Spg032120 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg032120
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosome subunit biogenesis protein NIP7 homolog
Locationscaffold11: 38052899 .. 38053462 (-)
RNA-Seq ExpressionSpg032120
SyntenySpg032120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCCTTGGACGAGAAGGAGACCACCGTCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCTCTCACGAAGGCCCCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGGTCTATTACGTCAGTGATTCCCTCGTCAAGCGAGCCACCAATGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGCAAGTTCACTCATGGCGGCAGTTTCCATCTCACTGTTCACTCGCTAGGGCTCTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGCAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGTTCCTGGTGATGGAGTCGTTGTGTATTCTATGTCGGATGTGCCTTTGGGATTCGGAGTTGCGGCGAAGTCCACTCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGACGAACTTTGA

mRNA sequence

ATGAGGCCCTTGGACGAGAAGGAGACCACCGTCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCTCTCACGAAGGCCCCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGGTCTATTACGTCAGTGATTCCCTCGTCAAGCGAGCCACCAATGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGCAAGTTCACTCATGGCGGCAGTTTCCATCTCACTGTTCACTCGCTAGGGCTCTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGCAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGTTCCTGGTGATGGAGTCGTTGTGTATTCTATGTCGGATGTGCCTTTGGGATTCGGAGTTGCGGCGAAGTCCACTCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGACGAACTTTGA

Coding sequence (CDS)

ATGAGGCCCTTGGACGAGAAGGAGACCACCGTCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCTCTCACGAAGGCCCCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGGTCTATTACGTCAGTGATTCCCTCGTCAAGCGAGCCACCAATGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGCAAGTTCACTCATGGCGGCAGTTTCCATCTCACTGTTCACTCGCTAGGGCTCTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGCAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGTTCCTGGTGATGGAGTCGTTGTGTATTCTATGTCGGATGTGCCTTTGGGATTCGGAGTTGCGGCGAAGTCCACTCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGACGAACTTTGA

Protein sequence

MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLVKRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNHVLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL
Homology
BLAST of Spg032120 vs. NCBI nr
Match: XP_038878449.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Benincasa hispida])

HSP 1 Score: 384.0 bits (985), Expect = 7.2e-103
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLL+PNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENISPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. NCBI nr
Match: XP_004134205.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] >KGN57100.1 hypothetical protein Csa_009928 [Cucumis sativus])

HSP 1 Score: 378.6 bits (971), Expect = 3.0e-101
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETTVVFEKLHKFTGNNLKNIVENPSHEG EPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLL+PNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. NCBI nr
Match: XP_023528444.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528446.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528447.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528448.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528449.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528450.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 3.0e-101
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPSHEGP PNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 25  MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPGPNPGRYCFRLHKNKVYYVSDSLV 84

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 85  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 144

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 145 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 204

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 205 LRMEDEL 211

BLAST of Spg032120 vs. NCBI nr
Match: KAG6582220.1 (60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.5 bits (968), Expect = 6.8e-101
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPSHEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. NCBI nr
Match: XP_022137772.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Momordica charantia])

HSP 1 Score: 377.1 bits (967), Expect = 8.8e-101
Identity = 180/187 (96.26%), Postives = 182/187 (97.33%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNL+NIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR NLVALGTCIGK THGGSFHLTV SLGLLAPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. ExPASy Swiss-Prot
Match: A4QND5 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.8e-62
Identity = 116/187 (62.03%), Postives = 140/187 (74.87%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+D+PLGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

BLAST of Spg032120 vs. ExPASy Swiss-Prot
Match: Q6DFH9 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.4e-62
Identity = 116/187 (62.03%), Postives = 139/187 (74.33%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+ GTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

BLAST of Spg032120 vs. ExPASy Swiss-Prot
Match: Q4T2X8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.4e-61
Identity = 112/187 (59.89%), Postives = 139/187 (74.33%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV++GTC GKFT    F L + +L  LAP AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFGVAAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

BLAST of Spg032120 vs. ExPASy Swiss-Prot
Match: Q9WV50 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.3e-61
Identity = 115/187 (61.50%), Postives = 139/187 (74.33%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

BLAST of Spg032120 vs. ExPASy Swiss-Prot
Match: Q9Y221 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.6e-60
Identity = 114/187 (60.96%), Postives = 139/187 (74.33%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+D+PLGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

BLAST of Spg032120 vs. ExPASy TrEMBL
Match: A0A0A0L578 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.5e-101
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETTVVFEKLHKFTGNNLKNIVENPSHEG EPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLL+PNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. ExPASy TrEMBL
Match: A0A6J1GYK7 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458029 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.3e-101
Identity = 181/187 (96.79%), Postives = 182/187 (97.33%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPSHEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLA NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+A KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. ExPASy TrEMBL
Match: A0A6J1C974 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3673 GN=LOC111009133 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.3e-101
Identity = 180/187 (96.26%), Postives = 182/187 (97.33%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNL+NIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR NLVALGTCIGK THGGSFHLTV SLGLLAPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. ExPASy TrEMBL
Match: A0A6J1IQ28 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111479477 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 9.5e-101
Identity = 180/187 (96.26%), Postives = 182/187 (97.33%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPSHEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTVHSLGLL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. ExPASy TrEMBL
Match: A0A1S3AXI3 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=LOC103483837 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.2e-100
Identity = 180/187 (96.26%), Postives = 184/187 (98.40%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETTVVFEKLHKFTGNNLKNIVENPSHEG EPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLL+PNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

BLAST of Spg032120 vs. TAIR 10
Match: AT4G15770.1 (RNA binding )

HSP 1 Score: 330.9 bits (847), Expect = 6.8e-91
Identity = 156/187 (83.42%), Postives = 171/187 (91.44%), Query Frame = 0

Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTVVFEKL KF GNNLK IVENPS EGPE  PG YCFRL KN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLV+ GTCIGK+TH GSFHLT+ SL +LA NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IVPGDGVVV+SMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038878449.17.2e-10398.4060S ribosome subunit biogenesis protein NIP7 homolog [Benincasa hispida][more]
XP_004134205.13.0e-10196.7960S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] >KGN57100... [more]
XP_023528444.13.0e-10196.7960S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo... [more]
KAG6582220.16.8e-10196.7960S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita ar... [more]
XP_022137772.18.8e-10196.2660S ribosome subunit biogenesis protein NIP7 homolog [Momordica charantia][more]
Match NameE-valueIdentityDescription
A4QND53.8e-6262.0360S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83... [more]
Q6DFH96.4e-6262.0360S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G... [more]
Q4T2X85.4e-6159.8960S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O... [more]
Q9WV509.3e-6161.5060S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101... [more]
Q9Y2211.6e-6060.9660S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=... [more]
Match NameE-valueIdentityDescription
A0A0A0L5781.5e-10196.7960S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 ... [more]
A0A6J1GYK74.3e-10196.7960S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=36... [more]
A0A6J1C9744.3e-10196.2660S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3... [more]
A0A6J1IQ289.5e-10196.2660S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661... [more]
A0A1S3AXI31.2e-10096.2660S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=... [more]
Match NameE-valueIdentityDescription
AT4G15770.16.8e-9183.42RNA binding [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 103..178
e-value: 2.2E-16
score: 70.4
IPR016686Ribosome biogenesis factor, NIP7PIRSFPIRSF017190NIP7coord: 1..187
e-value: 2.8E-79
score: 262.7
IPR040598UPF0113, pre-PUA domainPFAMPF17833UPF0113_Ncoord: 2..90
e-value: 8.4E-24
score: 83.9
IPR005155UPF0113, PUA domainPFAMPF03657UPF0113coord: 104..182
e-value: 4.3E-21
score: 74.9
IPR036974PUA domain superfamilyGENE3D2.30.130.10PUA domaincoord: 102..187
e-value: 1.9E-41
score: 141.8
NoneNo IPR availableGENE3D3.10.450.220coord: 1..101
e-value: 2.5E-37
score: 128.8
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..187
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..187
NoneNo IPR availablePROSITEPS50890PUAcoord: 102..178
score: 13.987626
NoneNo IPR availableSUPERFAMILY88802Pre-PUA domaincoord: 1..101
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 103..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg032120.1Spg032120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042273 ribosomal large subunit biogenesis
biological_process GO:0042255 ribosome assembly
cellular_component GO:0005730 nucleolus
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding