Spg031813 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031813
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL28
Location	scaffold11: 38563593 .. 38569219 (-)
RNA-Seq Expression	Spg031813
Synteny	Spg031813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGGCATGATTTATCTCTAGCCCTATCGTCTCCCTCCCTCCCTCCCTCCCTCCAAAACATTCGAAACCTATCAAGAAAGACCTTTTCATTTTCCCAAATCGCACTAGGGTTAGGGTTAGGGTTTCCACTGCTTCTTTCGCGCAATATACGTTTGCAGGTCCTTGGTATCGCTTCGGCTTCCGAGGAAGAGACGCAAATCACCCACAATGGCGAGGTACCGGAGCCGGAGCAGAAGTTACAGCCCTCGCCGGCGTAGCAGAAGCCCACCACGGGGGCGGAAACGGTACGACGACGAGCCTCGAGAAAGGTACCGCGAAAGCAGGTCTTACAGGGACCGACGCTCTCCTGCTCCTTCCGGGTTGCTCGTGCGTAATCTCCCCCTGGATGCTAGGTATTTCATGTTCTTCTTCGAACTTTCTCTGTTATTGCTAACGTATCTCTTTCTTAGCTTGTTGGAGGAATTGAATGGCTCATTTGCTTTCGCGTTTGTACACTACCGGTGCCCCTTTGTTTAGAGTTTCGAATTCTGGGTTGTAAGGAAATACAGCTTATTGTAGGAATTTTGATTAGTAGTTATATAAAGAGTTGATCACGTAGAGCCTTTGTTGCGTGTAATTTATTGTCAAGCTGTGTGCAATCGCTTTACATTGTATTGTTTTCTCGTTTTCTATTGTCTATCCAATATATAAATTATAAAGAGTAATGATTTAGTGTTTTGATTGCATTCCATACAGGCCGGAAGATCTTAGGATCCCGTTTGAGCGATTTGGTCCTGTTAAGGATGTGTATCTGCCGAAAAACTACTACACTGGGTATGCCCGCTTTCATGTTAACTTGTGCGAACTTGGGTGTTGAAGAAACCGATTCATTATTTTCTTGTACTTTTTTCTTAATTATCAGGGTATCCACACCGGAAAATAGAGGTTTGGCTACATTAGTTATGAAAGAAATATTGAAAAATGTAATATTATTTTCTAGAGTAAGTTGTGAGATCAGAATTTCGTAGCACTTTTGGAGTTCCAAAGTTTAAATTGCCTTTACTGTCTTCTAGTTATTTGGTTAAGATTGTTTAACAAGTCAATACGAGGAAATGAAGATTAAAATTTCCGTAGATGAAAGGAATTCGCAAATTCTTTGAATAACCTGAACTTAGTTCACAATTAATCCTAGAGAGGATAAGGAATGACTGATAAGGAATTTGTTTCTGGAAAACAATATGTTAGTATGTAATGACAGTGATTAACACTTTAGTTAAAACCATCGTTTTAATTTAGTTTAAATTCAATTGATGGTGAAGAAAATATAAATTAATTTAATTCATTGAATGGACTGTGGTTTTGCCAGTGTTTTAAAAGGCTCAAGACACACTATGGCGCAATGGCCTCCTGGGCCCTAGGCACAAGGCGCACAAAAATGCGTTTTTTTAATTTTTTTTTTAATTTTTTTTAAGGTGCAGTATATAGAAAAAAATTTACAAAAACATATACATGTATATAAAACACTTTCATGGCAAGTAATGAAGTTTTTAACCAAGAAAAATAGATAAAAGATAAACAAGGTTTCAACATTAGTCTTCCAACATAGAGTCAAATGTCAATACTCCACAAAAAAAACAGTGAGTTTAGTATTGTTAATATGCCTTTTGACATTCCGAATGACCAAGTACGGTGATGTCAATACTCCACAAAAAATAGTGAGTTTAGTATTGTTGATATGCCTTGAATCTGATGTTCGACACTCTGAACGACCAAGTACGGGGTCTTGAATATGATAATAATGTGAAGCCCCAAAGGCGCCTAAAGTGTGCGCCTTGGCCGTGCCTTCTTCACTGCGCCTCGCTTCAAGTGCACCTTGCGCCTTTTAAAACACTCGGTTTTGCATTAAATTTGGGTCTGAAAATTAATACAGCTTCTCATATAAGACTGTGAGATTGTGACAACCCTTTCTTGTTATTAGTACAGAAATGGGTTTATATTTCTTGTGTTTTGAATTTGTGGAATTTAATTTATGTTTTGTTCCAAAATATTTTAGTAATGATGTATTTGTCCGTCCATTTTTTGCTTGTTTCATGATGTTATCATATTCCCTTCATTGCCTATTTGTAGGGAGCCCCGGGGATTTGGGTTTGTAAAGTTTCGATTTGCAGAAGATGCAGCTGAAGCTAAACAACAGCTAAATCATACAGTTATAGGTGGAAGGGAGATACGGATTGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTTTGACTTCACGCTCAAGGTTCTATGACCTTCCTCCTAATTTCTATCTTGCAGTATCTTTTTGGTTTGAATATCTTCTCCACGAAAGGATTATTTTTAATCTTTAACTTATATATTGATGGTCTTTTTCTTGCTTCGCATATGTAGTGGCAGGAGCTACCGAAGGCGTTCTCCAGGAAGGTCTCCGAGACGGCGGTATCGTTGTCAGTGTCAATACATTTATCTTGGCTTCTTTTTCTTGCTTTCAAGTTTCATGAAAAGAAGAAATTGTTTTTTGGGTGGATGTGGATATTTGATTACCATCATCGTGATGCAGTAATGTAATTACACCCTCATTTTATGCTCAATAAGCCTTTTCTATTTGACTGCAGCTTACTCACGCTCACCTTCACCTGCCAGGCATGATTCAAGGTTGGATCTTATTTGTCATACTCCTTCCATTACTAGCAACACTAACGCCATTATTGTCCTGCTGTTTCCATTACTTCTTGCTATTACCATGTTTTGAAATATTGTTTATTCCTATCTTGATAATTAGTATGTTGGGCATGCCTTCTCTGAACCATATATTTTTGTACTGCAAGTTTATAACATGCCAAAACATTCTTTTTGGATGAGAAACATAGTATAATATTTTGAATTTTGGTACTTGTCTTATAGAGTATCCAAACCTCCAATTGAAGTACTTGTTCATTGTTTTGATTTTCTGTCTAACCAAAATGGTCTATAAATTTAATGTAAGACGAAGTTCACATTGGGTGAAAATCATTTTTGTAGAAATATTTTGATAAACACCGTGTAATTCTATTCACTCAACCTGAAGGTCATGAGTTCCGTTTTGTTCCAAGAACTTAAAGTTATCAATGGTGTGTCAATTTTAAGGAACACAATCCATTTCTAATGGATGAATTATCTTTGTTCCCGTGTCATGTTGTGATGTGTCATAGTTTATATAAGTGGTACTCTGGTATGGTTTCAGTTGCAGACTAAATATTGGTGTCATAGTTTCAACAATAGTGGAACTTTTAATCTTCATTTCCCCATTAGGTTTATAATGTCAGCCCAATATATAAAATCTAACCAACCCATACTTTCAGTTTTTTTGTTCTTCTACATGCTTTAATTGTAGGACTTTTATTTCATTTGCTTGATGAATCTTATCATGTTTAAACGAAGCAATTAATGTTTGATTTGATGCACGTGGAATATTCTACTCCCTACATAGTACAGAATTGCATTGCAGGACATTGTATACAATCTACTCAATTCCTTGTTTATGCAGATATTAAAGTAAAGGGAGACTTTAAAGACTTGTTGATTAATAAAGTTTAACAAGAAAAGCGATCATAAAGTGATGGGCAACTTGCTTACTTTACCTATCGAACCTTCTCCATGAGTACAATCTATTACTTATTCAATTATCTTAGTTGCGTGGTTTTTATTTGTTTGTTGACTTCTGTTTTGTGTGAGGCAGAAGTTAAGCATTGGTGAGAGTTTAAAATCAAAAGTTATCTCTGGTTCTTCTTTTTTTCTTTTTCTCCCATACAAGTCTCAACGATTTATTAGCAAGAAAGTAATTTTTAAGTTTGATATCTTCTTTTGCATATACCATCCAGTTAAGAAAGATTAGAGCTTATAGTTGGCCAAAGAAAGAAATCATCTTCAAAGGAGAAAGGCCAAAGTTTTACTGGTTGTGGTATGGTGACATTGTCCAAGAAAAGATAATGTGATATTTAGAAAGTTGGGGCAAAGAGAGCTATGAACTTGTCAGAAGCTGATCAACCAGTACAGCTTAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATAATTTTGTTCGGAAACCTGAAAATGGTGCAGGTAAAAGTCATGTTTTAGTTGATCAGTTTTGAAAATGATGTTAATAGAAACTTGTGCTTATAAAAGTATGATATAGTATCATAAGTACCTATTCAACGTACCACATTGGGGCCCTTGAAGACTGCTCGAACAGGTTTTCTTTCCTGTTACAGAGAAGATGGTTGTGTTGTGCTTTTTTAAGTCTGAATGGAAATTGTATCTGTTTGATATGTTGATTTATTGTTCTATTAAATTTTCCCCATTGTTTTGGATGATGCAGGAACCGTGGGGCAAGGGATGAGTATCTCTCTCCTGCACGTTCTAGATCAATTTCACGATCTCGTTCTCCTCGTGATAGGCGGGATTACAGCCGATCTCCGAGTCCGAAGGAGAATGGTCGGAGCCCCCGTGATGTGGACATCGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGTTAGCCGCAGTCCTTCTGGATCTCGTTCACGATCCTACAGGTATTTTACCTTTTAAGTTCCTTTTACTGGTCATTTAGAAGACAAATCTCTGCCTGTCAGAATAAGAGGATCTATGCAAAAAACCGTTTGGTAGTGTAGTTTGATGAATAGTCGATTAATGCGTATCATCTATATTGTTAGCTTCAAGATTCATGTTGATTATTTAAACTAAATAAGTAAAGCTTGTGTTACTGTTTCCTTTTTCATGGTAATTCACGTGAAATGTCCAAGGGGATAAAGGAGGGCTATGCATATGTCAATAGATGTCCAATATGTATGGGTTAAGCCTACGATGTTGCAATCACTATTTTCTTCAAGAATTTTGTCGGTTATCTTGTGATCTTGTAGTATCTAGTAAAACCCTTTGGAGAGATTTCATTGTTTTGCTTAATACAATATGAACTCAGAATGAAATTTGAGATCGCTTTAGAGTTAGTGAGAGCAAAGTTGTTGACGTTGACATTATTGATAAATCTTTTATTTTTCTCAATGGATGCTGGTTTCTTATCTCCAAATAACTGTTCATTATTGAACATTGTTCCGCCAAATGTATGTGTTTAGCCGGTAATCGCTATACCTGGTTGATTGAAGAATTTACAGAGTTGACTAACACCGTACCATGCTGCTCATGCAGTCCTCGTTGATGGATGCGTTCTGGGTTCGTGCGGTGCTTCTATTGCAGTCCTCAAGATTTGTTAACCTGCCTTCAGTTGTGGCCAGATGAACCTGCTATTCCATGATATGCAGCTCTGTAAGGAATTGAATTTATATGTGAAAGTCAGGACGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGAATATAATCGTGGTGTTTCTCAAGCAGTTAATTTCATGTGAATGCATGCTGGTAGACCTTTGCTAGATTTAGGATTTTGGGTTCAGTGGATTTCGTTTGTACTCTGTATATGTCGAGTGGCTGTATTTGCTGATACCTATAGGTTTTGAAAAACTTAGGAAGTTCAAATCTTGATAACGATATTGTCTTGTTTGTTTACTACCAGTTTTATTGTTCAGTA

mRNA sequence

ATGGCGAGGTACCGGAGCCGGAGCAGAAGTTACAGCCCTCGCCGGCGTAGCAGAAGCCCACCACGGGGGCGGAAACGGTACGACGACGAGCCTCGAGAAAGGTACCGCGAAAGCAGGTCTTACAGGGACCGACGCTCTCCTGCTCCTTCCGGGTTGCTCGTGCGTAATCTCCCCCTGGATGCTAGGCCGGAAGATCTTAGGATCCCGTTTGAGCGATTTGGTCCTGTTAAGGATGTGTATCTGCCGAAAAACTACTACACTGGGGTATCCACACCGGAAAATAGAGTGGCAGGAGCTACCGAAGGCGTTCTCCAGGAAGGTCTCCGAGACGGCGGTATCGTTCTTACTCACGCTCACCTTCACCTGCCAGGCATGATTCAAGAAGTTAAGCATTGGAACCGTGGGGCAAGGGATGAGTATCTCTCTCCTGCACGTTCTAGATCAATTTCACGATCTCGTTCTCCTCGTGATAGGCGGGATTACAGCCGATCTCCGAGTCCGAAGGAGAATGGTCGGAGCCCCCGTGATGTGGACATCGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGTTAGCCGCAGTCCTTCTGGATCTCGTTCACGATCCTACAGAATGAAATTTGAGATCGCTTTAGAGTTAGTGAGAGCAAAGTTGTTGACGTTGACATTATTGATAAATCTTTTATTTTTCTCAATGGATGCTGGTTTCTTATCTCCAAATAACTGTTCATTATTGAACATTGTTCCGCCAAATTCCTCGTTGATGGATGCGTTCTGGGTTCGTGCGGTGCTTCTATTGCAGTCCTCAAGATTTGTTAACCTGCCTTCAGTTGTGGCCAGATGA

Coding sequence (CDS)

ATGGCGAGGTACCGGAGCCGGAGCAGAAGTTACAGCCCTCGCCGGCGTAGCAGAAGCCCACCACGGGGGCGGAAACGGTACGACGACGAGCCTCGAGAAAGGTACCGCGAAAGCAGGTCTTACAGGGACCGACGCTCTCCTGCTCCTTCCGGGTTGCTCGTGCGTAATCTCCCCCTGGATGCTAGGCCGGAAGATCTTAGGATCCCGTTTGAGCGATTTGGTCCTGTTAAGGATGTGTATCTGCCGAAAAACTACTACACTGGGGTATCCACACCGGAAAATAGAGTGGCAGGAGCTACCGAAGGCGTTCTCCAGGAAGGTCTCCGAGACGGCGGTATCGTTCTTACTCACGCTCACCTTCACCTGCCAGGCATGATTCAAGAAGTTAAGCATTGGAACCGTGGGGCAAGGGATGAGTATCTCTCTCCTGCACGTTCTAGATCAATTTCACGATCTCGTTCTCCTCGTGATAGGCGGGATTACAGCCGATCTCCGAGTCCGAAGGAGAATGGTCGGAGCCCCCGTGATGTGGACATCGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGTTAGCCGCAGTCCTTCTGGATCTCGTTCACGATCCTACAGAATGAAATTTGAGATCGCTTTAGAGTTAGTGAGAGCAAAGTTGTTGACGTTGACATTATTGATAAATCTTTTATTTTTCTCAATGGATGCTGGTTTCTTATCTCCAAATAACTGTTCATTATTGAACATTGTTCCGCCAAATTCCTCGTTGATGGATGCGTTCTGGGTTCGTGCGGTGCTTCTATTGCAGTCCTCAAGATTTGTTAACCTGCCTTCAGTTGTGGCCAGATGA

Protein sequence

MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGVSTPENRVAGATEGVLQEGLRDGGIVLTHAHLHLPGMIQEVKHWNRGARDEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSGSRSRSYRMKFEIALELVRAKLLTLTLLINLLFFSMDAGFLSPNNCSLLNIVPPNSSLMDAFWVRAVLLLQSSRFVNLPSVVAR

Homology

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BLAST of Spg031813 vs. NCBI nr
Match: KAG7018652.1 (Serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.0 bits (676), Expect = 7.3e-67
Identity = 158/226 (69.91%), Postives = 170/226 (75.22%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDD+PR+RYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYT----GVSTPENRVAGATEGVLQE------GLRD 120
           ARPEDLRIPFERFGPVKDVYLPKNYYT    G    + R A       Q+      G R+
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 GGIVLTHAHLHLPGMIQEVKH--------------WNRGARDEYLSPARSRSISRSRSPR 180
             IV    +   P  ++  K                +RGARDEYLSPARSRSISRS SPR
Sbjct: 121 IRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPR 180

Query: 181 DRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSGSRSRSY 203
           DRRDYSRSP+PKENGRSPR VDIARSRSRSPRA SRSPSGSRSRSY
Sbjct: 181 DRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSY 226

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BLAST of Spg031813 vs. NCBI nr
Match: XP_022979912.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-64
Identity = 157/246 (63.82%), Postives = 170/246 (69.11%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDD+PR+RYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTG---------------------------VSTPE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTG                           +   E
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 NRVAGATEG-----VLQEGLRDGGIVLT------------HAHLHLPGMIQEVKHWNRGA 180
            R+  A E       ++   R  G                H++   P   +     +RGA
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGA 180

Query: 181 RDEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSG 203
           RDEYLSPARSRSISRS SPRDRRDYSRSP+PKENGRSPR VDIARSRSRSPRA SRSPSG
Sbjct: 181 RDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSG 240

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BLAST of Spg031813 vs. NCBI nr
Match: XP_023527505.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-64
Identity = 156/246 (63.41%), Postives = 170/246 (69.11%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDD+PR+RYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTG---------------------------VSTPE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTG                           +   E
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 NRVAGATEG-----VLQEGLRDGGIVLT------------HAHLHLPGMIQEVKHWNRGA 180
            R+  A E       ++   R  G                H++   P   +     +RGA
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGA 180

Query: 181 RDEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSG 203
           RDEYLSPARSRSISRS SPRDRRDYSRSP+PKENGRSPR VDIARSRSRSPRA SRSPSG
Sbjct: 181 RDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSG 240

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BLAST of Spg031813 vs. NCBI nr
Match: XP_022955785.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata])

HSP 1 Score: 254.2 bits (648), Expect = 1.3e-63
Identity = 155/246 (63.01%), Postives = 169/246 (68.70%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSR+PPRGRKRYDD+PR+RYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTG---------------------------VSTPE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTG                           +   E
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 NRVAGATEG-----VLQEGLRDGGIVLT------------HAHLHLPGMIQEVKHWNRGA 180
            R+  A E       ++   R  G                H++   P   +     +RGA
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGA 180

Query: 181 RDEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSG 203
           RDEYLSPARSRSISRS SPRDRRDYSRSP+PKENGRSPR VD ARSRSRSPRA SRSPSG
Sbjct: 181 RDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDTARSRSRSPRAASRSPSG 240

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BLAST of Spg031813 vs. NCBI nr
Match: XP_022137875.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 6.4e-63
Identity = 157/245 (64.08%), Postives = 168/245 (68.57%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRSPPRGRKRYDD+PR+RY ESRSYRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYT----GVSTPENRVAGATEGVLQE------GLRD 120
           ARPEDLR PFERFGPVKDVYLPKNYYT    G    + R A       Q+      G R+
Sbjct: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 GGIVLTHAHLHLPGMIQ-------------------------------EVKH--WNRGAR 180
             IV    +   P  ++                                 +H   NRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180

Query: 181 DEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSGS 203
           DEYLSPARSRSISRSRSP DRRDYSRSPSPKENGRSPR+VDI RSRSRS RA SRSPSGS
Sbjct: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240

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BLAST of Spg031813 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-26
Identity = 99/220 (45.00%), Postives = 119/220 (54.09%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R RSPPR RK YDD    R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYT----GVSTPENRVAGATEGVLQE------GLRD 120
           ARP DLR  FERFGP+KD+YLP+NYYT    G    + R A      ++       G R+
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 GGIVLTHAHLHLPGMIQEVKHWN--RGARDEYLSPARSRSISRSRSPRDR-RDYSRSPSP 180
             IV    +   P   QE++  N   G   +Y   +        RSPR R R +SRS SP
Sbjct: 121 IAIVFAEENRKTP---QEMRTTNGTSGRHGDYKRTSH-------RSPRRRYRSHSRSRSP 180

Query: 181 --KENGRSPRDVDIARSRSRSPRAVSRSPSGSRSRSYRMK 206
             +E+  S    D   S  R  R++SRSP     R Y+ +
Sbjct: 181 PRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSR 207

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BLAST of Spg031813 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-16
Identity = 90/249 (36.14%), Postives = 112/249 (44.98%), Query Frame = 0


Query: 11  YSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRGYG-GRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTG-------VSTPENRVAGATEGVLQE----GLRDGGIVLTHAH 130
           ERFGPV+DVY+P++YY+G       V   +   AG  +  +      G     +V + + 
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 LHLPGMIQEVKHWNR---GARDEYLSPARSRSISRSRSPR-------DRRDYSRSPSPKE 190
                M  + +  +R   G+RD     +RSRSISRSRSPR         R  S SP+P+ 
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRR 188

Query: 191 NGRSPR------------------------------DVDI-------ARSRSRSPRAVSR 202
            G  PR                              D +I       A  R R  RAVSR
Sbjct: 189 RGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIREKPGYEAEDRRRGGRAVSR 248

[Close]

BLAST of Spg031813 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-14
Identity = 80/211 (37.91%), Postives = 98/211 (46.45%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R R    Y  R    P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGR----YGGRSRDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTG---------VSTPENRVAGA--TEGVLQEGLRDGGIVL 126
           R  FE+FGPVKD+YLP++YYTG            P +        +G L  G R+  +V 
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLG-RELTVVF 121

Query: 127 THAHLHLPGMIQEVKHWNRGARDEYLSPARSRSISRSRSPRDRRDYSRSP---SPKENGR 186
              +   P  ++  +      RD   +P R  S SRS  PR  R  SRS    SP     
Sbjct: 122 AEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRH 181

Query: 187 SPRDVDIARSRSRSPRAVSRSPS--GSRSRS 202
            PR +     R    R+ SRSP+  GSR RS
Sbjct: 182 HPRSISPREERYDGRRSYSRSPASDGSRGRS 202

[Close]

BLAST of Spg031813 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.3e-13
Identity = 83/214 (38.79%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R R   S   R S  P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGS---RDSDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTG---------VSTPENRVAG--ATEGVLQEGLRDGGIVL 126
           R PFE+FGPVKD+YLP++YYTG            P +        +G L  G R+  +V 
Sbjct: 62  RRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLG-RELTVVF 121

Query: 127 THAHLHLPGMIQEVKHWNRGARDEYLSPARSRSISRSRSP---RDRRDYSRS---PSPKE 186
              +   P    E++  +RG R       R      SRSP   R RR  SRS    SP  
Sbjct: 122 AEENRKKP---TEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPA 181

Query: 187 NGRSPRDVDIARSRSRSPRAVSRSP--SGSRSRS 202
                R V     R    R+ SRSP  +GSR RS
Sbjct: 182 KRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRS 203

[Close]

BLAST of Spg031813 vs. ExPASy Swiss-Prot
Match: Q09511 (Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans OX=6239 GN=rsp-4 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-08
Identity = 63/180 (35.00%), Postives = 83/180 (46.11%), Query Frame = 0


Query: 50  SGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGVSTP-------ENRVA----G 109
           + L + NL     P DLR  FER+G + DV++P++ Y+  S         E R A     
Sbjct: 19  TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78

Query: 110 ATEGVLQEGLRDGGIVLTHAHLHLPGMIQEVKHWNRGARDEYLSPARSRS--ISRSRSPR 169
            T+G L +G     + +T A    P   +  +    G R       RSRS   SRSRSPR
Sbjct: 79  RTDGKLVDGRE---LRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPR 138

Query: 170 DRRDYSRSPSPKENGRSPRDVDIARSRSRSP---------------RAVSRSPSGSRSRS 202
             R  +RSP  ++   SP   D +RSRSRSP               R+ SRSPS SRS S
Sbjct: 139 RSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSNS 195

[Close]

BLAST of Spg031813 vs. ExPASy TrEMBL
Match: A0A6J1IQ05 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661 GN=LOC111479462 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 7.4e-65
Identity = 157/246 (63.82%), Postives = 170/246 (69.11%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDD+PR+RYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTG---------------------------VSTPE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTG                           +   E
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 NRVAGATEG-----VLQEGLRDGGIVLT------------HAHLHLPGMIQEVKHWNRGA 180
            R+  A E       ++   R  G                H++   P   +     +RGA
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGA 180

Query: 181 RDEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSG 203
           RDEYLSPARSRSISRS SPRDRRDYSRSP+PKENGRSPR VDIARSRSRSPRA SRSPSG
Sbjct: 181 RDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSG 240

[Close]

BLAST of Spg031813 vs. ExPASy TrEMBL
Match: A0A6J1GW11 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=3662 GN=LOC111457670 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 6.2e-64
Identity = 155/246 (63.01%), Postives = 169/246 (68.70%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSR+PPRGRKRYDD+PR+RYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTG---------------------------VSTPE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTG                           +   E
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 NRVAGATEG-----VLQEGLRDGGIVLT------------HAHLHLPGMIQEVKHWNRGA 180
            R+  A E       ++   R  G                H++   P   +     +RGA
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSR-SRGA 180

Query: 181 RDEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSG 203
           RDEYLSPARSRSISRS SPRDRRDYSRSP+PKENGRSPR VD ARSRSRSPRA SRSPSG
Sbjct: 181 RDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDTARSRSRSPRAASRSPSG 240

[Close]

BLAST of Spg031813 vs. ExPASy TrEMBL
Match: A0A6J1C7W4 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3673 GN=LOC111009197 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 157/245 (64.08%), Postives = 168/245 (68.57%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRSPPRGRKRYDD+PR+RY ESRSYRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYT----GVSTPENRVAGATEGVLQE------GLRD 120
           ARPEDLR PFERFGPVKDVYLPKNYYT    G    + R A       Q+      G R+
Sbjct: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 GGIVLTHAHLHLPGMIQ-------------------------------EVKH--WNRGAR 180
             IV    +   P  ++                                 +H   NRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180

Query: 181 DEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSGS 203
           DEYLSPARSRSISRSRSP DRRDYSRSPSPKENGRSPR+VDI RSRSRS RA SRSPSGS
Sbjct: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240

[Close]

BLAST of Spg031813 vs. ExPASy TrEMBL
Match: A0A5D3CXM8 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00340 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 6.9e-63
Identity = 154/246 (62.60%), Postives = 171/246 (69.51%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDD+PR+RYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYT----GVSTPENRVAGATEGVLQE------GLRD 120
           ARPEDLRIPFERFGPVKDVYLPKNYYT    G    + R A       Q+      G R+
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 GGIVLTHAHLHLPGMIQ-------------------------------EVKH--WNRGAR 180
             IV    +   P  ++                                 +H   +RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSGS 204
           DEYLSPARSRSIS SRSPRDR+DYSRSP+PK+NGRSPR+VD ARSRSRSP+  SRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

[Close]

BLAST of Spg031813 vs. ExPASy TrEMBL
Match: A0A1S3AXW0 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=LOC103483786 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 153/245 (62.45%), Postives = 170/245 (69.39%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDD+PR+RYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYT----GVSTPENRVAGATEGVLQE------GLRD 120
           ARPEDLRIPFERFGPVKDVYLPKNYYT    G    + R A       Q+      G R+
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 GGIVLTHAHLHLPGMIQ-------------------------------EVKH--WNRGAR 180
             IV    +   P  ++                                 +H   +RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPRDRRDYSRSPSPKENGRSPRDVDIARSRSRSPRAVSRSPSGS 203
           DEYLSPARSRSIS SRSPRDR+DYSRSP+PK+NGRSPR+VD ARSRSRSP+  SRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

[Close]

BLAST of Spg031813 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-27
Identity = 99/220 (45.00%), Postives = 119/220 (54.09%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R RSPPR RK YDD    R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYT----GVSTPENRVAGATEGVLQE------GLRD 120
           ARP DLR  FERFGP+KD+YLP+NYYT    G    + R A      ++       G R+
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 GGIVLTHAHLHLPGMIQEVKHWN--RGARDEYLSPARSRSISRSRSPRDR-RDYSRSPSP 180
             IV    +   P   QE++  N   G   +Y   +        RSPR R R +SRS SP
Sbjct: 121 IAIVFAEENRKTP---QEMRTTNGTSGRHGDYKRTSH-------RSPRRRYRSHSRSRSP 180

Query: 181 --KENGRSPRDVDIARSRSRSPRAVSRSPSGSRSRSYRMK 206
             +E+  S    D   S  R  R++SRSP     R Y+ +
Sbjct: 181 PRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSR 207

[Close]

BLAST of Spg031813 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-17
Identity = 90/249 (36.14%), Postives = 112/249 (44.98%), Query Frame = 0


Query: 11  YSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRGYG-GRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTG-------VSTPENRVAGATEGVLQE----GLRDGGIVLTHAH 130
           ERFGPV+DVY+P++YY+G       V   +   AG  +  +      G     +V + + 
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 LHLPGMIQEVKHWNR---GARDEYLSPARSRSISRSRSPR-------DRRDYSRSPSPKE 190
                M  + +  +R   G+RD     +RSRSISRSRSPR         R  S SP+P+ 
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRR 188

Query: 191 NGRSPR------------------------------DVDI-------ARSRSRSPRAVSR 202
            G  PR                              D +I       A  R R  RAVSR
Sbjct: 189 RGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIREKPGYEAEDRRRGGRAVSR 248

[Close]

BLAST of Spg031813 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-15
Identity = 80/211 (37.91%), Postives = 98/211 (46.45%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R R    Y  R    P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGR----YGGRSRDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTG---------VSTPENRVAGA--TEGVLQEGLRDGGIVL 126
           R  FE+FGPVKD+YLP++YYTG            P +        +G L  G R+  +V 
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLG-RELTVVF 121

Query: 127 THAHLHLPGMIQEVKHWNRGARDEYLSPARSRSISRSRSPRDRRDYSRSP---SPKENGR 186
              +   P  ++  +      RD   +P R  S SRS  PR  R  SRS    SP     
Sbjct: 122 AEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRH 181

Query: 187 SPRDVDIARSRSRSPRAVSRSPS--GSRSRS 202
            PR +     R    R+ SRSP+  GSR RS
Sbjct: 182 HPRSISPREERYDGRRSYSRSPASDGSRGRS 202

[Close]

BLAST of Spg031813 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-15
Identity = 80/211 (37.91%), Postives = 98/211 (46.45%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R R    Y  R    P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGR----YGGRSRDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTG---------VSTPENRVAGA--TEGVLQEGLRDGGIVL 126
           R  FE+FGPVKD+YLP++YYTG            P +        +G L  G R+  +V 
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLG-RELTVVF 121

Query: 127 THAHLHLPGMIQEVKHWNRGARDEYLSPARSRSISRSRSPRDRRDYSRSP---SPKENGR 186
              +   P  ++  +      RD   +P R  S SRS  PR  R  SRS    SP     
Sbjct: 122 AEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRH 181

Query: 187 SPRDVDIARSRSRSPRAVSRSPS--GSRSRS 202
            PR +     R    R+ SRSP+  GSR RS
Sbjct: 182 HPRSISPREERYDGRRSYSRSPASDGSRGRS 202

[Close]

BLAST of Spg031813 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-14
Identity = 82/224 (36.61%), Postives = 99/224 (44.20%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDEPRERYRESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R R    Y  R    P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGR----YGGRSRDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTG--VSTPENRVAGATEGVLQEGLRDGGIVLTHAHLHLPG 126
           R  FE+FGPVKD+YLP++YYTG  + T   + +    G       D        H H+ G
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKH-HMDG 121

Query: 127 MI------------------QEVKHWNRGA----RDEYLSPARSRSISRSRSPRDRRDYS 186
            +                   E++   RG     RD   +P R  S SRS  PR  R  S
Sbjct: 122 YLLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSRS 181

Query: 187 RSP---SPKENGRSPRDVDIARSRSRSPRAVSRSPS--GSRSRS 202
           RS    SP      PR +     R    R+ SRSP+  GSR RS
Sbjct: 182 RSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRS 215

The following BLAST results are available for this feature:

BLAST of Spg031813 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018652.1	7.3e-67	69.91	Serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita argyrosperma sub...	[more]
XP_022979912.1	1.5e-64	63.82	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima]	[more]
XP_023527505.1	4.4e-64	63.41	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo...	[more]
XP_022955785.1	1.3e-63	63.01	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata]	[more]
XP_022137875.1	6.4e-63	64.08	serine/arginine-rich SC35-like splicing factor SCL28 [Momordica charantia]	[more]

BLAST of Spg031813 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PDV2	3.8e-26	45.00	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q8L3X8	2.1e-16	36.14	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q9SEU4	5.7e-14	37.91	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	6.3e-13	38.79	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q09511	1.6e-08	35.00	Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans OX=62...	[more]

BLAST of Spg031813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQ05	7.4e-65	63.82	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1GW11	6.2e-64	63.01	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=36...	[more]
A0A6J1C7W4	3.1e-63	64.08	serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3...	[more]
A0A5D3CXM8	6.9e-63	62.60	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXW0	2.6e-62	62.45	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of Spg031813 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18810.1	2.7e-27	45.00	SC35-like splicing factor 28	[more]
AT3G55460.1	1.5e-17	36.14	SC35-like splicing factor 30	[more]
AT1G55310.1	4.1e-15	37.91	SC35-like splicing factor 33	[more]
AT1G55310.2	4.1e-15	37.91	SC35-like splicing factor 33	[more]
AT1G55310.3	3.4e-14	36.61	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..91 e-value: 4.3E-5 score: 23.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..95 e-value: 6.9E-10 score: 41.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..81
None	No IPR available	PANTHER	PTHR23147:SF133	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28	coord: 1..81
IPR000221	Protamine P1	PROSITE	PS00048	PROTAMINE_P1	coord: 2..12
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031813.1	Spg031813.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0007283	spermatogenesis
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding