Spg031119 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031119
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold8: 30651223 .. 30656552 (-)
RNA-Seq Expression	Spg031119
Synteny	Spg031119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGCCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCTTCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAAGGGTTCAGAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAGTTCAGAGTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCAAGTCTGAAGACCGAAGACTCTCTGCAATCCATAAATTCGAGTGTTGAACAATCCTTGAAGACCAAAGACTCTTCAAGACTTCAACACTCCTTGAAGATCAAACACTCTTCAGGACATCAACGGCTTCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTCAGGGCATCAACACTTCTTGAAGACTGAAGACTCCTTCAAGACTGGAAGACTTCAAGCTCCAAGAATTTATTAAAGCGTCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATTCACACACAAGAGAGAGAATCAGAGGATTAACATTAGAGATTGTACACCCACACGCATACAAACATCAATAAAATATCTTGTTTATTCCACATGTCTCCATCTCCGAAGTTACGTGCGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTTTCATCTCTCTCTCTTATCTCAAAACACAAGTGTAAACATGTCGTTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACAATAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAGATTGAGAATCGACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAAGGGACCTACTAATCAAGCAGTTTGTTCGAACACTTAAAGGAAATGCTTTTAACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAGGGTGAGCTTGTTGTTAACTATATAAATCGTTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCAGTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCATTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACACGAGGAAAGAAGGAAGGAACGATGAAGAGACTGTAGAAGAATCAATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCAAAAGAAAAACGACAAACAAATAGAACGCATCACTTAACTTTAAACGAAAGACAGAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAGAGTCGATGATCCCAAGTACTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCGAATCATGCTACAGTCAAAGGAAAGGACAAACATAAAAAAAAGAAGAGTCTCAAGAAGCTTCAATCTAAGAGGTAGAGAAGTAAAGAGTTTTCTCAACCTCGACAACCAGTGATTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAATTATGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGCCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGACGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTAATTATCCTGACCAATCCTACAAGTCAAGGATTTGATCAAGACCATGATGAAGATAAGAGCTTTTATAATGTAAGAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTAAAAACAAAAAAAAAAAGGTGCATGACAATACAAATTGAAGAAATTCTTTAGTACTAGGGGCAATACAACAAATTGAAGTTGTACACCGTTATAAATATGAAGCTACGAGTTGAACGAATAAAAGAAGATTTCATTCCTCCAAATTCAACGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGTTCCCGCTTCTTCAAGTTCGAAGGTTCTCACACGCTTCGTTGCAGTTCCTTCTTTTCAATTTTGAAGGTTCTCACGCGTTTCGTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCATTTTGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTGACGCACTTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCAGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTACGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTGACGCAATTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCAAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTTCTTCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGTAGTTCCTTCTCTCCAAGTTTGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCATTGTTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACTGTTTTGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCACTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACATGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCACACGTTGCGCTGGTCCTTCGCCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTTGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGTTGCCCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAATTCGAAGGTTCACACGCTGTGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTTCTTCTTTAAGTTTGAAGGTTCCCATATTGCGATGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGTTACGCTACCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTGCTTATCTTTCTCCAAATTTGA

mRNA sequence

ATGGTTGAGCCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCTTCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAAGGGTTCAGAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAGTTCAGAGTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCAAGGGGCATATACTAATGACAAATTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAGATTGAGAATCGACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCAGTGATTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAATTATGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGCCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGACGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCTCACGCGTTTCGTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCATTTTGCTGCAGTTCCTTCTCTCCAATTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCAGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTACGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCAAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTTCTTCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCATTGTTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACTGTTTTGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCACTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACATGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCACACGTTGCGCTGGTCCTTCGCCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTTGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGTTGCCCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAATTCGAAGGTTCCCATATTGCGATGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGTTACGCTACCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTGCTTATCTTTCTCCAAATTTGA

Coding sequence (CDS)

ATGGTTGAGCCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCTTCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAAGGGTTCAGAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAGTTCAGAGTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCAAGGGGCATATACTAATGACAAATTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAGATTGAGAATCGACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCAGTGATTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAATTATGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGCCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGACGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCTCACGCGTTTCGTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCATTTTGCTGCAGTTCCTTCTCTCCAATTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCAGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTACGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCAAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTTCTTCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCATTGTTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACTGTTTTGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCACTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACATGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCACACGTTGCGCTGGTCCTTCGCCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTTGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGTTGCCCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAATTCGAAGGTTCCCATATTGCGATGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGTTACGCTACCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTGCTTATCTTTCTCCAAATTTGA

Protein sequence

MVEPKTDKAQAQVVRPESHQGPSSENSINRGVLLHFKGSEILDSSEILHSHKDKSSEFQSSQAEPENSERLHQGAYTNDKFIVKYNPLFEPDSDIVTVMMTETRTMEERMAEMQEHINTLMKAVEEKDSQIAQLKSQIENRHIAESSQTQRSKEFSQPRQPVIAKELFSKTFHKKEEGNYVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLTRFVAVPSPSSKVLTHFAAVPSLQFLLPKFEGPYTVRYCVVPSPSSKVLRCTLQRCSFSKFEGSQLYDCYVVPPPSAKDLMLCVAALFPLLSSSKFLTRYVAVPSPKVRRFSRCFAAVPSPQVRRFSRASLQFLLPKFEGPYTVRYCVVPSPSSKVLRCTLLRCSFSKFEGSQLYDCYVVSSPSAKDLMLCVAALFPLLSSSKFLTRCVAVPSPKVRRFTHFAAVHSLKFEGSHAASLFTRCAVPSPNSKVLTLRCFLLQVRRFSCYARLHCCATSFFKFEGSHIALLCCFLLQVRRFSRCAASFTKFEGSHAALFCCSFSKFEDSHALRCSSFSSSSKVHMLRCFFAKFEGSHVALVLRQIRRFSRCAASFSKFEGSHATLGCTVVLLPSLSLKVPTLRCCAASFSKFEGSHVALLPSPSSKVLTLRCFAVPSPSSKILMRFVAVPSLQVRRFTRCAASSPSSKIHTLPCSFTKFEGSHAALFPSPNSKVPILRCCAASFSKFEGSYATLLPSPNSKVLRCTVTLPVQSLSKFEGSDATLLPSPRSKVLVLRCLLIFLQI

Homology

[Close]

BLAST of Spg031119 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-36
Identity = 97/188 (51.60%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 151 RSKEFSQPRQPVIAKELFSKTF---HKKEEGNYVTSYCIDV----------EEVDNSEKG 210
           + ++F QPRQ +   E F ++F   H KE       +   +          EEVDNS + 
Sbjct: 412 KDEDFLQPRQSITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEI 471

Query: 211 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFST 270
           +QRTSVFDRIKP TTR SVFQR+S+   EEE+QC  ST TR SAF+SL +STSKK + ST
Sbjct: 472 KQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPST 531

Query: 271 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLT 326
           S FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMKR  SV INTEGSL V  
Sbjct: 532 SAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLIVKP 591

[Close]

BLAST of Spg031119 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 6.1e-35
Identity = 105/231 (45.45%), Postives = 138/231 (59.74%), Query Frame = 0


Query: 125 EEKDSQIAQLKSQIENRH----IAESSQTQRSKEF-------------SQPRQPVIAKEL 184
           +E+ +   Q KS    +H    I+   + +R+K+               QPRQ +   E 
Sbjct: 26  KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDCLQPRQSITLAEF 85

Query: 185 FSKTF---HKKEEGNYVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRP 244
           F ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 86  FPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 145

Query: 245 SVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFSTSVFDRLKVTNDQPKRKM 304
           SVFQR+SMA  EEE+QC  ST  R SAF+ L +STSKK + STS FDRLK+TNDQ +R+M
Sbjct: 146 SVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 205

Query: 305 DNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLTRFVAVPSP 326
            +L+ K F E N+D+K+HS +PSRMKR  SV INTEGSL V  RF+   +P
Sbjct: 206 KSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNP 256

[Close]

BLAST of Spg031119 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 6.1e-35
Identity = 94/188 (50.00%), Postives = 124/188 (65.96%), Query Frame = 0


Query: 151 RSKEFSQPRQPVIAKELFSKTF---HKKEEGNYVTSYCIDV----------EEVDNSEKG 210
           + ++F QPR+ +   E  S++F   H +E       +   +          EEVDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 211 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFST 270
           +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+ L +STSKK + ST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 271 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLT 326
           S FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKR  SV INTEGSL V  
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Spg031119 vs. NCBI nr
Match: TYK27425.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-34
Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 151 RSKEFSQPRQPVIAKELFSKTF---HKKEEGNYVTSYCIDVEEVDN----------SEKG 210
           + ++F QPRQ +   E   + F   H +E       + + + EVDN          S + 
Sbjct: 316 KDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEVDYSNEI 375

Query: 211 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFST 270
           ++RTS+FDRIKP TTR SVFQR+SMA  EEE+QC  S STR SAF+ L +STSKK + ST
Sbjct: 376 KKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTSKKDRPST 435

Query: 271 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLT 326
           SVF+RLK+TNDQ +R+  +L+ K F E N+D+K+HS +PS MKRT SV INTEGSL V  
Sbjct: 436 SVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTEGSLTVKP 495

[Close]

BLAST of Spg031119 vs. NCBI nr
Match: KAA0062458.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-34
Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 151 RSKEFSQPRQPVIAKELFSKTF---HKKEEGNYVTSYCIDVEEVDN----------SEKG 210
           + ++F QPRQ +   E   + F   H +E       + + + EVDN          S + 
Sbjct: 409 KDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEVDYSNEI 468

Query: 211 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFST 270
           ++RTS+FDRIKP TTR SVFQR+SMA  EEE+QC  S STR SAF+ L +STSKK + ST
Sbjct: 469 KKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTSKKDRPST 528

Query: 271 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLT 326
           SVF+RLK+TNDQ +R+  +L+ K F E N+D+K+HS +PS MKRT SV INTEGSL V  
Sbjct: 529 SVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTEGSLTVKP 588

[Close]

BLAST of Spg031119 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-36
Identity = 97/188 (51.60%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 151 RSKEFSQPRQPVIAKELFSKTF---HKKEEGNYVTSYCIDV----------EEVDNSEKG 210
           + ++F QPRQ +   E F ++F   H KE       +   +          EEVDNS + 
Sbjct: 412 KDEDFLQPRQSITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEI 471

Query: 211 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFST 270
           +QRTSVFDRIKP TTR SVFQR+S+   EEE+QC  ST TR SAF+SL +STSKK + ST
Sbjct: 472 KQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPST 531

Query: 271 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLT 326
           S FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMKR  SV INTEGSL V  
Sbjct: 532 SAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLIVKP 591

[Close]

BLAST of Spg031119 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.0e-35
Identity = 105/231 (45.45%), Postives = 138/231 (59.74%), Query Frame = 0


Query: 125 EEKDSQIAQLKSQIENRH----IAESSQTQRSKEF-------------SQPRQPVIAKEL 184
           +E+ +   Q KS    +H    I+   + +R+K+               QPRQ +   E 
Sbjct: 26  KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDCLQPRQSITLAEF 85

Query: 185 FSKTF---HKKEEGNYVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRP 244
           F ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 86  FPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 145

Query: 245 SVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFSTSVFDRLKVTNDQPKRKM 304
           SVFQR+SMA  EEE+QC  ST  R SAF+ L +STSKK + STS FDRLK+TNDQ +R+M
Sbjct: 146 SVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 205

Query: 305 DNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLTRFVAVPSP 326
            +L+ K F E N+D+K+HS +PSRMKR  SV INTEGSL V  RF+   +P
Sbjct: 206 KSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNP 256

[Close]

BLAST of Spg031119 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.0e-35
Identity = 94/188 (50.00%), Postives = 124/188 (65.96%), Query Frame = 0


Query: 151 RSKEFSQPRQPVIAKELFSKTF---HKKEEGNYVTSYCIDV----------EEVDNSEKG 210
           + ++F QPR+ +   E  S++F   H +E       +   +          EEVDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 211 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFST 270
           +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+ L +STSKK + ST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 271 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLT 326
           S FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKR  SV INTEGSL V  
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Spg031119 vs. ExPASy TrEMBL
Match: A0A5D3DVW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001190 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.6e-35
Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 151 RSKEFSQPRQPVIAKELFSKTF---HKKEEGNYVTSYCIDVEEVDN----------SEKG 210
           + ++F QPRQ +   E   + F   H +E       + + + EVDN          S + 
Sbjct: 316 KDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEVDYSNEI 375

Query: 211 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFST 270
           ++RTS+FDRIKP TTR SVFQR+SMA  EEE+QC  S STR SAF+ L +STSKK + ST
Sbjct: 376 KKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTSKKDRPST 435

Query: 271 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLT 326
           SVF+RLK+TNDQ +R+  +L+ K F E N+D+K+HS +PS MKRT SV INTEGSL V  
Sbjct: 436 SVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTEGSLTVKP 495

[Close]

BLAST of Spg031119 vs. ExPASy TrEMBL
Match: A0A5A7V4E9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00430 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.6e-35
Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 151 RSKEFSQPRQPVIAKELFSKTF---HKKEEGNYVTSYCIDVEEVDN----------SEKG 210
           + ++F QPRQ +   E   + F   H +E       + + + EVDN          S + 
Sbjct: 409 KDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEVDYSNEI 468

Query: 211 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQSLGVSTSKKSQFST 270
           ++RTS+FDRIKP TTR SVFQR+SMA  EEE+QC  S STR SAF+ L +STSKK + ST
Sbjct: 469 KKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTSKKDRPST 528

Query: 271 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRTFSVLINTEGSLKVLT 326
           SVF+RLK+TNDQ +R+  +L+ K F E N+D+K+HS +PS MKRT SV INTEGSL V  
Sbjct: 529 SVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTEGSLTVKP 588

The following BLAST results are available for this feature:

BLAST of Spg031119 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040811.1	2.5e-36	51.60	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	6.1e-35	45.45	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	6.1e-35	50.00	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK27425.1	1.8e-34	49.47	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0062458.1	1.8e-34	49.47	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg031119 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg031119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TGM1	1.2e-36	51.60	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TQ06	3.0e-35	45.45	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7UI09	3.0e-35	50.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DVW2	8.6e-35	49.47	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V4E9	8.6e-35	49.47	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg031119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031119.1	Spg031119.1	mRNA