Spg031432 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031432
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	50S ribosomal protein L28
Location	scaffold11: 40714527 .. 40715307 (-)
RNA-Seq Expression	Spg031432
Synteny	Spg031432

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCCGTAATGTTAGGAATGTCGCCGGTGAATACTTCCGGCGTCATGGCAGCATCATCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGAGTGGCATCAAAATCTCCTCCAACCACTCGCTCATCTCGCCCTCGCCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCCGTTGCTCGTAATCTTCTCTTCTCAACTCTTGCTCAATTTAACGTTTTCTGGGATTTGGTTGTTCGACCCTTTTTGTTCTCTAATTGTATGGCTGAAAGTGCTAGATGATCGAAAGGGGCTGGGTGTTCTGAATTCATTCTTATGGATTTTGTATTTGAATTAAGATTTCAATCAGCCATGATGGCCATCCAAAATTGCTATTGGTTTAAGTTCCCAGATGCCTGATTGCTGTATTGGTCACTGTTTAACTGTTGATTGTTGGCTCTTGCTCTTTTTCTTTGAATGGTGGGAATTGGAATTGGGAACTATTTCAAACTTGGTTCCATTATTTGCTGTTTCAGGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAGTACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTATGTCAAACTACGCTTGTCAACAAAGGCATTGAAGACCATTGAGAAAAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAATGA

mRNA sequence

ATGGCAGCTTCCGTAATGTTAGGAATGTCGCCGGTGAATACTTCCGGCGTCATGGCAGCATCATCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGAGTGGCATCAAAATCTCCTCCAACCACTCGCTCATCTCGCCCTCGCCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCCGTTGCTCGTAATCTTCTCTTCTCAACTCTTGCTCAATTTAACATGCCTGATTGCTGTATTGGTCACTGTTTAACTGTTGATTGTTGGCTCTTGCTCTTTTTCTTTGAATGGTGGGAATTGGAATTGGGAACTATTTCAAACTTGGTTCCATTATTTGCTGTTTCAGGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAGTACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTATGTCAAACTACGCTTGTCAACAAAGGCATTGAAGACCATTGAGAAAAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAATGA

Coding sequence (CDS)

ATGGCAGCTTCCGTAATGTTAGGAATGTCGCCGGTGAATACTTCCGGCGTCATGGCAGCATCATCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGAGTGGCATCAAAATCTCCTCCAACCACTCGCTCATCTCGCCCTCGCCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCCGTTGCTCGTAATCTTCTCTTCTCAACTCTTGCTCAATTTAACATGCCTGATTGCTGTATTGGTCACTGTTTAACTGTTGATTGTTGGCTCTTGCTCTTTTTCTTTGAATGGTGGGAATTGGAATTGGGAACTATTTCAAACTTGGTTCCATTATTTGCTGTTTCAGGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAGTACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTATGTCAAACTACGCTTGTCAACAAAGGCATTGAAGACCATTGAGAAAAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAATGA

Protein sequence

MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPISAPLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPLFAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Homology

[Close]

BLAST of Spg031432 vs. NCBI nr
Match: XP_022979375.1 (50S ribosomal protein L28, chloroplastic [Cucurbita maxima])

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-59
Identity = 137/201 (68.16%), Postives = 144/201 (71.64%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPIS 60
           MA S +LG +PV++SGVMAASS+KLHFRTKPN ELGFL+SQLSGIKISSNHSLISPSPIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPL 120
           APLRPALQPVAR                                                
Sbjct: 61  APLRPALQPVAR------------------------------------------------ 120

Query: 121 FAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK 180
                RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALK
Sbjct: 121 -----RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK 148

Query: 181 TIEKNGLDAVAKKAGIDLRKE 202
           TIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 TIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spg031432 vs. NCBI nr
Match: XP_038885053.1 (50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 6.9e-59
Identity = 137/201 (68.16%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPIS 60
           MAA V+LG +P  +SGVMAASSTKL F TKPNSELGFLTSQL+GIKISSNHSLISPSPIS
Sbjct: 1   MAAFVVLGFTPATSSGVMAASSTKLQFTTKPNSELGFLTSQLAGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPL 120
           APLRPALQPVAR                                                
Sbjct: 61  APLRPALQPVAR------------------------------------------------ 120

Query: 121 FAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK 180
                RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALK
Sbjct: 121 -----RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK 148

Query: 181 TIEKNGLDAVAKKAGIDLRKE 202
           TIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 TIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spg031432 vs. NCBI nr
Match: XP_023526300.1 (50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 5.8e-58
Identity = 135/201 (67.16%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPIS 60
           MA S +LG +PV +SGVMAASS+KLHFRTKPN ELGFL+SQLSGIKISSNHSLIS SPIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISSSPIS 60

Query: 61  APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPL 120
           APLRPALQPVAR                                                
Sbjct: 61  APLRPALQPVAR------------------------------------------------ 120

Query: 121 FAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK 180
                RVCPFTGKKAN+KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALK
Sbjct: 121 -----RVCPFTGKKANRKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK 148

Query: 181 TIEKNGLDAVAKKAGIDLRKE 202
           TIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 TIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spg031432 vs. NCBI nr
Match: XP_022145908.1 (50S ribosomal protein L28, chloroplastic [Momordica charantia])

HSP 1 Score: 233.4 bits (594), Expect = 1.7e-57
Identity = 136/201 (67.66%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPIS 60
           MAASV+LG+SP NTSGVMAASST+LHFRTK NSELGFLTSQL GIKISSN+S I  +PIS
Sbjct: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60

Query: 61  APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPL 120
           APLRPALQPVAR                                                
Sbjct: 61  APLRPALQPVAR------------------------------------------------ 120

Query: 121 FAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK 180
                RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALK
Sbjct: 121 -----RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK 148

Query: 181 TIEKNGLDAVAKKAGIDLRKE 202
           TIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 TIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spg031432 vs. NCBI nr
Match: KAG7018806.1 (50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.5 bits (589), Expect = 6.4e-57
Identity = 134/201 (66.67%), Postives = 141/201 (70.15%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPIS 60
           MA S +LG +PV +SGVMAASS+KLHFR+K N ELGFL+SQLSGIKISSNHSLIS SPIS
Sbjct: 39  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 98

Query: 61  APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPL 120
           APLRPALQPVAR                                                
Sbjct: 99  APLRPALQPVAR------------------------------------------------ 158

Query: 121 FAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK 180
                RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALK
Sbjct: 159 -----RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK 186

Query: 181 TIEKNGLDAVAKKAGIDLRKE 202
           TIEKNGLDAVAKKAGIDLRKE
Sbjct: 219 TIEKNGLDAVAKKAGIDLRKE 186

[Close]

BLAST of Spg031432 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-39
Identity = 92/174 (52.87%), Postives = 109/174 (62.64%), Query Frame = 0


Query: 28  RTKPNSELGFLTSQLSGIKISSNHSLISPSPISAPLRPALQPVARNLLFSTLAQFNMPDC 87
           ++K +SEL F+TSQLSG+KISS H + S +P+S P +P+LQPVAR               
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQPVAR--------------- 90

Query: 88  CIGHCLTVDCWLLLFFFEWWELELGTISNLVPLFAVSGRVCPFTGKKANKKNLVSFSNHK 147
                                                 R+CPFTGKK+N+ N VS SNHK
Sbjct: 91  --------------------------------------RICPFTGKKSNRANKVSHSNHK 150

Query: 148 TKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 202
           TKKLQFVNLQYK++WWEAGKRYVKLRLSTKA+KTIEKNGLDAVAKKAGIDL K+
Sbjct: 151 TKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151

[Close]

BLAST of Spg031432 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 109/205 (53.17%), Postives = 119/205 (58.05%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPN---SELGFLTSQLSGIKISSNHSL-ISP 60
           MAAS ML  +P N        S  L    KP    SELGFLTSQLSGI+IS +    I  
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSL----KPKATVSELGFLTSQLSGIQISPSPLFPIIS 60

