNLKSNLQSISKKPGESID 118

Query: 61  FF 63
            +
Sbjct: 119 LY 120

[Close]
BLAST of Spg032422 vs. ExPASy TrEMBL
Match: A0A6J1DT57 (uncharacterized protein LOC111024149 OS=Momordica charantia OX=3673 GN=LOC111024149 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 1  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK 55
          MTL+NATLS  A AY VG  S K+ W+ +EKHYSS+SRTN+VNLK DLQSI+KK
Sbjct: 1  MTLINATLSPSAPAYVVGSTSSKEIWDTLEKHYSSSSRTNVVNLKSDLQSISKK 54

The following BLAST results are available for this feature:
BLAST of Spg032422 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK17989.13.5e-1464.62uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa][more]
XP_022150845.13.2e-1275.93uncharacterized protein LOC111018892 [Momordica charantia][more]
XP_022158689.12.7e-1162.90uncharacterized protein LOC111025150 [Momordica charantia][more]
XP_022159298.11.0e-1061.29uncharacterized protein LOC111025709 [Momordica charantia][more]
XP_022157455.14.0e-1068.52uncharacterized protein LOC111024149 [Momordica charantia][more]
BLAST of Spg032422 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg032422 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D3T61.7e-1464.62Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A6J1D9L61.6e-1275.93uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1E0491.3e-1162.90uncharacterized protein LOC111025150 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DYF15.0e-1161.29uncharacterized protein LOC111025709 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DT571.9e-1068.52uncharacterized protein LOC111024149 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of Spg032422 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg032422.1Spg032422.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding