Spg032301 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032301
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease H
Location	scaffold2: 34039724 .. 34043787 (+)
RNA-Seq Expression	Spg032301
Synteny	Spg032301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCTCAATCCGAAGAGTCTGAAGCTTTTAAAAGTTATTCAAGCTCATTGGAACGTCAGCTCCAAGCATTTCAAAGGGCAAGCGAACAATTGTCACTAGAGAGAGGACAACTAGAGGAAAAATACTCCTCATTAAGGGGAGATTATGCCATTATGAGAGAAGACATGCAAATAATTCTTGGGAAAGTAAATCAAACCATGAACACTATCAAGATCATGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTGCGAGAGAATACATCACCTATGGCCTCTAATGCGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGGTACTTTGGTCACTTTCATTAATGTTCCCTGTTCCTTGTTTTCCAATTCCCAATTGTTTATTTTGTAGATATATTCATTTTTTTTTCTCCCTCAATAATAAAATTTCATTCATTCATGCATCTCATACTGTTCTTTCTTCTATTCCTTTTGTACTTACTCTGAAACTTTTTTTAAAAAAATAAAAATAAAAACAAAACAGTAAAATAGCTCGCTCAACAAGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCAGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATCATTGCCACTTTAGAGAAGGGCAAAATGGTGGCAGATACGACTACACCAGACACTCCAATTGGAAACCCTCAAGCCGGCCTACCATTTCCACCCAGTTTCGCTTCACATGTTCGTACGACAGCAGAAGCGTCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCATCATTTAAAGAAGGCCAAATCCCCCAAATACCCATGGCTAGCCAGGCTGGTGCTTCTTATTTCAAGCTAGAGTTTTCAAAAATACCTTTTGCGGTCCCTAACTTGGATGACCCAGAAGTAAAGAAGGAGTTAGTCGCGCCCTCTAATGAAAAACTTGAAGTTTTAGAGGAAAGGTTGAGGGCGGTTGAGGGCACTAGTGTTTTTCGGAACATGGATGCCACTCAATTATGCTTGGTCCCAGACGTTGTAATCCCACCGAAATTCAAATTGCCGGAATTTGAAAAATATGACGGGACGACATGCCCTAAAAGTCACATTGTTATGTATTGTAGGAAGATGGCAACGCACGTTCATAATGATAAGCTGCTTATACATTGCTTTCAGGACAGCTTGAAAGGTCCAGCCGCCCGTTGGTATATGCAGTTGGATAGTTCACATGTTGTCACGTGGAAGAACTTGGCTGATTCCTTCCTCAAACAGTACAAGCACAATATTGATTTGGCTCCCGACCGACTGGACTTACAGAGGATGGAAAAGAAGAGTACTGAAGACTTTAAAGATTATGCTCAAAGGTGGCGAGATACGGCAGCTCAAGTCCAACCCCCTTTAACGGATAAGGAGCTTTTTGCCATGTTCATCAATACCTTAAGGTCCCCATTCTATGAACATATGGTTGGAAGTGCGTCAACCAATTTCTCTGATATCATGACAATTGGAGAAAGAATTGAGTACGGGATCAAACATGGTAGAATAGCCAAAACCGTTGAATCCTCGGGCACAAAGAAGGGCAATACTTCAAAGAAGAAGGAGGGAGAAGTACAGATGATAGGGAAAGTGGATAAGTCCCATCGACAAATCCACCAACCCATGGCACAATATCCTTCGAATTATTTACCTACATACGGATACTATCCACACCAGGTGAATAATGCTTCAGCGCAGTACTCCCCATTTTATGGCCAAAATACCTGACCCCAAATGAATCAGAATTTTCAATCTCATAGACAACAACAAACAATCACTCCAGGTCAGCAAAATAATCGAGCACCTTATAAGCAAGCCCAATTTGATCCGATTCCGATGACATATACTGAGCTCTTGCCTCAGTTAATTCAGAACCATCAGTTGGCACCCAAGCCTGTTGCTCCACTGCAACCCCCTTATCCAAGATGGTATGACCCTAATGCAAGGTGTGATTACCATGCAGGTGCTGTTGGGCATTCTATAGAAAATTGCACTGCTTTGAAGTATAGAGTGCAAGAGCTCATTAAGGCCGGATGGTTAAATTTCAAAAAAGAGGAGGGACCCAATGTTGATAATAATCTTTTACCAAATCATCAGGTGAATGCAATAGATTAATGTCAGGATATTATCAAGAAGATAGATGTTGCAGAGATCATGACTCCTAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGATATGTATCAATAGAGTATACACACAAGGACCTTGTTCAAGAAGGATTCGATGATAATTTGACTTGCCTATTTCATGCTGGGGCAAAGGGGCATTCTTTGGAACAATGTCGTCATTTTCATAAGAGGGTCCAAGAACTGATGGACTCAAAATTTCTTGTGGTCACCCAAGCCCATCACCGGGAGGATGAAATAGACGTTGTGGAAGAATTGCTGCCTAGAGAAAGTTTGAATTCATCTTTCAAACTGAAGCCACTCACGATCTATTACCGTGAGAAGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGGCTCCTTTCAAGTACAAGAGCTCTAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAACTCAGAAACGCCACCACTTCCAGTTGACAACATTTCTGGAACGGGAGGCGTAACACGGAGTGGGAAATGCTACACTCCAGATCAGTTATTGAAGTGCTCAAAGAATACAATAGAAGAGAAAAATGAGAAAGTTGAAGGTAATACTGATAGCAATGTCAAGCCTAAAGAAACAACAGTGATGAAGAAATCAAGGGGCAAACAGACTGTGTCCGAAGAAGAAACTCATGAGTTTCTAAAGTTGGTTAAGCAAAGTGAATACAAAGTAGTGGAACAGCTAGCTCAGACGCCTGCTAAGATTTCCATATTATCTTTGTTGTTATCCTCTGATTCACATAGAGATACGATATTGGAAGCTTTGAATCAAGCATATGTTTCCAAGGACATCACTTCAGATGGTCCAGATAATATCGTGGGGAATATAACTGCTCACAACACCATAACTTTCACTGATGATGAGATACCACCCGAAGGCACAGGACACACGAAGGCACTTCATATTTCAGTCAAGTGCAAGAACTTTTTAGTAGCAAAAGTCCTGGTGGATAATGGGTCTTCTTTGAACATAATGCCAAAATCAACGCTCGAAAGATTGCCAGTGGATATGTCCCATATGAGGCCAAGTACCGTAGTAGTAAGGGCCTTCGATGGGGCACGCAGTCAAGTGGTTGGTGACATTGAGATTCCAATACAAATCGGCCCATGCACATTTAACATAACCTTCCAAGTTATGGATATTCCCTCTGCTTACAGTTTCCTATTAGGACGACCTTGGATACATTCTGCAGGAGCTGTCCCATCATCGCTGCACCAGAAACTCAAATTTTCAATTGGAAGGAGCCTAGTAATTGTATCTGGTCAAGAGGATATTTTGGTTTCTAGGCCAGCTTCAATGCCATATATTGATGCAGCAGAGGAAGCTTTTGAGTCATCATTTCAAACATTTGAAGTAGCAAGTGCTACGACTCTATATGGGGAAAGCAAGAAATCTAAATCCCAATCTTCAGTCATGACGTTCAAAGAAAGCAATAGTCGTTTAGATGATGTTTTAAGTCTATCGAAAAATAAGAAAAGATTTGGGCTTGGATATAAGCCGAATAAAGCAGACATGATCAGGGTACAGAAGCGAGAAAAAGAGAGACGTTTGGCCAGATTTGAAAGTCGTGAACCAGAATATGGAGAAAAAGTCATTCCTCATCTCTACCACTCGTTTGAAAGTGCTGGTATAATTCGTCCTGGTGATTTTGCAGTTGTAGTAGTAACTAAAGAGGAAGAATTGGGTCCATGGATTTACCCGTGCCCAGAAAACTTCGAGCTCAACAATTGGAGTACTATTGAATTACCGTCATTCGCTGTTAAGATGTCAAAGTAA

mRNA sequence

ATGCAAGCTCAATCCGAAGAGTCTGAAGCTTTTAAAAGTTATTCAAGCTCATTGGAACGTCAGCTCCAAGCATTTCAAAGGGCAAGCGAACAATTGTCACTAGAGAGAGGACAACTAGAGGAAAAATACTCCTCATTAAGGGGAGATTATGCCATTATGAGAGAAGACATGCAAATAATTCTTGGGAAAGTAAATCAAACCATGAACACTATCAAGATCATGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTGCGAGAGAATACATCACCTATGGCCTCTAATGCGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGGCGTAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCAGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATCATTGCCACTTTAGAGAAGGGCAAAATGGTGGCAGATACGACTACACCAGACACTCCAATTGGAAACCCTCAAGCCGGCCTACCATTTCCACCCAGTTTCGCTTCACATGTTCGTACGACAGCAGAAGCGTCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCATCATTTAAAGAAGGCCAAATCCCCCAAATACCCATGGCTAGCCAGGCTGAGATCATGACTCCTAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGATATGTATCAATAGAGTATACACACAAGGACCTTGTTCAAGAAGGATTCGATGATAATTTGACTTGCCTATTTCATGCTGGGGCAAAGGGGCATTCTTTGGAACAATGTCGTCATTTTCATAAGAGGGTCCAAGAACTGATGGACTCAAAATTTCTTGTGGTCACCCAAGCCCATCACCGGGAGGATGAAATAGACGTTGTGGAAGAATTGCTGCCTAGAGAAAGTTTGAATTCATCTTTCAAACTGAAGCCACTCACGATCTATTACCGTGAGAAGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGGCTCCTTTCAAGTACAAGAGCTCTAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAACTCAGAAACGCCACCACTTCCAGTTGACAACATTTCTGGAACGGGAGGCGTAACACGGAGTGGGAAATGCTACACTCCAGATCAGTTATTGAATCGTGAACCAGAATATGGAGAAAAAGTCATTCCTCATCTCTACCACTCGTTTGAAAGTGCTGGTATAATTCGTCCTGGTGATTTTGCAGTTGTAGTAGTAACTAAAGAGGAAGAATTGGGTCCATGGATTTACCCGTGCCCAGAAAACTTCGAGCTCAACAATTGGAGTACTATTGAATTACCGTCATTCGCTGTTAAGATGTCAAAGTAA

Coding sequence (CDS)

ATGCAAGCTCAATCCGAAGAGTCTGAAGCTTTTAAAAGTTATTCAAGCTCATTGGAACGTCAGCTCCAAGCATTTCAAAGGGCAAGCGAACAATTGTCACTAGAGAGAGGACAACTAGAGGAAAAATACTCCTCATTAAGGGGAGATTATGCCATTATGAGAGAAGACATGCAAATAATTCTTGGGAAAGTAAATCAAACCATGAACACTATCAAGATCATGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTGCGAGAGAATACATCACCTATGGCCTCTAATGCGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGGCGTAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCAGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATCATTGCCACTTTAGAGAAGGGCAAAATGGTGGCAGATACGACTACACCAGACACTCCAATTGGAAACCCTCAAGCCGGCCTACCATTTCCACCCAGTTTCGCTTCACATGTTCGTACGACAGCAGAAGCGTCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCATCATTTAAAGAAGGCCAAATCCCCCAAATACCCATGGCTAGCCAGGCTGAGATCATGACTCCTAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGATATGTATCAATAGAGTATACACACAAGGACCTTGTTCAAGAAGGATTCGATGATAATTTGACTTGCCTATTTCATGCTGGGGCAAAGGGGCATTCTTTGGAACAATGTCGTCATTTTCATAAGAGGGTCCAAGAACTGATGGACTCAAAATTTCTTGTGGTCACCCAAGCCCATCACCGGGAGGATGAAATAGACGTTGTGGAAGAATTGCTGCCTAGAGAAAGTTTGAATTCATCTTTCAAACTGAAGCCACTCACGATCTATTACCGTGAGAAGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGGCTCCTTTCAAGTACAAGAGCTCTAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAACTCAGAAACGCCACCACTTCCAGTTGACAACATTTCTGGAACGGGAGGCGTAACACGGAGTGGGAAATGCTACACTCCAGATCAGTTATTGAATCGTGAACCAGAATATGGAGAAAAAGTCATTCCTCATCTCTACCACTCGTTTGAAAGTGCTGGTATAATTCGTCCTGGTGATTTTGCAGTTGTAGTAGTAACTAAAGAGGAAGAATTGGGTCCATGGATTTACCCGTGCCCAGAAAACTTCGAGCTCAACAATTGGAGTACTATTGAATTACCGTCATTCGCTGTTAAGATGTCAAAGTAA

Protein sequence

MQAQSEESEAFKSYSSSLERQLQAFQRASEQLSLERGQLEEKYSSLRGDYAIMREDMQIILGKVNQTMNTIKIMARRARGFAEWARDLRENTSPMASNAEELFEFLGMIRRDLGRRTRIMEEKGEQEKTKQDIEEIREKVDAIIATLEKGKMVADTTTPDTPIGNPQAGLPFPPSFASHVRTTAEASMPQHTTYNPLYDIPVGQYPFPSFKEGQIPQIPMASQAEIMTPKEKLFEILLVNGYVSIEYTHKDLVQEGFDDNLTCLFHAGAKGHSLEQCRHFHKRVQELMDSKFLVVTQAHHREDEIDVVEELLPRESLNSSFKLKPLTIYYREKTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTINSETPPLPVDNISGTGGVTRSGKCYTPDQLLNREPEYGEKVIPHLYHSFESAGIIRPGDFAVVVVTKEEELGPWIYPCPENFELNNWSTIELPSFAVKMSK

Homology

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BLAST of Spg032301 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 201.1 bits (510), Expect = 2.2e-47
Identity = 106/208 (50.96%), Postives = 142/208 (68.27%), Query Frame = 0


Query: 202 VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYTHKDLVQE 261
           V + P P+ +  QI  I        +  A+I TP  +LFEILL +GYVS+EY   +L  +
Sbjct: 430 VSKNPLPNHQNVQINAIECQEIESKSKVADIRTPMVELFEILLGSGYVSVEYLCPNLKYK 489

Query: 262 GFDDNLTCLFHAGAKGHSLEQCRHFHKRVQELMDSKFLVVTQAHHREDEIDVVEELLPRE 321
           G+D++LTC FHAGAKGHSLEQC  F  +VQEL+DSK L V  +H ++  I++VE++   E
Sbjct: 490 GYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKG-INIVEDVSVAE 549

Query: 322 SLNSSFKLKPLTIYYREKTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTINSE-- 381
             + + K K LTI+Y EK    +   K ITI VPAPF+YKSSKAVPW Y+ KVT+  +  
Sbjct: 550 GSSDALKPKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVS 609

Query: 382 TPPLPVDNISGTGGVTRSGKCYTPDQLL 400
           +PPLP+DNI+G GG+TR+G+CYTPD LL
Sbjct: 610 SPPLPIDNITGVGGLTRTGRCYTPDSLL 636

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BLAST of Spg032301 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 5.4e-46
Identity = 113/218 (51.83%), Postives = 143/218 (65.60%), Query Frame = 0


Query: 202 VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYTHKDLVQE 261
           V   P P+    QI  I        +  A+I TP E+LFEILL +GYVS+EY   +L  +
Sbjct: 365 VSNNPLPNHXNVQINAIECQEIESKSKVADITTPMEELFEILLGSGYVSVEYLCPNLKYK 424

Query: 262 GFDDNLTCLFHAGAKGHSLEQCRHFHKRVQELMDSKFLVVTQAHHREDEIDVVEELLPRE 321
           G+D++LTC FHAGAKGH+LEQC  F   VQEL+DSK L V  +H ++  I+VVE++   E
Sbjct: 425 GYDESLTCPFHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKG-INVVEDVSVAE 484

Query: 322 ---SLNSSFKLKP--LTIYYREKTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI 381
              +  SS  LKP  LTI+Y EK    +   K ITI VPAPF+YKSSKAVPW YE KVT+
Sbjct: 485 GSIAEGSSDALKPKRLTIFYSEKPDAPNCSRKPITITVPAPFEYKSSKAVPWKYECKVTV 544

Query: 382 NSE--TPPLPVDNISGTGGVTRSGKCYTPDQLLNREPE 405
             +  +PPLPVDNI+G GG+T +G+CYTPD LL R  E
Sbjct: 545 GQDVSSPPLPVDNITGVGGLTXTGRCYTPDSLLKRVSE 581

[Close]

BLAST of Spg032301 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 5.9e-45
Identity = 103/204 (50.49%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 206 PFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYTHKDLVQEGFDD 265
           P P+ K  QI  +        +  +EI TP + LFEIL  +GY+S+E+   D+  E +D+
Sbjct: 536 PLPNHKNVQINAVECQGIESRSKVSEITTPMQXLFEILWXHGYMSMEHLCPDIRCERYDE 595

Query: 266 NLTCLFHAGAKGHSLEQCRHFHKRVQELMDSKFLVVTQAHHREDEIDVVEELLPRESLNS 325
           NLTC +HAGA+GH LEQC  F ++VQEL+D K L VTQ+ H+E  IDVVE +   ES ++
Sbjct: 596 NLTCPYHAGARGHPLEQCSCFKEKVQELLDLKILTVTQS-HQEQRIDVVEYVSTAESSSA 655

Query: 326 SFKLKPLTIYYREK--TTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI--NSETPPL 385
           ++K KPLT+ YREK    ++  + ITIQVPAPF+Y SSKAVPW YE KVT+   +++  L
Sbjct: 656 AYKPKPLTVLYREKPEVPSNSWRPITIQVPAPFEYSSSKAVPWKYECKVTVGQKAQSSSL 715

Query: 386 PVDNISGTGGVTRSGKCYTPDQLL 400
           PVDNI+  GG+TR+G+CYTP+ LL
Sbjct: 716 PVDNITRGGGMTRTGRCYTPESLL 738

[Close]

BLAST of Spg032301 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 6.0e-13
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 121 EEKGEQEKTKQDIEEIREKVDAIIATLEKGKMVADTTTPDTPIGNPQAGLPFPPSF---A 180
           + K EQEKT++DIEE+REK+DAI+  LEKGK +A+T+ P      PQ    F PSF    
Sbjct: 4   DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAETSNPIHEPPTPQFPPGFEPSFRPAG 63

Query: 181 SHVRTTAEASMPQHTTYNPLYDIPVGQYPFP 209
              R   E  M Q+TTYNPLYDIP GQ+P P
Sbjct: 64  PSFRPMTEGFMSQYTTYNPLYDIPAGQFPPP 94

HSP 2 Score: 191.8 bits (486), Expect = 1.3e-44
Identity = 100/185 (54.05%), Postives = 128/185 (69.19%), Query Frame = 0


Query: 224 AEIMTPKEKLFEILLVNGYVSIEYTHKDLVQEGFDDNLTCLFHAGAKGHSLEQCRHFHKR 283
           A+I TP  +LFEILL +GY+S+EY       +G+D++LTC FH GAKGHSLEQC  F  +
Sbjct: 498 ABITTPMXELFEILLGSGYISVEYLCPK--YKGYDESLTCXFHXGAKGHSLEQCNXFRMK 557

Query: 284 VQELMDSKFLVVTQAHHREDEIDVVEELLPRESLNSSFKLKPLTIYYREK--TTTHDPKS 343
           VQEL+DSK L    +H ++   +VVE++L  E  + S K KPLTI+YREK    +   K 
Sbjct: 558 VQELLDSKILTXANSHXKK-XTNVVEDILVAEGSSDSLKPKPLTIFYREKPDAPSCSRKP 617

Query: 344 ITIQVPAPFKYKSSKAVPWSYEYKVTINSE--TPPLPVDNISGTGGVTRSGKCYTPDQLL 403
             I VP PF+YKSSKAVPW YE KVT+  +  +P LPVDNI+G GG+TR+G+CYTPD LL
Sbjct: 618 XXITVPXPFEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLL 677

Query: 404 NREPE 405
            R  E
Sbjct: 678 KRVNE 679

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BLAST of Spg032301 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-38
Identity = 91/165 (55.15%), Postives = 118/165 (71.52%), Query Frame = 0


Query: 224 AEIMTPKEKLFEILLVNGYVSIEYTHKDLVQEGFDDNLTCLFHAGAKGHSLEQCRHFHKR 283
           A+I TPKE+LFEILL +GYVS+EY   +L  + +D++LTC FHAGAKGHSLEQC  F  +
Sbjct: 451 ADIRTPKEELFEILLGSGYVSVEYLCPNLKYKEYDESLTCPFHAGAKGHSLEQCNSFRMK 510

Query: 284 VQELMDSKFLVVTQAHHREDEIDVVEELLPRESLNSSFKLKPLTIYYREK--TTTHDPKS 343
           VQEL+DSK L V  +H ++  I+VVE++   E  + + K K LTI+Y EK    +   K 
Sbjct: 511 VQELLDSKILTVANSHQKKG-INVVEDVSVAEGSSDALKPKRLTIFYSEKPDAPSCSQKP 570

Query: 344 ITIQVPAPFKYKSSKAVPWSYEYKVTINSE--TPPLPVDNISGTG 385
           ITI VPAPF+YKSSKAVPW Y+ KVT+  +  +PPLPVDNI+  G
Sbjct: 571 ITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSPPLPVDNITEVG 614

[Close]

BLAST of Spg032301 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-47
Identity = 106/208 (50.96%), Postives = 142/208 (68.27%), Query Frame = 0


Query: 202 VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYTHKDLVQE 261
           V + P P+ +  QI  I        +  A+I TP  +LFEILL +GYVS+EY   +L  +
Sbjct: 430 VSKNPLPNHQNVQINAIECQEIESKSKVADIRTPMVELFEILLGSGYVSVEYLCPNLKYK 489

Query: 262 GFDDNLTCLFHAGAKGHSLEQCRHFHKRVQELMDSKFLVVTQAHHREDEIDVVEELLPRE 321
           G+D++LTC FHAGAKGHSLEQC  F  +VQEL+DSK L V  +H ++  I++VE++   E
Sbjct: 490 GYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKG-INIVEDVSVAE 549

Query: 322 SLNSSFKLKPLTIYYREKTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTINSE-- 381
             + + K K LTI+Y EK    +   K ITI VPAPF+YKSSKAVPW Y+ KVT+  +  
Sbjct: 550 GSSDALKPKCLTIFYSEKPNAPNCSRKPITITVPAPFEYKSSKAVPWKYQCKVTVGQDVS 609

Query: 382 TPPLPVDNISGTGGVTRSGKCYTPDQLL 400
           +PPLP+DNI+G GG+TR+G+CYTPD LL
Sbjct: 610 SPPLPIDNITGVGGLTRTGRCYTPDSLL 636

[Close]

BLAST of Spg032301 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-46
Identity = 113/218 (51.83%), Postives = 143/218 (65.60%), Query Frame = 0


Query: 202 VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYTHKDLVQE 261
           V   P P+    QI  I        +  A+I TP E+LFEILL +GYVS+EY   +L  +
Sbjct: 365 VSNNPLPNHXNVQINAIECQEIESKSKVADITTPMEELFEILLGSGYVSVEYLCPNLKYK 424

Query: 262 GFDDNLTCLFHAGAKGHSLEQCRHFHKRVQELMDSKFLVVTQAHHREDEIDVVEELLPRE 321
           G+D++LTC FHAGAKGH+LEQC  F   VQEL+DSK L V  +H ++  I+VVE++   E
Sbjct: 425 GYDESLTCPFHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKG-INVVEDVSVAE 484

Query: 322 ---SLNSSFKLKP--LTIYYREKTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI 381
              +  SS  LKP  LTI+Y EK    +   K ITI VPAPF+YKSSKAVPW YE KVT+
Sbjct: 485 GSIAEGSSDALKPKRLTIFYSEKPDAPNCSRKPITITVPAPFEYKSSKAVPWKYECKVTV 544

Query: 382 NSE--TPPLPVDNISGTGGVTRSGKCYTPDQLLNREPE 405
             +  +PPLPVDNI+G GG+T +G+CYTPD LL R  E
Sbjct: 545 GQDVSSPPLPVDNITGVGGLTXTGRCYTPDSLLKRVSE 581

[Close]

BLAST of Spg032301 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.9e-45
Identity = 103/204 (50.49%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 206 PFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYTHKDLVQEGFDD 265
           P P+ K  QI  +        +  +EI TP + LFEIL  +GY+S+E+   D+  E +D+
Sbjct: 536 PLPNHKNVQINAVECQGIESRSKVSEITTPMQXLFEILWXHGYMSMEHLCPDIRCERYDE 595

Query: 266 NLTCLFHAGAKGHSLEQCRHFHKRVQELMDSKFLVVTQAHHREDEIDVVEELLPRESLNS 325
           NLTC +HAGA+GH LEQC  F ++VQEL+D K L VTQ+ H+E  IDVVE +   ES ++
Sbjct: 596 NLTCPYHAGARGHPLEQCSCFKEKVQELLDLKILTVTQS-HQEQRIDVVEYVSTAESSSA 655

Query: 326 SFKLKPLTIYYREK--TTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI--NSETPPL 385
           ++K KPLT+ YREK    ++  + ITIQVPAPF+Y SSKAVPW YE KVT+   +++  L
Sbjct: 656 AYKPKPLTVLYREKPEVPSNSWRPITIQVPAPFEYSSSKAVPWKYECKVTVGQKAQSSSL 715

Query: 386 PVDNISGTGGVTRSGKCYTPDQLL 400
           PVDNI+  GG+TR+G+CYTP+ LL
Sbjct: 716 PVDNITRGGGMTRTGRCYTPESLL 738

[Close]

BLAST of Spg032301 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-13
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 121 EEKGEQEKTKQDIEEIREKVDAIIATLEKGKMVADTTTPDTPIGNPQAGLPFPPSF---A 180
           + K EQEKT++DIEE+REK+DAI+  LEKGK +A+T+ P      PQ    F PSF    
Sbjct: 4   DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAETSNPIHEPPTPQFPPGFEPSFRPAG 63

Query: 181 SHVRTTAEASMPQHTTYNPLYDIPVGQYPFP 209
              R   E  M Q+TTYNPLYDIP GQ+P P
Sbjct: 64  PSFRPMTEGFMSQYTTYNPLYDIPAGQFPPP 94

HSP 2 Score: 192.2 bits (487), Expect = 4.9e-45
Identity = 100/185 (54.05%), Postives = 128/185 (69.19%), Query Frame = 0


Query: 224 AEIMTPKEKLFEILLVNGYVSIEYTHKDLVQEGFDDNLTCLFHAGAKGHSLEQCRHFHKR 283
           A+I TP  +LFEILL +GY+S+EY       +G+D++LTC FH GAKGHSLEQC  F  +
Sbjct: 498 ADITTPMXELFEILLGSGYISVEYLCPK--YKGYDESLTCXFHXGAKGHSLEQCNXFRMK 557

Query: 284 VQELMDSKFLVVTQAHHREDEIDVVEELLPRESLNSSFKLKPLTIYYREK--TTTHDPKS 343
           VQEL+DSK L    +H ++   +VVE++L  E  + S K KPLTI+YREK    +   K 
Sbjct: 558 VQELLDSKILTXANSHXKK-XTNVVEDILVAEGSSDSLKPKPLTIFYREKPDAPSCSRKP 617

Query: 344 ITIQVPAPFKYKSSKAVPWSYEYKVTINSE--TPPLPVDNISGTGGVTRSGKCYTPDQLL 403
             I VP PF+YKSSKAVPW YE KVT+  +  +P LPVDNI+G GG+TR+G+CYTPD LL
Sbjct: 618 XXITVPXPFEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLL 677

Query: 404 NREPE 405
            R  E
Sbjct: 678 KRVNE 679

[Close]

BLAST of Spg032301 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.2e-39
Identity = 91/165 (55.15%), Postives = 118/165 (71.52%), Query Frame = 0


Query: 224 AEIMTPKEKLFEILLVNGYVSIEYTHKDLVQEGFDDNLTCLFHAGAKGHSLEQCRHFHKR 283
           A+I TPKE+LFEILL +GYVS+EY   +L  + +D++LTC FHAGAKGHSLEQC  F  +
Sbjct: 451 ADIRTPKEELFEILLGSGYVSVEYLCPNLKYKEYDESLTCPFHAGAKGHSLEQCNSFRMK 510

Query: 284 VQELMDSKFLVVTQAHHREDEIDVVEELLPRESLNSSFKLKPLTIYYREK--TTTHDPKS 343
           VQEL+DSK L V  +H ++  I+VVE++   E  + + K K LTI+Y EK    +   K 
Sbjct: 511 VQELLDSKILTVANSHQKKG-INVVEDVSVAEGSSDALKPKRLTIFYSEKPDAPSCSQKP 570

Query: 344 ITIQVPAPFKYKSSKAVPWSYEYKVTINSE--TPPLPVDNISGTG 385
           ITI VPAPF+YKSSKAVPW Y+ KVT+  +  +PPLPVDNI+  G
Sbjct: 571 ITITVPAPFEYKSSKAVPWKYQCKVTVGQDVSSPPLPVDNITEVG 614

The following BLAST results are available for this feature:

BLAST of Spg032301 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158986.1	2.2e-47	50.96	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022143495.1	5.4e-46	51.83	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]
XP_022155098.1	5.9e-45	50.49	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_022155098.1	6.0e-13	52.75	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_022157796.1	1.1e-38	55.15	LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]	[more]

Pages

BLAST of Spg032301 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2J7	1.1e-47	50.96	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1CNY7	2.6e-46	51.83	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]
A0A6J1DM29	2.9e-45	50.49	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1DM29	2.9e-13	52.75	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1DZ90	5.2e-39	55.15	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]

Pages

BLAST of Spg032301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 119..139
None	No IPR available	COILS	Coil	Coil	coord: 15..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032301.1	Spg032301.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding