Spg031068 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg031068
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Locationscaffold11: 10398197 .. 10403831 (+)
RNA-Seq ExpressionSpg031068
SyntenySpg031068
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTAACGAAGGTGCCTAATCGATTGTCAATTGTGGAATCGTCAAAACGGATTTCTTCATTGAGACTCTTTGTTTGCGTTCACCGGCGGCCATCAACCATTCACCGTCAGTAATTTGCTGGTTGTTGTCAACCCTTCTTTGTTTGGATGGGTGCAGAGGAGACGATTAAGACTCGCAGTTTTCCGACAGTTCAGACAGAGGCTTTGGCAACGAAGAGTCTGAGGGGAGAAGTGGCAAAGTTGAAGTCTGATGCACCGTCATTTAGTTCTGGAATTATTCGACTACATGTAAGCCTCTTTCAAACTTGAGACCTCTTTCAAATTGATCGATTCCGTTGTTTTTTATCTCTTCTCTGTATGTGGAGTGTCGTACTGCAACATGGTCGTAACATTTAAATGAGGGTGGGTTGGTTAATTTTATTTGATGCAGCACCTACTTTTGAGTGTTGAGATGTAGGTATTTCTTTTATTAACAAAGCAGAAGATGAGGGCATTGTGTGCGTGAGTTAAATGCAACCTGAGTAGCTTGTTTGTTTCTTGGAACTGTCTCCAATATGCATTTTTGACCGATTATACTTCTCTTCTACTCACTGATAAGTAACAATCTTGTAACTAACCATTGTTAAAAATTAAAATTTGACTCATTGAAGGGAGAGCTAATGCTTGTAGTTCTGTTAAGTTTGTGTGTTTGTGTATAGATAAAAGCAATCATAGAATTATTTTGGTTCAATTTTTTTTGGGATTTTGGTACTACGTTATTTAGTATGAAAAGTAATCGGTACTATATCTAGGTATCTTTATTTTTTATAAAATCAAATGTTCTTATAGTTCATCCTTTTAAATGTTGTCATTTTCTTTGCATATATGTAGGTATCTTGATTTTTTTGCTAGCTTATTAGAGAATCCTCGTGCCAAGGTACTAATTATTAATCAGGCCCTATTGTTGAATGAGGATGCTATCTAGTTGCTAATTAAAGTATCACATAGATGTTTAGATGACTTAGATACAGATGAAAGGCTAGATCCTGGGTGGAAATTTTCTACTAAATGTGGTTTTTCCTTACTCAACTGGTGCCTCCCTGTTTTCAAGTCATTTTTACTATTTTGCTACTCTACGCCATCACTTAAGCACATTGGGGGCTTTTCCTTACTCAGTTGTGCCTTTTTCTGGACAAGCAACCTGAGTTGAAAAGGGAATAATAACCCCTGTAATTAAAACATAAGATTCATAAGTTAGACTCTGCAAGACATCCTCGATTACAAGACATTTTTCTGGGATAATCTCCTTATTGGAATTTTAGCAAGTATTGGACGTTTGAATTCTATAGCAATGTGTTTAAGAGGGAACAATATAGGAATGTGTTTAAGGGTGTGTTTGGTATAACTTTTCAAGTGTTTAATTTTGAAAAAAAAAAAAAAGCATTTTGAAAAAATTTCTAGTGTTTGGCAACCACTAAAAATGACTTATTAAATAATGAGATTGAGAAATAAATCATTTTGAGATAAACACTTGAAAGCAATTTTTTTAAAAAAGGAGTTTTAAAGTATATGGTAACTTGTGTATAAAAACACTTATGAGGAAATGTAACCAAACATATGGGTGTTTAAATTCAAAACAATTTTTATTCAAAATGTTTAAATTAAAATGCATTCTTAAAAAACATTAAAACTAAAAGGTATTTCAAACGGACCCTAAGAGGATTTGCTTAACTTTTGTAACGTCCCTAATTTAAGATAAATTTCAAATTTCCTAAGTTGGAGTTAATTTGGAATTTAGAAGGAAATTTTCAAAATTTAAAGAATTTAAAATTAGTGGGAAAATATGATTTATCATCTTTGTGTTTTCTTAAAGGAAAAGGATGAAAGGTGGCATTTTTGTAAATATTTTGAAATTGGAGCAAAACCCTAAGCCTTCATTCTTTTTATTTAAAGCTGCACGGAGCCCGAGGAGAAGCCATGAAGCCAAGCCATCTTTCTTCTTCTTCCTTCTCTCCCTAAAACCCACGACCGGCAGCCTCCATTCCCTTCCTCTTCTTCGATTTCGACCAACCGTCTTCACCTCCCTCCACGACTCCTCCTCCGGCAAGCTCGGGACCACGACGGCGGCGCGCGTTCCTCCAGCAAGTTTCGCGACGGCAGCAGCGTTAGGAGACAGTTCTTGCAGTGTCTCGCTCGTTTTCTCTCCGGCAGTACAGCGGCGCGGCGCCGCGGCGCGACGGGTCTTCTCCTTTAGCAGCAGCTCGCGGTTCAGGTGGCGGTGTTGGTGTGCGGCTGCGGCGGTGCGACGCGATTTCCGGCGGCAGCAGTGTGTAGGTGGTTGCAACAAGGGTTGTTTTCCGGCGAACAACTGCTGTTGGGTAGTTTTCCAGCAAGATTCCGACACTTTTGGGCGATTTTCCTCCTTGGGTAAGTTAGATTGATGATTGTATGGGTTGATTTTAGCGTTTGGTTGAATACCCATTCAATTTTTGTTTGTTCTTCAAGCTTATTCTTCGTCTTTCTGGCGATTTCTAGTGTGGGTAAGTGAGATAAATCAAGCTTTGGTTAATTCAAGTATGTAGGAAGGTTACCCATTAATTTTCATCTTTGTTTTCAAGGTTCTCTTGGCATTGGGAGTTTTAATTATCGAATTGAAGCGATTTTGGGTTTCCGATCAGCCGCTAATTGGAGTTTTGTGAATCGCTTAGTTCAATTAAGAGCGAGATCGGCTTTGCTGGAACTAAATTCTCCTTTTAATTAAGGAGTTATAAGCCAAGGTAAGTGAACTTACTGTTGAGCTTTTTATTTGGGCGTGTTTGTTTGATTTTTCCAAAGTTCATTTTATGAATTGCTTGATTTCATATATGTTTTAAATATATTTATATTGTAAGCATCAAGTTTATTATTATTGTTTGCAATCGTTAATGGTTGTAATATTGAGTTGGTGGTCTCTTTAAAATTCCATTAAAGGAATGAGTTTAAAATTCCATTAAAGGAATTATTTATGAGTTTTATAAGTGTACATGAAATTGATGTACATTCAGAGTTGCCTACATAGGACTTAGAGACATGAAATTGATGTACCTAAGTTGAGGTTCGTGAAATTGACGACCTCGAGGTTTCATGAAATTGACGGCCTCCGTAGGAGACACATGAAATTGATGTGTATAGGATATGCATGAAATTGATGTATATCATCTTTCATTAGTAAGTTAAAATAAAGTTTAGAGCCACCAAAAGATATTTGTTGTTGATTTTTTTTAAAAATGTTTTTAAAGCGTGACCCAACCTCAACAGTAAGGTCACTTACTGAGTATTTAAAATACTCATTCTTTTCAAAAATATTTTTTTCAGGTAAAGACAAGGGCAGATGAAAGGCGATTGATGAGAATCCGATAGACAGCCATGAGAGGACCTGAATTTCATATTTTATTTTTCTTCCGCTTTAAGAACTCTGTTTTTCTTTACTTCAATTGTAAATTTGTTTTAAGAAAATTTCTAGAGGCCATGTACATTTATATTTTAGAAATTATTTAAGCATATTTAAAACCTTTGAAATTAGGGATCCCGAATAAAAGTTTTGTTTTAAAGTTTTTACTTAAATTAAGTGTTTATGTTTTAAAATATTTTTTTATTTATTTAAAAAGGCCTCCAAAGCATGCATTTTCGTAACGGTCCCTTAAAGGCTTATTAAGAAGTCGGGTCGTTACAATTTTATCATTGTTTTGACTTATTTTCTGCAGTACCATCGCAAGGGACTTTGGGGGAACACCATTGGGTAAGCATTTCTTATTCCTTTCATATTCTATAAAGCGCTACTCTTGATTTTTAACTATGCTTTATATAGATAATGTATGCATCTTTTATTCATTTATGAGCTATGGATGTAAGAAAATTTATTTTGCGATGTTCAAGTTCTTGTGAATGTGTTGAAAAATTAACTCAATAAGCGAACTTGATTCTAGATTTGAGAATTGCTGAAATTGTATAAATGAATTGGGAAGTCTGCAACCATTGTTTCATTATCTTGTTTTCTTTATTGGAATCTACTTCTTACTTGCTCACGCCCTTGTATTCTGAGTGTCTGAGAATGGTTTCAAAATCATTCTTTAACTAAGAACATATCCATTAAAAGAACAACTGAAAAGTGGTATGATATTATTATTCATTTTGAATCTAAGCTCATTTTATGTTATTTGAAGACGTAGGACTATCTCTAAAGTTGTAAGATATTATTATTCATGAGTTGGTTTTATTTTAGGATTCTCGTTTGGGAAGATGAGTTTAGTGATTTCCATGAATGTGAAAGAGCATCAAGCTAGATAGTTCTCTAATTATTGTCTATCTCTCTTGTTAATTTTTTATTTCATAACCAATGCTCCTAATCTTCTTCTCATTAAAAAAAAAAATGTCCTAATTTGTTTGCTATTTATAGCTGCTATAGTAAAGAAAATGAAGGCTGCCAAACTAGTAGCAGATAATGTTGAAGCTCTAGAGGGACTTGACACACTTGCAAATTTAGTCATCTTAGGAGAGGATGAGGCAATCCAGGCACTTGGCTAAGCCACTAAAAAGATATGTCTTAATCTGTTTGCTCAGGTGAAAAGTGTAATTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTCCTCCACTGAACTTCTATTTTATACATCAGTCAGAATTATTATGTTATTCTTTTTAAAATGTTTTCTTTTTTGGCTCAGGGCTAGCTCCTGAAATCTCAGAGGATCTTTACCGGTAAACAAAATCCTATTTCTAGGATCTTTTCCATTATTGTTTTTGCGAACTCGTGCATCCAACTCCAACCTTTTGGCCATCAGGTAAATACAAACTATGTTAACCTAAGTGGTATATTTAAGCTAACAATAAACTTTAATTTTCAGCAAGAACAAACAATGCTAAGAGGAAGCAAGGTTGCTTTTGCATAGGTGGGGCTTTCTTCTACTCAAGGTATCCACATATTTGAACCCCCAAGTAGAAGCTTGGCTCATAATTGAAAGTAAAATGCAAGATAACATATAAAAGCAACTTGAATTCATATTAAATAAAGAATTGAGTACAAAAAATTAACTTACAATTGAAAAGTAAAGGAAAAACAAGAACAACACTGCTGGAAATAAACGAATGCAAAACAGAAAGTACAAAAAGTAAAGACAAGACGATTGCAGATTTTCTCCTCTCTATCTAGCTTGCTCTTGTCCTCTTTCAAGGGGAGACAAACCTTTCTCTTCTACTTCTTTCAAATGGAAGAGCCGACATAGGCTGGAAAATCCGGAACTTGGAATGGTTACAAGATGAGAAGAGAAAAATGTAAAATCTATCCTACAAGCTCTCTTTGCTTCTTGCATCTTGGTCCCCTTTTATAGACCTTGGAAGGTGAGGTTGGTTGCCGAGATTAGTGTGAGAAGGTCTTGGAAGGTAAGAATCCATCATCTTCAGAGATTTGATACCAGATTGGAGATTTTCGGACGATTCTATGAAGATCTTGTGAATCTCGTTATTCTGTCGGAAAGCCCAGTTGCGGCTGCATATCGAGCGCATTTCCTTCTGGCTTTGACAAGTCTGTCTTCAGCTAGAGCTACTTTTCTTATATGGCTTGCGGGCGTATTTTGA

mRNA sequence

ATGGGTGCAGAGGAGACGATTAAGACTCGCAGTTTTCCGACAGTTCAGACAGAGGCTTTGGCAACGAAGAGTCTGAGGGGAGAAGTGGCAAAGTTGAAGTCTGATGCACCGTCATTTAGTTCTGGAATTATTCGACTACATGTATTTCTTTTATTAACAAAGCAGAAGATGAGGGCATTGTGTGCGAAAAGGATGAAAGGTGGCATTTTTGTAAATATTTTGAAATTGGAGCAAAACCCTAAGCCTTCATTCTTTTTATTTAAAGCTGCACGGAGCCCGAGGAGAAGCCATGAAGCCAAGCCATCTTTCTTCTTCTTCCTTCTCTCCCTAAAACCCACGACCGGCAGCCTCCATTCCCTTCCTCTTCTTCGATTTCGACCAACCGTCTTCACCTCCCTCCACGACTCCTCCTCCGGCAAGCTCGGGACCACGACGGCGGCGCGCGTTCCTCCAGCAAGTTTCGCGACGGCAGCAGCGTTAGGAGACAGTTCTTGCAGTGTCTCGCTCGTTTTCTCTCCGGCAGTACAGCGGCGCGGCGCCGCGGCGCGACGGGTCTTCTCCTTTAGCAGCAGCTCGCGGTTCAGGTGGCGGTGTTGGTGTGCGGCTGCGGCGGTGCGACGCGATTTCCGGCGGCAGCAGTGTGTAGGTGGTTGCAACAAGGGTTGTTTTCCGGCGAACAACTGCTGTTGGGTAGTTTTCCAGCAAGATTCCGACACTTTTGGGCGATTTTCCTCCTTGGTACCATCGCAAGGGACTTTGGGGGAACACCATTGGGTGAAAAGTGTAATTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCTCAGAGGATCTTTACCGACCTTGGAAGGTGAGGTTGGTTGCCGAGATTAGTGTGAGAAGGTCTTGGAAGGTAAGAATCCATCATCTTCAGAGATTTGATACCAGATTGGAGATTTTCGGACGATTCTATGAAGATCTTGTGAATCTCGTTATTCTGTCGGAAAGCCCAGTTGCGGCTGCATATCGAGCGCATTTCCTTCTGGCTTTGACAAGTCTGTCTTCAGCTAGAGCTACTTTTCTTATATGGCTTGCGGGCGTATTTTGA

Coding sequence (CDS)

ATGGGTGCAGAGGAGACGATTAAGACTCGCAGTTTTCCGACAGTTCAGACAGAGGCTTTGGCAACGAAGAGTCTGAGGGGAGAAGTGGCAAAGTTGAAGTCTGATGCACCGTCATTTAGTTCTGGAATTATTCGACTACATGTATTTCTTTTATTAACAAAGCAGAAGATGAGGGCATTGTGTGCGAAAAGGATGAAAGGTGGCATTTTTGTAAATATTTTGAAATTGGAGCAAAACCCTAAGCCTTCATTCTTTTTATTTAAAGCTGCACGGAGCCCGAGGAGAAGCCATGAAGCCAAGCCATCTTTCTTCTTCTTCCTTCTCTCCCTAAAACCCACGACCGGCAGCCTCCATTCCCTTCCTCTTCTTCGATTTCGACCAACCGTCTTCACCTCCCTCCACGACTCCTCCTCCGGCAAGCTCGGGACCACGACGGCGGCGCGCGTTCCTCCAGCAAGTTTCGCGACGGCAGCAGCGTTAGGAGACAGTTCTTGCAGTGTCTCGCTCGTTTTCTCTCCGGCAGTACAGCGGCGCGGCGCCGCGGCGCGACGGGTCTTCTCCTTTAGCAGCAGCTCGCGGTTCAGGTGGCGGTGTTGGTGTGCGGCTGCGGCGGTGCGACGCGATTTCCGGCGGCAGCAGTGTGTAGGTGGTTGCAACAAGGGTTGTTTTCCGGCGAACAACTGCTGTTGGGTAGTTTTCCAGCAAGATTCCGACACTTTTGGGCGATTTTCCTCCTTGGTACCATCGCAAGGGACTTTGGGGGAACACCATTGGGTGAAAAGTGTAATTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCTCAGAGGATCTTTACCGACCTTGGAAGGTGAGGTTGGTTGCCGAGATTAGTGTGAGAAGGTCTTGGAAGGTAAGAATCCATCATCTTCAGAGATTTGATACCAGATTGGAGATTTTCGGACGATTCTATGAAGATCTTGTGAATCTCGTTATTCTGTCGGAAAGCCCAGTTGCGGCTGCATATCGAGCGCATTTCCTTCTGGCTTTGACAAGTCTGTCTTCAGCTAGAGCTACTTTTCTTATATGGCTTGCGGGCGTATTTTGA

Protein sequence

MGAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAKRMKGGIFVNILKLEQNPKPSFFLFKAARSPRRSHEAKPSFFFFLLSLKPTTGSLHSLPLLRFRPTVFTSLHDSSSGKLGTTTAARVPPASFATAAALGDSSCSVSLVFSPAVQRRGAAARRVFSFSSSSRFRWRCWCAAAAVRRDFRRQQCVGGCNKGCFPANNCCWVVFQQDSDTFGRFSSLVPSQGTLGEHHWVKSVIGSKILRILKAHGLAPEISEDLYRPWKVRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYEDLVNLVILSESPVAAAYRAHFLLALTSLSSARATFLIWLAGVF
Homology
[Close]
BLAST of Spg031068 vs. NCBI nr
Match: XP_022972468.1 (isochorismate synthase 1, chloroplastic isoform X3 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-05
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALC 61
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC
Sbjct: 66  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQLPIQQHIKAIHWLC 125

Query: 62  AK 64
           ++
Sbjct: 126 SQ 127

[Close]
BLAST of Spg031068 vs. NCBI nr
Match: XP_022972460.1 (isochorismate synthase 2, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-05
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALC 61
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC
Sbjct: 66  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQLPIQQHIKAIHWLC 125

Query: 62  AK 64
           ++
Sbjct: 126 SQ 127

[Close]
BLAST of Spg031068 vs. NCBI nr
Match: XP_022972451.1 (isochorismate synthase 2, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-05
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALC 61
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC
Sbjct: 66  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQLPIQQHIKAIHWLC 125

Query: 62  AK 64
           ++
Sbjct: 126 SQ 127

[Close]
BLAST of Spg031068 vs. NCBI nr
Match: XP_023530898.1 (isochorismate synthase 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-05
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV 49
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL +
Sbjct: 69  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQL 115

[Close]
BLAST of Spg031068 vs. NCBI nr
Match: XP_022932292.1 (isochorismate synthase 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-05
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV 49
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL +
Sbjct: 63  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQL 109

[Close]
BLAST of Spg031068 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-06
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 259 VKSVIGSKILRILKAHGLAPEISEDLYRPWKVRLVAEISVRRSWKVRIHHLQRF 313
           VKSV GSKILRILKAHGLAPEI EDLY   K      +S+R+       HL+RF
Sbjct: 63  VKSVTGSKILRILKAHGLAPEIPEDLYHLIK----KAVSIRK-------HLERF 105

[Close]
BLAST of Spg031068 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-06
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 259 VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRL 318
           VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+
Sbjct: 63  VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRI 122

Query: 319 EIFGRFYE 325
               R+Y+
Sbjct: 123 HRLARYYK 130

[Close]
BLAST of Spg031068 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-06
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 259 VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRL 318
           VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+
Sbjct: 63  VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRI 122

Query: 319 EIFGRFYE 325
               R+Y+
Sbjct: 123 HRLARYYK 130

[Close]
BLAST of Spg031068 vs. ExPASy Swiss-Prot
Match: Q69UI2 (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117200 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-06
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 259 VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRL 318
           VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+
Sbjct: 63  VKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRI 122

Query: 319 EIFGRFYE 325
               R+Y+
Sbjct: 123 HRLARYYK 130

[Close]
BLAST of Spg031068 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-06
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 259 VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRL 318
           VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+
Sbjct: 63  VKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRI 122

Query: 319 EIFGRFYE 325
               R+Y+
Sbjct: 123 HRLARYYK 130

[Close]
BLAST of Spg031068 vs. ExPASy TrEMBL
Match: A0A6J1IA15 (isochorismate synthase 1, chloroplastic isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471007 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-06
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALC 61
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC
Sbjct: 66  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQLPIQQHIKAIHWLC 125

Query: 62  AK 64
           ++
Sbjct: 126 SQ 127

[Close]
BLAST of Spg031068 vs. ExPASy TrEMBL
Match: A0A6J1I605 (Isochorismate synthase OS=Cucurbita maxima OX=3661 GN=LOC111471007 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-06
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALC 61
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC
Sbjct: 66  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQLPIQQHIKAIHWLC 125

Query: 62  AK 64
           ++
Sbjct: 126 SQ 127

[Close]
BLAST of Spg031068 vs. ExPASy TrEMBL
Match: A0A6J1I8P4 (Isochorismate synthase OS=Cucurbita maxima OX=3661 GN=LOC111471007 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-06
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALC 61
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC
Sbjct: 66  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQLPIQQHIKAIHWLC 125

Query: 62  AK 64
           ++
Sbjct: 126 SQ 127

[Close]
BLAST of Spg031068 vs. ExPASy TrEMBL
Match: A0A6J1EW89 (Isochorismate synthase OS=Cucurbita moschata OX=3662 GN=LOC111438650 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-05
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV 49
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL +
Sbjct: 63  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQL 109

[Close]
BLAST of Spg031068 vs. ExPASy TrEMBL
Match: A0A6J1EW06 (isochorismate synthase 2, chloroplastic-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111438650 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-05
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 2   GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV 49
           GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL +
Sbjct: 63  GAVETMETRTFPAVPTVGLATENLRGLVAKLKSEKPAFSSGIIRLQL 109

[Close]
BLAST of Spg031068 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-07
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 259 VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRL 318
           VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+
Sbjct: 63  VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRI 122

Query: 319 EIFGRFYE 325
               R+Y+
Sbjct: 123 HRLARYYK 130

[Close]
BLAST of Spg031068 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-07
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 259 VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRL 318
           VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+
Sbjct: 63  VKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRI 122

Query: 319 EIFGRFYE 325
               R+Y+
Sbjct: 123 HRLARYYK 130

[Close]
BLAST of Spg031068 vs. TAIR 10
Match: AT1G74710.1 (ADC synthase superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 9.4e-04
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 6   TIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV 49
           T++TR+   V + A AT+ L   V++LKS  PSFSSG++RL V
Sbjct: 61  TVETRTMTAVLSPAAATERLISAVSELKSQPPSFSSGVVRLQV 103

[Close]
BLAST of Spg031068 vs. TAIR 10
Match: AT1G74710.2 (ADC synthase superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 9.4e-04
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 6   TIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV 49
           T++TR+   V + A AT+ L   V++LKS  PSFSSG++RL V
Sbjct: 61  TVETRTMTAVLSPAAATERLISAVSELKSQPPSFSSGVVRLQV 103

The following BLAST results are available for this feature:
BLAST of Spg031068 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022972468.11.6e-0553.23isochorismate synthase 1, chloroplastic isoform X3 [Cucurbita maxima][more]
XP_022972460.11.6e-0553.23isochorismate synthase 2, chloroplastic isoform X2 [Cucurbita maxima][more]
XP_022972451.11.6e-0553.23isochorismate synthase 2, chloroplastic isoform X1 [Cucurbita maxima][more]
XP_023530898.12.1e-0565.96isochorismate synthase 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022932292.12.1e-0565.96isochorismate synthase 2, chloroplastic-like isoform X1 [Cucurbita moschata][more]
BLAST of Spg031068 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462983.4e-0659.2640S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
P592234.4e-0648.5340S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592244.4e-0648.5340S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
Q69UI29.8e-0648.5340S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
Q69UI19.8e-0648.5340S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Spg031068 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IA157.8e-0653.23isochorismate synthase 1, chloroplastic isoform X3 OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1I6057.8e-0653.23Isochorismate synthase OS=Cucurbita maxima OX=3661 GN=LOC111471007 PE=3 SV=1[more]
A0A6J1I8P47.8e-0653.23Isochorismate synthase OS=Cucurbita maxima OX=3661 GN=LOC111471007 PE=3 SV=1[more]
A0A6J1EW891.0e-0565.96Isochorismate synthase OS=Cucurbita moschata OX=3662 GN=LOC111438650 PE=3 SV=1[more]
A0A6J1EW061.0e-0565.96isochorismate synthase 2, chloroplastic-like isoform X3 OS=Cucurbita moschata OX... [more]
BLAST of Spg031068 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60770.13.1e-0748.53Ribosomal protein S13/S15 [more]
AT4G00100.13.1e-0748.53ribosomal protein S13A [more]
AT1G74710.19.4e-0448.84ADC synthase superfamily protein [more]
AT1G74710.29.4e-0448.84ADC synthase superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.860.130coord: 258..279
e-value: 2.0E-5
score: 26.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg031068.1Spg031068.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
molecular_function GO:0008909 isochorismate synthase activity