Spg031078 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg031078
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold11: 10499039 .. 10502489 (-)
RNA-Seq ExpressionSpg031078
SyntenySpg031078
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGGTTTGTGTCGATTTAATTTGGCCCTAATTTCAAATTCGAGATACCTCCACTCCTGGATTTTTCTTCCCTATGTGGTTGCTCTGTAGTTGAATTGTAGTGTAGATTTATTTGTTCATATCTTTTTTCTTCTTCTCTTTTCAGAAAAAACTTGTCTGCATATGTCGGGATCTCTTTGCATACCACCGTTAAAACGTTAATAACTAAGAGAGATAACAAAAAAATTTCATTTTCTCCCTTACTCTTTCTTACTTGTCAATATTTTAATGGGCCCTATCCCTACATACCGGTGTGCAGGCAAGTTTTGTTCTTTCTTCTCTCTATCCTCAATTTAATTTCAGAAATGGGAAAAAATTTCACTTTTAGTCCCCAAACTTTTATGAAACTAACATTTTAGTTCCTGAACTTTGATTTGTAACGATTTAGTCTTATACTTTCAATTTTGTAACGATTTAGTCCTATAATTTCAATTTTGTAACAATTTAGTCCTTAAATTTTAATAAGTAACAACTTAGTCCTTGTGTTTTCAAAATTGTAACAATTTAGTCTCTATAGTGAAAAATTAATGTAAAGATTATTAAAAAAATTTACCGAGGTAGATCAATAAACTAATTTAAAACCTAATATATTAATAAGCTACAAAGTTTAATCATTAAATAATAAAAATCGAGATTTAATTTTGACGAATATTTTTATGACGAGGATTAAATTGTTTCAAATTTAATGAAAGAGAGTGCGATTATGTCAATGCTTATGCTCCAAGATACATCAATCAAAAATGTTTTACTTTAAATTATAGATTTAATCTGTTGTCTTTATCTTTTCAGACAAAAACAAAAGATTGTTGTCCTTATTTAATTTATTAATCTATAATTAAAGGATCAATAAGCTAATAAATGCTTTAATTATGTCTCGTGTTCGTTACTATGGGTACTTAATATCGACCAAAAAAATTAAGTTTGAAATATATTTTGTTCATTTATTCTATCGCTATTCAATAGTTTCAAAGTGTGGGATGAAATGAACAACTTTAGAAATTTAAAGACTGGATTTATAATTAATATCGAAATATTGAAAGAAATTACAGGATTTTTATCAATACAGTTAAAAGATATAAATTTTGTCTATTGGCAAAATTGGGTTAGAAAATTAACGAGAAAAATTGTTACACCCCAGGTTTTATTTATCAACTAACCTAGCGACGTTATTAAAACTAATCGAGCACTCCGAAAATTTTAGCAACATAACAACATACATAAGACTAACCCAAAATTTTTTAAACACTGCTAAAACAAGAATAACACTTCTATAACATTTTCAATTACTCCACCAAACTTCAAACACACCATACGAGTCAGGTCTGGTATCAACAACTATCTAACCATAAACACAAGCTTAACAAACCTTACCGTTTATTTGAGACAAACTTAGGGTCTGTTTGGAATACCTTCTAGTTTAAGTGTTTTTCAATAATGCATTTTCTTTTAAACATTTTGTAAAAAAGTTATTTAGAATTTAAGCACTCATATGATTGGTTACATTTACTCATGAGTGTTTTTATACACAAGAAGTTACTATATACTAACAAACTCTTTTTAAAAATTTTGCTTTTAAGTGTTTTTCTCAAAATGGTTTATTTCTCAATCTCATTTTTTAATAAGTCATTTTTAATGATTGCCAAACACTAGAAATTTTTTTCAAATAGTTTTTTTTTTTCTAAATTAAACACTTGAAAAGTTAAACCAAACAAACCTTTAATTTTTATTAACTAAATGAGAAGATAGAGTTCAGTGTGTTTGGTTTAACTTTTCAAGTGTTTAATTTTGAAAATAAATCATTCTGAAAAAATTTATAGTGTTTGGCAACCACTAAAAATGACTTATTAGAAAACGAGATTGATAAATAAGTCATTTTGAGAGAAACACTTGAAACCAACTTTTTTAAAAAGACTTTTTAAGTAAACAATAACTTGTGTATAAAAACATTTGTGAGGAAATGCAACCAAACATATGAGTGTTTAAATTCTAAACAATTTTTATACAAAATGTTTTTTTAAAAAATGCATTATTAAAAACATTTAAATTAAAATGTATTCCAAACGGACTCTTCATTAAAATCAACACAACTAAGCCTAGAATTTCAACGAGAATAAATCCAGAACTAAACTAAATAGGACAAATAGTTGTCCAACCATAATAAGCAACATCTACACCATCCAAATGAAAATAAAAAGGGAAAACAACGTTAGCTAGTTATGGCCCCTCCTCATGCGCCTCCTCTACACAATCAAACAAACAACATGTTTTTCATGCGCAAACAACATGCTTTCTTAAAGCGGTAAACTAACAACATGCTCAAAAGCTAGTAAACGGCTTATTGTTGGGTTTTATGTCCTAAAACTCGTAGATAGTAAATGTACCTTTTGACCGAACATTAATAAAATGATGTATTATTCATTTCTCTGTGTTTGTATTGAGTAATCTTGTCTTATTAACCCTAATTCAATAAACTAAACATCCAAGGCTGATAGAATGAGGCTTGAACTAGTATGGGGATAAGATTGGGTACCTTATCCTGGTAACACTATGGATACGACCCGCTTTGTATTCTGATACAAACGTAATGATCCAACGCATTCATGTAGTTGACATGCGAGTGAGGGTATCCTGTGCAATGAGCTTGCATAAGACCGGACCGTGAAATAGTTAATCACTAACTATAACACCGTTAGTTAGCTTGGTTTCTATTTCACTAGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGATTATGGACTCCTGTCCGTGAGGGATTGTCTTTTGATTTGTACGGGTGAGAGTGGCCTGCACGTCGACTCAATAAGCCTATCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGAAATTCACTCCTTCCCGACTCTAGGGTAAGTAGAGGTGTGTTCTCTTAAGTGGTGTCTCCGGGTCTTTAACAATGGGCCCTGCCCTCTTTATGGCACGGGAGGCACTTCTGTTTGCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTAGCCCAGGGGTAAAACAGTAATTTGACCTAGCTGGGGTACGAACACATGTGAAGGGCTGACTTGCTGTTGATGGTCGATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAATTGTGGTTCTATAGTGGAGTGAACCACAGTTAA

mRNA sequence

ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGTATGGGGATAAGATTGGGTACCTTATCCTGGTAACACTATGGATACGACCCGCTTTGTATTCTGATACAAACGTAATGATCCAACGCATTCATGTAGTTGACATGCGAGTGAGGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGATTATGGACTCCTGTCCGTGAGGGATTGTCTTTTGATTTGGCTGACTTGCTGTTGATGGTCGATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAATTGTGGTTCTATAGTGGAGTGAACCACAGTTAA

Coding sequence (CDS)

ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGTATGGGGATAAGATTGGGTACCTTATCCTGGTAACACTATGGATACGACCCGCTTTGTATTCTGATACAAACGTAATGATCCAACGCATTCATGTAGTTGACATGCGAGTGAGGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGATTATGGACTCCTGTCCGTGAGGGATTGTCTTTTGATTTGGCTGACTTGCTGTTGATGGTCGATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAATTGTGGTTCTATAGTGGAGTGAACCACAGTTAA

Protein sequence

MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKPPPSECHKSRICFDETEMDEFLKDSRYGDKIGYLILVTLWIRPALYSDTNVMIQRIHVVDMRVRDDLGNLVSILSGLWTPVREGLSFDLADLLLMVDIRGHRNISAVRRVQLWFYSGVNHS
Homology
[Close]
BLAST of Spg031078 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida])

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-15
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 0 

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP----PPSECH--KSRICF 60
          MASLVLLLSEL+RHHNTNPDYWLT+PLPPPP PP    +V      P   C+  KSRIC 
Sbjct: 1  MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVAGKSLLPSERCYSNKSRICA 60

Query: 61 DETEMDEFLKDSR-YGDKIGY 75
          DET +DEFLK+SR  G  +G+
Sbjct: 61 DETVIDEFLKESRAIGTVVGH 81

[Close]
BLAST of Spg031078 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-09
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0 

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP-----PPSEC-----HKS 60
          MASL+LLLS+L+RHH+TNPDY LTLP PP   P S+  +        P S+C     +K+
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICFDETEMDEFLKDSR 68
          RIC DE  MDEFLK+SR
Sbjct: 61 RICADENVMDEFLKESR 77

[Close]
BLAST of Spg031078 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 44/81 (54.32%), Postives = 50/81 (61.73%), Query Frame = 0 

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLP-PPPPPPSACDAV-KPPPSECHKSRICFDETE 60
          MASLVLLLSELVRHHNTNPDYWLTLPLP P PPPPS+  AV K   S+C        +  
Sbjct: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPSSDSAVAKSLSSKC--------QNN 60

Query: 61 MDEFLKDSRYGDKIGYLILVT 80
          M       RY   I +  L++
Sbjct: 61 MSRSASMKRYYSLIPFFFLIS 73

[Close]
BLAST of Spg031078 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-09
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0 

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP-----PPSEC-----HKS 60
          MASL+LLLS+L+RHH+TNPDY LTLP PP   P S+  +        P S+C     +K+
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICFDETEMDEFLKDSR 68
          RIC DE  MDEFLK+SR
Sbjct: 61 RICADENVMDEFLKESR 77

The following BLAST results are available for this feature:
BLAST of Spg031078 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904495.11.3e-1562.96uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida][more]
KAE8651190.16.9e-0954.55hypothetical protein Csa_001669 [Cucumis sativus][more]
KAG6580906.11.5e-0854.32hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg031078 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg031078 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHI43.3e-0954.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1[more]
BLAST of Spg031078 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg031078.1Spg031078.1mRNA