Spg032241 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg032241
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold2: 33971406 .. 33978954 (-)
RNA-Seq Expression	Spg032241
Synteny	Spg032241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGTAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTATTGTTAAGTATAACCCTTTGTATCAACCTGATTCTGACGTAGTGACTGTCGTGATGACTGAGAGAAGGACTATAGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAGTCAGATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCACAAAAAATCATGACAAAGGAAAGACTATAGTGCAAGATGATCAACCATAGTGTTCAGCTTCGATCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCGCAAACTGTATCAGAGCTTAGTACGGTGGACCTTCTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAGTTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTACCCACTTCGTTGAGACATGCGAGAACACTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTACAGGAAATGCCTTTGACTGATATACTGATCTAGAACCTGAGACAATAGATAGTTGGGCGAAATTCAAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACTGTTGGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGTTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTACTATTGAGATGTGCATTCAAGGCATGCACTAGGAACTCCTCTACATCCTTCAAGGTATAAAGCCTAGCACCTTTGAAGAACTAGCAACTCACGCCCACGATATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACACGAGGAAAGAAGGAAGGAGCGACGAAGAGACTATAGAAGAATCTATGGTTGTAAACACAACCCTTCTCAAGTTATCTTCAAAAGAAAAACGACATGAAAATGGAACATGTCGCTTAACCTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCTCTGATTCTGACATCGCTGACATGTTGGAACAGCTACTGGAAGCACAACTGATAGGGCTTCCTAAGTGTAAACGACCGGAAGAGATGAAAAAAGTCGATGATCCCAAATATTGCAAGTATCATCGAGTTGTTGGTCATCCAGTGGAAAGATGCTTCGTCCTAAAGGTCTTAATTCTAAATCTAGCTAAGGAAGGAAAAATTGAGCTCCACCTTGATGAAAGAGCTCAATCAAATCATGCTACAGTCAAAGGAAATGACAGACATAAAAAAACGAAGAGTCTCAAGAAGCTTCAATCTAAGAGGCAGAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGTGAAGGAACTCTTCTCCAAAACTTCCCACAAAAAAGAAAAGGGGAACTTTTCAACTTCCTACTGCATCCATGTAGAAGAGGTTGACAGTTCCAGGAAAGGTGAACAAGGGACTTCCGTCTTCGATTGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGGCAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCAACAAGAAGCTTCATAGTAGCATTCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTATAAATGAAGGATCTGATCAAGACCATGATAAAGATAAGAGCTTTTAAAATGTAAAAGCTCCTGATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACATGAGCTTAAAAGGTGAGTGCAAAAATTTTGAACTACGCCATGACTTGATCCCTTTTCTTCAAAGGGTACGTAGGCAACTTAAAGAAAACTTTAAGTTCAATCTCTGCAAATAAAAAAAAAAGTGCAACAAATATTGAAGCACGATAAGACAAATTGAAGAAACTCATCACTACTGGAGGCAACTGATAAGGGTAAAAAATATACCTATTTTACCCTTATATTTAGCTCATTTCTTGGTTAAATGTTGTATGTTGTGATCAATTTACTATTCCCGAGCTCAAAATATGCCTAGTTTGATAAGTTAGGGTGTTGAGAATTGCTTTTGTCAAATTTAACTCATTTGTGCTTAAAAAGACTTGATTTTAAGAGAATTTGACTTAGTTTGCTGTGGTGCAGAAAAACAGAAGAAAAGCTGGGATTTCCCAGAAATGCGACCACATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTTGCACACGGGTCGTTGTTGACGAGTCTTCTTCACACCTAACCGGCTGTTTTGACCCTGAAACTGACTGGGCAACCTTCCAGCACCTATTTCGCAGCTCCTCAACCAATTTCTACACTATATAAGCTAGCTCGAGATTCGAAGTCAAATCCAAGCAGAACTCACTTGGAAGAAAAGGGTGGTGACAGAACCCTGGCTCGACGCCAATGAGTAGGGATGCCCGAGGTCCTTCTTAGATGACCAAATTCTAACCTGAGAGAGAGTTAGCATCAAACCTTGTGGTTTGTAGAGAGTTTCACCCATTCCCATCTTGTAAAAGTGAGAGAGTGGAGTGTCTTAGCGAACTCTAGAAGGATTGTGTAAACAAAAAACCCATAATATTTAGCTATCTCCTTTATTTCCAACTCTTGAATCTTTTCATTATTTTGTATTCTTTACATCATTATTTCAATGAAAATGTGTTCATTTGCTTTTTATCCCATCATGAGTAGCTAAATCCCGTTGAGGGGTTCAATGTGGTAAATTCCCTTAGGGTTTAATGGCTTGAAAGTACTCTATTTGCTTAAGTTGTGTTTAATGCATGTCATTCTTTATTGATTATCACTCTAATCTTGCTGAGTTTAATTTGATCACTTAGACTTTGCATGTTATGTGAGTTTGATCTCGAAAGGGACAAACGATATCAGTTCTCATAAAGGTGATATAGGAGAAAAAGCTTGAAAGAGATTGTTCGGCAGTATAGGGCAAGCTGCCTAAGGCACTCTATATCGACTATAGGGTTAAAAGTTGCATTCATGATTTATCTATGTCGGAGTCGAGTCCCAGAAATGGGCATAATGGTACTCGCTTAGCCTTCTAACGGTTTTTGGAAACAAGGGCCAAATGGAAGTTAAATCTGACCCAATGCATTAAATACACTTAAGTTAGATATTGCATAAGTATGGTTGTTACCTTAGGGATGAATCCAAGTTGAATACCTCGTTTTATCTTACTGTTATTCTTTACTATTTTATTTGCATGCTTTGTTTATCTTTTCAAAAACCCAGTCAATCAACTTATTTTCTTTGGTTACCTTTTTAAGAGCAATCATTTGAGCAGTTTTCTTCATCAAATCTGAATTTCCAATTTAGTCCTCGTGGGATCGATACCCTTAGAATACTTCTGAGGTTTTTTATTACTACGTGCGATAGTGTATACTTGCACTTAAGTGTTAGCTGAATTATTCTTTATTATTTCACTTATCATCTTAACTCACATTCCATCCATTCAGCTGACGACGCACCAGCAACACAACAAATTGGAGTTATGCACCGTTATGAATGTGAAGCTACGAGTTGGATGAATAAAAGAAAACTTCATTTCTCCAAATTCAATGTCTCGCTAGCCTCAAGTTCGGTGTTTCATTCACCCTAAGTTCGTTGTTCCCTCTTCTCCAAGTTCGAAAGTTCAAACGCGCTTCGTTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCATGCGCTTCGCAGCAATTCCTTCTCTCCAAGTTCGAGGGTGCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAATTTTGAAGGTTCTCCGATGCACGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTGTTGCACGATTTACCGCAAGCATACGGGTCGTCATAAGTAATATAGTGATTTTGAGTATTGAGTATCATCTCCACAGGGATTGGATTTATTCAATTAATTATTACAAATAATCTTGCTTAGCTTTATTTAGAGAACAAAATCTAATACCGAAAAAGAATAAAAAGCTAATCTAGAAAACCAAAGATAAATGGAGACACAATTAGGAGGGATAATTCTAGAGTAATGATTTCATCAATTGGACCTTTAATCGCTTAATCATCTAACTAATATGGATTAACTAATCATTTGATTCATAAGTCTAGAAGCCTAATGACAAGGACTCTCCTTTCGGTTTCCTCTTTATTTACTTAGCATGGCATTACGACCCTTCAATACAACCTCTAACGTTATTTTTTCTATCCCGTGTCACTCGGGTAAATAAACGTTAGTCGTGCATTCAGTTCTATTCTAAGCTTCTCTCCGTCGAGTATCCACTTAGTAACGATTCATTTAATCAGTGATCAGTTGATTAAAAGCATTAAGGATAAAATGCACAAATGAACAATAATGACAATTAAACCAAATCAATTCATTAATTAAACAAAGGTTCAACAATTAATCAAAACTCATGGAATTTAGGAATTAACTACTCATAATCACTAAAATCCAATAATTCCTAATCACAACAATTCTAGAAACTAAAACATAAAGGAAAAAGGAAGAGAAATGCTCATAAAAGTGTCGATCTCCTCGATCCCGCGGCGACCTCCTTCGATCCCGAGCTCCAAAAATCTTCAGCAAAGCTTCAAAACTCTCCCAAGAATCCCCAGTTTTAGTGTGGACTCTAGAATGGGGTGAAAACCCACAAATTGGCTCCCCCAAACTTGGATGAAAATGGCTCTATTTATAGGCTCCCAGCAGGCGCAGCGTCGCGACGCTCTGACGTCACTTCTGTCTTGGGCTCCAAGTCGCCGCAGCGTCGCGACGCTACCCACTTTTTGGATCTTTCTGCATAGCTGCCTAGTGTCGGGACGCTCAAGGCTTAGCATCTCGACGCTAGGCCTTGAATCTTCTAGAATGACCCGATTTTGCATGGAATTTCGGGCCTCCTTCATTTCCTTTGGCCCAAATGCTTCATGTAGTGGATCTTGGGCTCTTTTCTTGACCAAACTTGATAATTAAGGCTTTGGAATTCATGAATTGGGGCTTCTAACTAATTCTTTTTGGGCTTCTGGACTTGGATCTACAATGGACTTCTCCAAATTGCTCAAAAAGTCTCCAAAATCATCCAAATTCTCTCAAAATTCTAGTTTTGCTTCCTTGGCTCGGTTTTCTGAAATTTAAACATAAAATAGCATTAAAGTACACAATTCATGCACAAAAGTAGCTAAAAATAATAGGAAAATGATAGCATTTATGCATGCTATCAGAAGGTTCTCGGGCTGTGTTGCTGCGCTACTTCCTTCTTTGAGAAGAGCATGCTTTGGGGTATTTATAAGTGCCAGGGATCCAATTTTAAATTAAAATCTTATCTCCAATAGAAATCCGTATCAAATTGGGTTTTGGATTAAAGTTTAGTTCGGTAATATGAGATTGGATTTGAATTCATTTGCAACCGACATTCAAATTTGTCCAAGATAAATTAGATAAATCTTCAATTTGATTCAATTTGAATCAAATTAATTTTGGTTAGGATTGAATTTGTTCTATCCCAAATCAAATTCCGAGGTTCACGTTAGATTCCTATCCCAAATTCAAACCAAAATTTTGGATAGAATTTAATATTTACTTCCATTAAGATTTGGGCATATTTTAAGCATTATCCCAAATTAAAACAAAACGTGAGTAAAATTCAAAATCAAGTTGTCTAAAATTGAATTTATCTTCAGAAAATTTGGGCATAATCATAATTCAATCCCAAATTAAACTTGACTGAAATTCAAAATTAGAAAAAAGTGCCATGCTTCAAATTCATATCACAGCCAGTTAGAACTTGAGCATTACTCAAATTCAAATCCCTTTGAGATTCAAGTTACAACTCGTTGCCAAGTCAGATCAAAATTTCGTTTTAAAGAAAAATCGACTTTTGATTAAATCGACATAGCAAGTGTGTAAAAAAAACCAATCAAAATTTTGACCAAAAATTGATTCCAAATAATTTCTTTTCGAGATTCATCCACACATAATTTGTACCTAAATCTCGAAAAGGGGGCATTTGTTGATGGAGAAATTTTGACCAATCACGAATTGCCACGTCGTTACATAAAATTAACGACGAAATTAAAATTAATTAAATTTGGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAGACAAAGTTGGTCAATTATAAATTTATAGAGCCAAATTTCTATTTGATCAATTAATTAAAATTAAATTATTTTGATCAAATTAATTAATTTTACCAATTAATTAAAAAATAATAATTATTTGGATCAAATTTGGGTCTTTTAAGTATTTGGGTCACATGGTTTTGGGTCAAATATGAACCAAACCCAAGACTAAATGGTTGAGCCCAAGACCAATAAAGCCCAAGCCCAAGCCCAAGCTGTTTGGCCTAAAAGTCACCAGGGCCCATCCTGCGATAACTCTATAAACAGAGGAGTTCTCCACCATTTCAAGGGGTCAGAATTTTGGAGCTCTCAACCAAACTTAGAGAATTCAGAGAAATTCTCCCAAAACGGAAGACTGAAGACTCTCTAAAATCTACAAGTTTCCAAGCACTGAACACTTCTTGAAGACTCTTTCAAACTGAGAAGACTTGAAGCCCCTAGAATCCATTGAAGCTTCAAACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATTCACACACAAGAGAGAGAATCAGAGGATTATGAACTAGAGATTGTATACTCACACACATACAACATTAATACAAATCAAAGTTTATTCCACGTGTCTCATTCATTTGAATTTACGTGTGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTCTCATCTCTTTCTCTTGTTTAAAGATCCAACCAACGTGATGGCACCAAAGAAAGCTCCCGCGAAGGTTACCAAATCAAGTAACTCTTACACTGGTCCTATCACTCGTAGTCATTCCCAAGGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTGTCATTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCAGATGTAGATTAG

mRNA sequence

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGTAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTATTGTTAAGTATAACCCTTTGTATCAACCTGATTCTGACGTAGTGACTGTCGTGATGACTGAGAGAAGGACTATAGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAAAGAGGTTGACAGTTCCAGGAAAGGTGAACAAGGGACTTCCGTCTTCGATTGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGGCAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCAACAAGAAGCTTCATAGTAGCATTCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGAAAAACAGAAGAAAAGCTGGGATTTCCCAGAAATGCGACCACATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTTGCACACGGGTCGTTGTTGACGAGTCTTCTTCACACCTAACCGGCTTTCCTTCTCTCCAAGTTCAAAGGTTCTCATGCGCTTCGCAGCAATTCCTTCTCTCCAAGTTCGAGGGTGCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAATTTTGAAGGTTCTCCGATGCACGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTGTTGCACGATTTACCGCAAGCATACGGGTCGTCATAAGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTGTCATTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCAGATGTAGATTAG

Coding sequence (CDS)

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGTAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTATTGTTAAGTATAACCCTTTGTATCAACCTGATTCTGACGTAGTGACTGTCGTGATGACTGAGAGAAGGACTATAGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAAAGAGGTTGACAGTTCCAGGAAAGGTGAACAAGGGACTTCCGTCTTCGATTGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGGCAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCAACAAGAAGCTTCATAGTAGCATTCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGAAAAACAGAAGAAAAGCTGGGATTTCCCAGAAATGCGACCACATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTTGCACACGGGTCGTTGTTGACGAGTCTTCTTCACACCTAACCGGCTTTCCTTCTCTCCAAGTTCAAAGGTTCTCATGCGCTTCGCAGCAATTCCTTCTCTCCAAGTTCGAGGGTGCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAATTTTGAAGGTTCTCCGATGCACGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTGTTGCACGATTTACCGCAAGCATACGGGTCGTCATAAGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTGTCATTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCAGATGTAGATTAG

Protein sequence

MGSTAHCCFNELRLQEDKASIIVGQETTLQGAYTNDKFIVKYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSLKKNRRKAGISQKCDHISGKAKMKCDRISGKTEAVPSCTRVVVDESSSHLTGFPSLQVQRFSCASQQFLLSKFEGAYVVRYCVVPSPILKVLRCTLLRCSFSKFEGVARFTASIRVVIRIEIKEDHTPLAVASRISKLIEESSKDKVAVKDNPLFESVIPTSKQPKDTLNPDVMSVMMADVD

Homology

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BLAST of Spg032241 vs. NCBI nr
Match: KAA0063719.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 7.5e-33
Identity = 93/171 (54.39%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 47  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTS 106
           QP   +       R  +E+   E+ E       +I E D+  +   KEVD+S + +Q TS
Sbjct: 140 QPRQSITLAEFLPRSFLEDHPKEILEVTACHTTSIAEVDNNYDSY-KEVDNSNEIKQRTS 199

Query: 107 VFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSTSVFDR 166
           VFD IKP TTR SVFQR+SM   EEENQC  ST  R STF+RLS+STSKK RPSTS FDR
Sbjct: 200 VFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDR 259

Query: 167 LKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
           LK+TNDQ +R+M  L+ K F E N + K+HS +PSRMKRK SV INTEGSL
Sbjct: 260 LKMTNDQQQREMKFLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 309

[Close]

BLAST of Spg032241 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 3.7e-32
Identity = 92/175 (52.57%), Postives = 114/175 (65.14%), Query Frame = 0


Query: 47  QPDSDVVTVVMTERRTIEERMAEMQE----HINTLMKAIEEKDSQIEHLKKEVDSSRKGE 106
           QP   +       R  +E+   E+ E    H  +++K     DS      +EVD+S + +
Sbjct: 75  QPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSY-----EEVDNSNEIK 134

Query: 107 QGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSTS 166
           Q TSVFD IKP TTR SVFQR+SM   EEENQC  ST  R S F+RLS+STSKK RPSTS
Sbjct: 135 QRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTS 194

Query: 167 VFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
            FDRLK+TNDQ +R+M +L+ K F E N + K+HS +PSRMKRK SV INTEGSL
Sbjct: 195 AFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg032241 vs. NCBI nr
Match: TYK28197.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 6.4e-32
Identity = 92/171 (53.80%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 47  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTS 106
           QP   +       R  +E    E+ E       +I E D+  +    EVD+S + +QGTS
Sbjct: 200 QPRQLITLAEFLPRSFLENHPEEILEVTACHTTSIVEVDNNYD---SEVDNSNEIKQGTS 259

Query: 107 VFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSTSVFDR 166
           VFDCIKP TTR SVFQR+SM   EEENQC  ST TR S F+RLS+STSKK RPSTS FDR
Sbjct: 260 VFDCIKPLTTRSSVFQRLSMTMKEEENQCPTSTYTRTSAFKRLSISTSKKDRPSTSSFDR 319

Query: 167 LKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
           +K+TNDQ K +M +L+ K F E N + K+HS +PSRMK+K SV INTEGSL
Sbjct: 320 IKMTNDQQK-EMKSLKAKPFHEENGDDKIHSRVPSRMKKKLSVDINTEGSL 366

[Close]

BLAST of Spg032241 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-31
Identity = 90/177 (50.85%), Postives = 114/177 (64.41%), Query Frame = 0


Query: 41  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRK 100
           K     QP   +       R  +E+   E+ E       +I E D+  +   +EVD+S +
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSY-EEVDNSNE 545

Query: 101 GEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPS 160
            +Q TSVFD IKP TTR SVFQR+SM   EE+NQC  ST  R S F+RLS+STSKK RPS
Sbjct: 546 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPS 605

Query: 161 TSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
           TS FDRLK+TNDQ +R+M +L+ K F E N + K+H+ +PSRMKRK SV INTEGSL
Sbjct: 606 TSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg032241 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-31
Identity = 90/177 (50.85%), Postives = 114/177 (64.41%), Query Frame = 0


Query: 41  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRK 100
           K     QP   +       R  +E+   E+ E       +I E D+  +   +EVD+S +
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSY-EEVDNSNE 545

Query: 101 GEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPS 160
            +Q TSVFD IKP TTR SVFQR+SM   EE+NQC  ST  R S F+RLS+STSKK RPS
Sbjct: 546 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPS 605

Query: 161 TSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
           TS FDRLK+TNDQ +R+M +L+ K F E N + K+H+ +PSRMKRK SV INTEGSL
Sbjct: 606 TSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg032241 vs. ExPASy TrEMBL
Match: A0A5A7VDY3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002440 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-33
Identity = 93/171 (54.39%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 47  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTS 106
           QP   +       R  +E+   E+ E       +I E D+  +   KEVD+S + +Q TS
Sbjct: 140 QPRQSITLAEFLPRSFLEDHPKEILEVTACHTTSIAEVDNNYDSY-KEVDNSNEIKQRTS 199

Query: 107 VFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSTSVFDR 166
           VFD IKP TTR SVFQR+SM   EEENQC  ST  R STF+RLS+STSKK RPSTS FDR
Sbjct: 200 VFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDR 259

Query: 167 LKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
           LK+TNDQ +R+M  L+ K F E N + K+HS +PSRMKRK SV INTEGSL
Sbjct: 260 LKMTNDQQQREMKFLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 309

[Close]

BLAST of Spg032241 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-32
Identity = 92/175 (52.57%), Postives = 114/175 (65.14%), Query Frame = 0


Query: 47  QPDSDVVTVVMTERRTIEERMAEMQE----HINTLMKAIEEKDSQIEHLKKEVDSSRKGE 106
           QP   +       R  +E+   E+ E    H  +++K     DS      +EVD+S + +
Sbjct: 75  QPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSY-----EEVDNSNEIK 134

Query: 107 QGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSTS 166
           Q TSVFD IKP TTR SVFQR+SM   EEENQC  ST  R S F+RLS+STSKK RPSTS
Sbjct: 135 QRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTS 194

Query: 167 VFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
            FDRLK+TNDQ +R+M +L+ K F E N + K+HS +PSRMKRK SV INTEGSL
Sbjct: 195 AFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg032241 vs. ExPASy TrEMBL
Match: A0A5D3DWJ4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00020 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-32
Identity = 92/171 (53.80%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 47  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTS 106
           QP   +       R  +E    E+ E       +I E D+  +    EVD+S + +QGTS
Sbjct: 200 QPRQLITLAEFLPRSFLENHPEEILEVTACHTTSIVEVDNNYD---SEVDNSNEIKQGTS 259

Query: 107 VFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSTSVFDR 166
           VFDCIKP TTR SVFQR+SM   EEENQC  ST TR S F+RLS+STSKK RPSTS FDR
Sbjct: 260 VFDCIKPLTTRSSVFQRLSMTMKEEENQCPTSTYTRTSAFKRLSISTSKKDRPSTSSFDR 319

Query: 167 LKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
           +K+TNDQ K +M +L+ K F E N + K+HS +PSRMK+K SV INTEGSL
Sbjct: 320 IKMTNDQQK-EMKSLKAKPFHEENGDDKIHSRVPSRMKKKLSVDINTEGSL 366

[Close]

BLAST of Spg032241 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.9e-32
Identity = 90/177 (50.85%), Postives = 114/177 (64.41%), Query Frame = 0


Query: 41  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRK 100
           K     QP   +       R  +E+   E+ E       +I E D+  +   +EVD+S +
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSY-EEVDNSNE 545

Query: 101 GEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPS 160
            +Q TSVFD IKP TTR SVFQR+SM   EE+NQC  ST  R S F+RLS+STSKK RPS
Sbjct: 546 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPS 605

Query: 161 TSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
           TS FDRLK+TNDQ +R+M +L+ K F E N + K+H+ +PSRMKRK SV INTEGSL
Sbjct: 606 TSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg032241 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.9e-32
Identity = 90/177 (50.85%), Postives = 114/177 (64.41%), Query Frame = 0


Query: 41  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRK 100
           K     QP   +       R  +E+   E+ E       +I E D+  +   +EVD+S +
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSY-EEVDNSNE 545

Query: 101 GEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPS 160
            +Q TSVFD IKP TTR SVFQR+SM   EE+NQC  ST  R S F+RLS+STSKK RPS
Sbjct: 546 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPS 605

Query: 161 TSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL 218
           TS FDRLK+TNDQ +R+M +L+ K F E N + K+H+ +PSRMKRK SV INTEGSL
Sbjct: 606 TSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

The following BLAST results are available for this feature:

BLAST of Spg032241 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063719.1	7.5e-33	54.39	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	3.7e-32	52.57	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK28197.1	6.4e-32	53.80	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK08944.1	1.4e-31	50.85	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	1.4e-31	50.85	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg032241 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDY3	3.6e-33	54.39	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TQ06	1.8e-32	52.57	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DWJ4	3.1e-32	53.80	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UI09	6.9e-32	50.85	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	6.9e-32	50.85	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Spg032241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg032241.1	Spg032241.1	mRNA