Query: 61  SPISAPLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISN 120
            PISAPL+P+LQPVAR                                            
Sbjct: 61  KPISAPLKPSLQPVAR-------------------------------------------- 120

Query: 121 LVPLFAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLST 180
                    R+CPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKR+VKLRLST
Sbjct: 121 ---------RICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLST 148

Query: 181 KALKTIEKNGLDAVAKKAGIDLRKE 202
           KALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 KALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spg031432 vs. ExPASy Swiss-Prot
Match: O22795 (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 96/196 (48.98%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 9   MSPVNTSGV---MAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPISAPLRP 68
           M+ + T G    M +S+  +   T  + ELGFLTSQLSG++IS   S +  + IS P  P
Sbjct: 1   MTTMATQGAWLRMTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVI-NRISLPSFP 60

Query: 69  ALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPLFAVSG 128
            +QP+                                                    V+ 
Sbjct: 61  GIQPI----------------------------------------------------VAR 120

Query: 129 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 188
           R+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKR+VKLRLSTKALKTIEKN
Sbjct: 121 RICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 143

Query: 189 GLDAVAKKAGIDLRKE 202
           GLDAVAKKAGIDLRK+
Sbjct: 181 GLDAVAKKAGIDLRKK 143

[Close]

BLAST of Spg031432 vs. ExPASy Swiss-Prot
Match: Q8DG62 (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 126 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 185
           RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 186 GLDAVAKKAGIDLRK 201
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]

BLAST of Spg031432 vs. ExPASy Swiss-Prot
Match: B8HUV7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 126 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 185
           RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 186 GLDAVAKKAGIDLRK 201
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]

BLAST of Spg031432 vs. ExPASy TrEMBL
Match: A0A6J1IT28 (50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479118 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 5.1e-60
Identity = 137/201 (68.16%), Postives = 144/201 (71.64%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPIS 60
           MA S +LG +PV++SGVMAASS+KLHFRTKPN ELGFL+SQLSGIKISSNHSLISPSPIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPL 120
           APLRPALQPVAR                                                
Sbjct: 61  APLRPALQPVAR------------------------------------------------ 120

Query: 121 FAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK 180
                RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALK
Sbjct: 121 -----RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK 148

Query: 181 TIEKNGLDAVAKKAGIDLRKE 202
           TIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 TIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spg031432 vs. ExPASy TrEMBL
Match: A0A6J1CX73 (50S ribosomal protein L28, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015252 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 8.2e-58
Identity = 136/201 (67.66%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPIS 60
           MAASV+LG+SP NTSGVMAASST+LHFRTK NSELGFLTSQL GIKISSN+S I  +PIS
Sbjct: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60

Query: 61  APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPL 120
           APLRPALQPVAR                                                
Sbjct: 61  APLRPALQPVAR------------------------------------------------ 120

Query: 121 FAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK 180
                RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALK
Sbjct: 121 -----RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK 148

Query: 181 TIEKNGLDAVAKKAGIDLRKE 202
           TIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 TIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spg031432 vs. ExPASy TrEMBL
Match: A0A6J1E916 (50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431774 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.1e-57
Identity = 134/201 (66.67%), Postives = 141/201 (70.15%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTSGVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPIS 60
           MA S +LG +PV +SGVMAASS+KLHFR+K N ELGFL+SQLSGIKISSNHSLIS SPIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 60

Query: 61  APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPL 120
           APLRPALQPVAR                                                
Sbjct: 61  APLRPALQPVAR------------------------------------------------ 120

Query: 121 FAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK 180
                RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKALK
Sbjct: 121 -----RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK 148

Query: 181 TIEKNGLDAVAKKAGIDLRKE 202
           TIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 TIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Spg031432 vs. ExPASy TrEMBL
Match: A0A5A7U1W6 (50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001850 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.0e-57
Identity = 135/203 (66.50%), Postives = 142/203 (69.95%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTS-GVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPI 60
           MAASV+ G +P  TS GVMA SSTKLHFRTKPNS+LGFL SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLV 120
           S APLRP+LQP+AR                                              
Sbjct: 61  SPAPLRPSLQPIAR---------------------------------------------- 120

Query: 121 PLFAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKA 180
                  R+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKA
Sbjct: 121 -------RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKA 150

Query: 181 LKTIEKNGLDAVAKKAGIDLRKE 202
           LKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 LKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of Spg031432 vs. ExPASy TrEMBL
Match: A0A1S3AWK5 (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.0e-57
Identity = 135/203 (66.50%), Postives = 142/203 (69.95%), Query Frame = 0


Query: 1   MAASVMLGMSPVNTS-GVMAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPI 60
           MAASV+ G +P  TS GVMA SSTKLHFRTKPNS+LGFL SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLV 120
           S APLRP+LQP+AR                                              
Sbjct: 61  SPAPLRPSLQPIAR---------------------------------------------- 120

Query: 121 PLFAVSGRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKA 180
                  R+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLRLSTKA
Sbjct: 121 -------RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKA 150

Query: 181 LKTIEKNGLDAVAKKAGIDLRKE 202
           LKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 181 LKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of Spg031432 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 151.4 bits (381), Expect = 7.9e-37
Identity = 96/196 (48.98%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 9   MSPVNTSGV---MAASSTKLHFRTKPNSELGFLTSQLSGIKISSNHSLISPSPISAPLRP 68
           M+ + T G    M +S+  +   T  + ELGFLTSQLSG++IS   S +  + IS P  P
Sbjct: 1   MTTMATQGAWLRMTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVI-NRISLPSFP 60

Query: 69  ALQPVARNLLFSTLAQFNMPDCCIGHCLTVDCWLLLFFFEWWELELGTISNLVPLFAVSG 128
            +QP+                                                    V+ 
Sbjct: 61  GIQPI----------------------------------------------------VAR 120

Query: 129 RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 188
           R+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKR+VKLRLSTKALKTIEKN
Sbjct: 121 RICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 143

Query: 189 GLDAVAKKAGIDLRKE 202
           GLDAVAKKAGIDLRK+
Sbjct: 181 GLDAVAKKAGIDLRKK 143

The following BLAST results are available for this feature:

BLAST of Spg031432 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979375.1	1.1e-59	68.16	50S ribosomal protein L28, chloroplastic [Cucurbita maxima]	[more]
XP_038885053.1	6.9e-59	68.16	50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S...	[more]
XP_023526300.1	5.8e-58	67.16	50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022145908.1	1.7e-57	67.66	50S ribosomal protein L28, chloroplastic [Momordica charantia]	[more]
KAG7018806.1	6.4e-57	66.67	50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Spg031432 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30956	1.3e-39	52.87	50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P...	[more]
P82245	1.4e-38	53.17	50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P...	[more]
O22795	1.1e-35	48.98	50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
Q8DG62	2.9e-20	64.00	50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972...	[more]
B8HUV7	5.0e-20	64.00	50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of Spg031432 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IT28	5.1e-60	68.16	50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1CX73	8.2e-58	67.66	50S ribosomal protein L28, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1E916	3.1e-57	66.67	50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7U1W6	7.0e-57	66.50	50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AWK5	7.0e-57	66.50	50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567...	[more]

BLAST of Spg031432 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33450.1	7.9e-37	48.98	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 125..201 e-value: 7.8E-28 score: 98.3
IPR001383	Ribosomal protein L28	TIGRFAM	TIGR00009	TIGR00009	coord: 126..181 e-value: 7.5E-16 score: 56.4
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 124..199 score: 13.694472
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 126..184 e-value: 4.9E-18 score: 65.0
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 20..201
None	No IPR available	PANTHER	PTHR13528:SF6	50S RIBOSOMAL PROTEIN L28, CHLOROPLASTIC	coord: 20..201
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 126..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031432.1	Spg031432.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome