Spg031169 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031169
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Gag/pol protein
Location	scaffold8: 28825550 .. 28829341 (-)
RNA-Seq Expression	Spg031169
Synteny	Spg031169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACTACACGAACGCGTTGGATCATTGCGTTTGTATCAAAATACAAAGCGGGTCGTATCCATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCCTATACTACAGACCCTTTAGGCTAAAACTTGAACATCGATCCCCGTATGTCCCTACATACTAGTTCAAGCCTCATTCTATTAGCCTTGGATGTTTAGTTTATTGGATTAGGGTTAATAAGACAAGATATAATACAAACATTGAATAATACATCACTTTTATTAATGTTCGGTCAAATGTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACACTTTCGGCCTCACATATCTCGAGTTGGTGAGGTTTCAGCCTTCCTTGGGTGTTTTTGGACAACCCTCTGTAAGTTTAGCTTGACCCATTGTTCGTTCGCTCTAAATCTCGGTTACCCAAGCCATAACGACTTCCAAATTACAGGTTCGGGCCATTTGCAGCCACTGTACAGCACCTAATTGTGTCTGTTTGGTGCTGATCGGTAAGTCTCTGTGCCCAAAAACCTTTGTTAATTGTCGTGGTTGGCTTTAGTGCGATTTCTAACCCTTGGGTGTCTTTTGGTGTTAGTTTCGTGCGATTTCAGACCTTGGACAGCACCTATTTAAGGAGTTTAAGTGCTGTGTTAGGTCATTCCAGCAAGGTTCAACCCCTGTTTGAGTGAGTTTTAGTTCCTTATCTTTCGCTTTAGTTTCCCTTAGGTGTTTGGATGGTTGTTAAGTTGTTCCCTAATCTCTAGGAGCCCTTGGTTGTGTTGTAGGTTCGCTTAGAACTTGCTCTTGTGCTTTCCAGCAGCATTGGTATTTAAGAGTGCTTGTAAGTAGTTTCTACTTGCTCGATCTTGTTTGATTGTGTGAGCATGATGTTTGTTTATGTTTATCTTTATTCTTGTGGAAGCATGTTCTGAAACGCTTGAGATGTGCTTATTCTGTTTGTACTTGTGGTAAGCATGTGTGGTGTTGATTAAGCATGAGATATGTGTCTGCTGAGTTGTGGTCGTTGTTAAGCATGTTATGTTTGGGTCGAGCATGATGGGTTAGGCTAGCTTGTGTCACGGGATGTGTAGCATGAGTCTAGCGGTTGCGGTACATGACGCGTAATTCATGTGTAGGTGCGCAGCGTGGCGCGTAATTCACGTGTTTGGATTAGCGTAGCATGACGCATAATGCATGCGAATAGTTTAGCGTAGCGTGGCGCGTAATGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAAACAAATTGTATACTTGTTTCAATAAAGTGTTATTGAGTTTCTACAATAAAGTGTTATTGTTAAATATTGCACAATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTACATGTGACTTGAACTAGTATGTGGGGACATACGGGGATTGGTGTTCAAGTAACAACCTAAAAGGTCTATAGTACAAGGATAATGTTGGGTACCTTATCCTGGTAACACTATGTGATACGACCCGCTTTGTATTCGATACAGACGTATTAATCCAAGGCGTCCATGTAGGAGACATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACTACGAAATAGTAAACCACTAGATGTAACACCGTTAACTTGTTAGTTTACTATTTCAATACGATGACCTAGGTAACTCAGTCTTAATCCTAAGTGTGTCATGAACTCCTTCTCATGAGGGATTGTCTTTTGATTAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATCTAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCCGCCCTCTCACTGGCCCGAGAGGAACTTTCTGTTTATTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAGACAGATGTAACACAAGGGTAAAACGGTAATTTGACCCAGCCGTGATTACGAACACTCGTGGAGGATTGACTTACCGGCATAGGTCTATATCCGTGGACTCAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTTTTTAGTGGAATGACCCACAGTTAATGAATATTGGTTAACCTGATTAATGAGTTTAATCTATTAACCTCATATCATTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCCCTGCTAGCTCGTAAAGAGTAATTAGGAACAAATATATCTTGAGAGAATTTGAATAGTTCAAATTCATATTGGGAATTAAGTTAATTGTATGAGATACAAATTAATATAATGTATAATGATGCATTAAAATATAAAGTCTAATTTGAGATTAAACTTTATTAAATTGAGAGATTGATATATTTGAAAGAGTTCAAATATATGTCTAATTAAATATAGGGTATTTAATTAGAAGATGAATTAATTAATTATGAATTAATTTAGTTTAAATTAAATGAGATTTAATTAAACTATAGTCTATGAGAGAAATAAATATTTGAAGAAGTTCAAATATTAATATGAATTTGATTCATAATAAATTTATAGGATATAAGAGAATTTGAAGGAGTTCAAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGCATGAAATTAAATATATGATATTTAATTGGGTAATTAATTAATTAACTAATAGAAGGTCTGAAATTAAATATATGATATTTAATTGGTGATTAATTAATTAAAGAATTAATTAATTGGAAATTAATCAATTATGGAAATGATTAATCACTTATGGAAGTAAATAATCATTTATGGAAATGATTTAATCACTTATGGAAGTGATCAATCATTTATGGAAAAGATTAATCAATTGTGGAATTGATTGGTCATGGAATTGATTAATTATGGAAAAGATTAAATCAGTTATGGAAATAATTGATTTTAAATGAATATTTTATTCATGGTCTTTCTCCTATAAATAGAACACTAAACCTAGGGTTTAGGTACAACAACATAAGGCCACAAGAATGCACTCTTGCATTCTCTCTAGTCTCCCTCTCATATTCTCTCAACTCAAGAACTCTAGGGAGAATTTTCTCTCTAGTGTTTTTCTCATTCAAGATTAGGTAGTCCCACAACTACGTTCCTAATCTTAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAAACAAGAATCATCCGTTGAAGTATTCAGAGTCGTCAACGGAGGTATGTTTCTCATCGCTTAATCTTTTTTTTTGCCAATGTATTGGTATTTCGTAGAACAAAATTAATTTACGAACGGTCTAATTGCTTCCGCTGTAACGGAATTGGGAATTCCAATCCTTCATAATGCACGTGTGTGGCTTGCGTAGCATGACGCGTAATGCATGTGGTTGATAGCGTAGCATGATGCGTAAATCGTGCGTGGTTTAGTAGGGTGTGGGTGCATAGTGTGGGAAGCATATGCATGTGACGTTTATTGCTTTCTAAGCATGATGAGTTTGTACTGCTTTGGAAGCATGATGTATGCGTGTGAGAAGCATGTTGTTTGCCTTGTTTGATGCCTGTGATCTAACTCGTGTGAGCTACTTACCAGTACCGCGGAAGTACTGATACAACCTTCCCCACCTTCCCCCCAACATTTTAGATGTTGCAGGTATCGAGGATGATCCAGACCATGGTGGCGAGAAGGAGGACTATGAGGAAAACTCCTAG

mRNA sequence

ATGTCAACTACACGAACGCGTTGGATCATTGCGTTTGTATCAAAATACAAAGCGGGTCGTATCCATAGTGTCACCAGGATAAGTTTCGTGCGATTTCAGACCTTGGACAGCACCTATTTAAGGAGTTTAAGTGCTGTGTTAGGAGCCCTTGGTTGTGTTGTAGGTTCGCTTAGAACTTGCTCTTGTGCTTTCCAGCAGCATTGGTATTTAAGAGTGCTTGTGCGCAGCGTGGCGCCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATCTAGGAGAAGTAGATGAGTCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAAACAAGAATCATCCGTTGAAGTATTCAGAGTCGTCAACGGAGGTATCGAGGATGATCCAGACCATGGTGGCGAGAAGGAGGACTATGAGGAAAACTCCTAG

Coding sequence (CDS)

ATGTCAACTACACGAACGCGTTGGATCATTGCGTTTGTATCAAAATACAAAGCGGGTCGTATCCATAGTGTCACCAGGATAAGTTTCGTGCGATTTCAGACCTTGGACAGCACCTATTTAAGGAGTTTAAGTGCTGTGTTAGGAGCCCTTGGTTGTGTTGTAGGTTCGCTTAGAACTTGCTCTTGTGCTTTCCAGCAGCATTGGTATTTAAGAGTGCTTGTGCGCAGCGTGGCGCCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATCTAGGAGAAGTAGATGAGTCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAAACAAGAATCATCCGTTGAAGTATTCAGAGTCGTCAACGGAGGTATCGAGGATGATCCAGACCATGGTGGCGAGAAGGAGGACTATGAGGAAAACTCCTAG

Protein sequence

MSTTRTRWIIAFVSKYKAGRIHSVTRISFVRFQTLDSTYLRSLSAVLGALGCVVGSLRTCSCAFQQHWYLRVLVRSVAPWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDESGKIKWWCSSLLQSKQESSVEVFRVVNGGIEDDPDHGGEKEDYEENS

Homology

[Close]

BLAST of Spg031169 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 81  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG 119
           VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFP LG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]

BLAST of Spg031169 vs. NCBI nr
Match: KAA0025994.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 81  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG 119
           VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Sbjct: 223 VRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]

BLAST of Spg031169 vs. NCBI nr
Match: TYK27885.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-06
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 80  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDESGKIKWWC 131
           ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+      WC
Sbjct: 83  YIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDKCS--LQWC 131

[Close]

BLAST of Spg031169 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-06
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 80  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEV 121
           ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Sbjct: 168 YIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLGSI 208

[Close]

BLAST of Spg031169 vs. NCBI nr
Match: KAA0040839.1 (uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK17815.1 uncharacterized protein E5676_scaffold306G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-05
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 71  RVLVRSVAPWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDES 124
           RV V  +   VRVA  PTQYA+ FGDKT+W AG++ TQ+ IHSF  LG +  S
Sbjct: 16  RVHVDDMRVKVRVAKLPTQYAYHFGDKTKWGAGNIITQDEIHSFATLGSIKSS 68

[Close]

BLAST of Spg031169 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 81  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG 119
           VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFP LG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]

BLAST of Spg031169 vs. ExPASy TrEMBL
Match: A0A5A7SJY0 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003160 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.2e-07
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 81  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG 119
           VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Sbjct: 223 VRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]

BLAST of Spg031169 vs. ExPASy TrEMBL
Match: A0A5D3DX33 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00690 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 80  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDESGKIKWWC 131
           ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+      WC
Sbjct: 83  YIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDKCS--LQWC 131

[Close]

BLAST of Spg031169 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 80  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEV 121
           ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Sbjct: 168 YIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLGSI 208

[Close]

BLAST of Spg031169 vs. ExPASy TrEMBL
Match: A0A5A7THR9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00640 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 71  RVLVRSVAPWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDES 124
           RV V  +   VRVA  PTQYA+ FGDKT+W AG++ TQ+ IHSF  LG +  S
Sbjct: 16  RVHVDDMRVKVRVAKLPTQYAYHFGDKTKWGAGNIITQDEIHSFATLGSIKSS 68

The following BLAST results are available for this feature:

BLAST of Spg031169 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065950.1	1.1e-06	73.68	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop...	[more]
KAA0025994.1	1.5e-06	73.68	retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]	[more]
TYK27885.1	2.6e-06	56.86	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
KAA0043328.1	3.3e-06	63.41	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040839.1	2.2e-05	54.72	uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of Spg031169 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg031169 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFG5	5.5e-07	73.68	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SJY0	7.2e-07	73.68	Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa...	[more]
A0A5D3DX33	1.2e-06	56.86	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5A7TKJ4	1.6e-06	63.41	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023...	[more]
A0A5A7THR9	1.0e-05	54.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg031169 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031169.1	Spg031169.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding