Spg030899 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030899
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold11: 27110818 .. 27116340 (-)
RNA-Seq Expression	Spg030899
Synteny	Spg030899

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGGGGGTTGTATCACATAGTGTTACCAGGATAAGTTACCCAGTCTTATTCTTGTACTATAGACCTTTTAGGTTGTTACTTGAACATCGATCCCCGTATGTCCCCACATACTAGTTCAAGTTACATACAAACAACCTTGGATCTTAGTTTATTGGATTTGGGTCAAATTGTGTTATATTCAACAATAACATTTTATTGCAGAAACTTAATAACACTTTATTAAAACAAGTATACAATTTGTTTACATTCACTATCTACGAGTTTTAGATAGCAGCATTTTTGCATTTTATTCCGGGGGCGACAACAGCGTTTTCGTTTTCCAGAGAGTTCGGGGGCGACAGCAGCGTTTTCGCATTTTATTCCAGCGAGGCAGTGTTCTTTGGCGGTTTTTCTTCCGATTTCGCGTCTCCGTCTTCTCTGGTGAGGTGCCCGATCTTCGGCGGCAGGTGCTCGGGAAGGTAGCAGCAGCAGTGACCCCTTTTCTCGACTTTTCAGCGGCTGTAGCTCGTGGTTTCCGGTGGACAGCAGCAGCGTTTGATTGTCATTGGTATTTTTTGGCACGTTTTGAGCAGTGGGCATTTGAGTTTCAGAGTTTTTGAGCAGTTTTGGCTGTGGGAAGCGTTATTTAACAAGTTTTCCATGGATCGTGAGTCAATTTCGTTTCTTAAACAAAATACCCATGAGAGTTTGGCCTTGAATGTAGGCGTTCGTTGGAGTTGACTTTAAATCTTTGAATTAGGAGTAAATTTAGTTCTCAACCAGCAAGTATAGTTCCTGTTTGGGAGATCAATTAATCAATTAAGGTTGAGGTTGGCTTTGCTGAAATTAATTCAGAGTAGTTAAGATCGAGAATTTATAAGCCAAGGTAAGTGGCTTTATTGTTGAAATTTTTAATTGGGTGCGCGTGATTGATTTTCCAAAAATTCATGTGTTTTATGTGTTGTTTGGTTATGTATGCTTTTATAAAAAAATTGATGAAAGCATTAAGTTTAATTATTAATTCTTGCAATTGTTGATGTTTTGAAATCCATGAATTGGTGGCCTCTTAAAATTCCATTATATGTATGAGTTTTAAATGATTTATGAGTTTTCTTAAATTTTATAATTATACATGAAATTGATGTACACTCAGAGATGCCTACACAGGATTTAAAATAGCTTTGGACTCAATTGGTCTTAAAACATATAAATTATTCTCCATGTTTGCAGAGCAAACATCAATACCTCTTTTAGTTATGAACGCTTCATTAAAAGAAGAAGAATATTGAATAACCTTTTTCAATTAAGCAAGATATAGAAATCAAATTTCTTTTAATTTTAGGAACTATGTACACATTATTTAATATTATGTAACGTTCCTCCGAGAAGAATAATTTTATGTCTCCCACTGCAGTAGCCGATGACTTCTCCTGTTCCAACTTTTAGGGTCATCTCACCAGCTTGTAACTGTGTCCCGGAACTCATTCCTTGAAATGAAGAACATACGTGATCAGTGGCACCTTAATCGAGTATCCAGACTAAACTATCGTTTTCCACTATACACGATTCCAAGACTAATAAATCAGATTTTGAGTCGTGGATTATGTTCCTCTTGGCTAAGCAGTTTGCCTGAGGATGTTCCTCAGTTAAAACCATACCTAAATTGTTTGCCACGTGTTTTAAGTTTTTCTTAGTCCTATGTTTTTAACCGTTTAATTTGGCGTTCGAAAAAGCACATACATAATTCTAGGCTTGAAATTCTGGGCGTTCTACTAGATGCAATGAAAAACGTGCGTTCAAGGCTTGAAATTCAACAGTGTCTCGATGTTGTACCGTCTGGAGTTGTACTCTGCTTTTCGGCCAGGTGAGTCCTTCGTCTTCTTTCTTCAATTACAACTTAATAACAACTCTATTGATTCCCAAATTTATACAGACTCTTAAGCACACATATATGCCCATAAACATGCAGGCAATTACAACTTTAATCCATAAATTAAACACTAATTTGATGCCAAAACCATAATAAGTCCATTTTAGCTCACAAACTCACATCACATGCAAAAATCAACCCACCAAGCTAAAATTAAACGAAATTGACTGCCCAAATCATGCTCTGATACCAATTGAAGGAGCGTACGATACACTAGCAGAAGCGATTTGGATCGAAAGCACACAAATTTCTTTAATTTTAGAAACAAAAGCATGCACATAATGAACCGAAAAACAGAGCATATAAGAACCAACCTCTTTGGAGCTCGAATTCGTTCGGTTTGTAGGATAATTTTGAACACGATCAAGCTCGGGACAACCACCGTGATCTTTCCCGCTATCCTCCAGCCTTAAAACGTGTTGTGGGACACGAATTGGTGATGAGTTTTGGAAGGGAAGCTTGAAGAGTCAAGCTTGAATGAGAAAGAGAGAATTATGAGTTCAAGGAAGAAAATGCCCAACAATTTCTCTCAGATCCAGCCCCTCTCTTCAACCTTCTTGTTCTCATATATATGGAGTATCTCATGCATCAAGATACAACTCAATGGAAGGAGAAAAAGACAGCATGGTAATGGTGGGATTAGTCACATACGTCAGGTGCCATGAATGTGGAATTTACCTCCAAAATTTAAAGAAATTTTAAAAAACAAAAATTAAATTGATTTTTTCTAATTTCATTAATATAATGAATTTCAAAAATTCATTACTATTTAATTAAAATTTTTAATTAATTATAATCATTCAATTTAATATCAAATACCAAATTAAACGATCAATCCTAATACCTATCAATCCCAGTTTCGAATACGAATCTATTCATATCTAAACCACAATATGTATCGAATACATAGTATACCGGCAATATTTAAATCATAATTTAAATATTGCCGACTCTCTCTAATTATAGTTTAATTCTTAATTAAACAATTACGTTAATGATATAATATATAATTAACTCCTTAAATCGAATTCGAACATTTCAAATTCTTTCATCATATTGTTCTAAGGTTTATTCTGTATGAGCTAGCAGGGGGACCTAATGGACCTACAGATCATTGGCTCCAACGATCCGAGATTAACCGGCTAAAACTCTTTAACCCAGTTAACCAACATTCGTTAACTACCGGGACACTCCAATATAGCTCGATAGTTGCACTCTCATCACTGTAGATATATTTTTGTGCACCCGATATAACCATGCTTAGTAAGTCGACCCTTCACAGGTTGTTCGTAACTATAGTTGGGTCAAATGTCCGTTTTACCCCTGAAGTTACTTCTAGTTCCTTAAGTCCCACTGATCCTCTAATGAACAATTGATTTGTGGTCCAACATCCAAACCTAATACCTCTGGGCCAATGAGAGGGCGGGATCCCTTTATTCAAGTCCCAGAGTCAACACTTAAGGGAACAACCTTTCTGCTATCCCTAATTCGAGTAGGAGTGAATTTCGTCTTGTAGGACTACGTCCCCAGCTATCTTCCTAGTCTTATCCCCAAAATGGTAGGCTTATTGAGTCGACAATGATGAACCACTCTCACCCATGCAAATCAAAGGATAATCCCGAATAAACAAGAGTTCATAGTTAGCTTAGGATTAAGATCGAGTTACCTAGGTCATCACACTAAATAAGTCAGTTTCAACAGTAAACAACGTTATAAAGGAAAGTGACTTATTCCTTGGTCCTGGTCTTATGCAAACTCACTACTTAGGACGTCCCCACTCACATGTCTCCACATGGACGATTCAAGATCACATCATCTACACTAACTACAAAGTGGGTCGCGTCTCATAGTGTCCCTAGGATAAGGTACCCAGCCTTATCCCTATACTATAGACCATTTAGGCTATTACTTGAACTTGATCCACTTCTATGTCACTATAAAGTTCAAGTATTCATATTATATATCCATGGATCTTAGTTTATTGGATTTGGGTTTATATAACGTGCAATTTACTTATTTATTAACTTAAGTGAACAATAACTCGATAATGACTTTATCGAACAAGTATATTACTATTTGTTTCATTCACTATCTACGAGTTGTAGGGCACCAACTCCAACATTAGGCTCTAAGGCGCTTAATCTACATCAATTTTAGGATCTAAGCATGCTTGTACTTTCAACCAAAAACAGGGTATTGAGCACCTACCTCTTGTAGCTCAAAATTGAATCTTCTCGTGGGTTGTTCTTGTTCACCAATAGATCACGGACCACCGCTAGGATCTTTCCGGCTATTCTCCGGCCTTAAAACGGATTGTGGAATCCAATTGTGATGTGAATTGGGAGGGAAATGCTTGAGATTTCAAGCTATGGAGAGGATTGGAGTTTTTGACTTTGAGAGATCAATTTGGCAGCATTTCAAGTTGATCAACTCTGATTTTTCCCACCTCTTCAAGTCATACTTATAGAGGAATCCATGCATCATGGATTAAGGACAAGATGACGCCAAATTAAGTACAAATGAGGTGGGGATTAAGGTGTCTTTAGGTGGTTTAGTGCATGGATAGTCACCATGCACTCCACCTCCAAAAACTCTTTTAATTTTGATTTTCATAAAATCAATTTTAAACGAATTTCAAAATTAATTTAAATGAAACATAATTCTAATAATTAAATTTAAATAAAACTAATTTTAAATAATTAATCAAACAATTTAATTAATTATATTAATTTAATATAAAATATTAAATTAATAATTCACACCAATCCCGACTTCTCTCAAAACCTGATCTCTCAAACATGAATTACTATTCATGTGTAAAATATTTAAATCATATTTCAATACTTCTAACTCTCTCAAAATATAGTTTAATTCATAATTAAACCATTAAGTCAATAATATCGTATATAATCGACGTTAACTCCCTAAACCAAATTTGAAAAATTCAAACTCTTCCATCACACTGTTCTAAGGTTTAGTCAGATATGAGCTAGCAGGGTTACGTAATGGACCTATAGATCATGGATTCCAACGATCCAAGATTAACTGGCTAAACTCTTTAACCTAGTTAACCAACATTCGTTAACTACCGAGACACTCCACTATAGCCCAGTAGCTGCACTCCCCTCACTATAGATATATTTTTGTCCACTCGATATAACCATGATTAGTAAGTTGATCCTTCACAGGTTGTTCGTAACTACAGCTGGGTCAAATGTCCGTTTTACCCCTGAAGTTACCTCTTGTTCCTTAAGTCCTTTTGATTCTCTAATGAACCATTGGTTTATGGTTCAACCATCAAACCAAGTCCCCCTCAGGCCAATGAGAGGGTGAGGTCCCTTGTTCAAGACCCAAAGTCAACACTTAAGGAAACAACCTCTCTACTATCCCTAAAATGGGTAGGAGTGAATTCCGTCTTGCAGGATTATGTCCCCAGCTATCTACCCGATCTTATCCCCAAAATGGTAGGCTTATTGAGTCAATGAAATCTGGCCACTCTCAACCTTGCAGATCAAAGGATAATCCCGAATAA

mRNA sequence

ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGGGGGTTATAGCAGCATTTTTGCATTTTATTCCGGGGGCGACAACAGCGTTTTCGTTTTCCAGAGAGTTCGGGGGCGACAGCAGCGTTTTCGCATTTTATTCCAGCGAGGCAGTGTTCTTTGGCGGTTTTTCTTCCGATTTCGCGTCTCCGTCTTCTCTGGTGAGGTGCCCGATCTTCGGCGGCAGGTGCTCGGGAAGGTAGCAGCAGCAGTGACCCCTTTTCTCGACTTTTCAGCGGCTGTAGCTCGTGGTTTCCGGTGGACAGCAGCAGCGTTTGATTGTCATTGGCTTGAAATTCTGGGCGTTCTACTAGATGCAATGAAAAACGTGCGTTCAAGGCTTGAAATTCAACAGTGTCTCGATGTTGTACCGTCTGGAGTTGTACTCTGCTTTTCGGCCAGGTTGTTCGTAACTACAGCTGGGTCAAATGTCCGTTTTACCCCTGAAGTTACCTCTTGA

Coding sequence (CDS)

ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGGGGGTTATAGCAGCATTTTTGCATTTTATTCCGGGGGCGACAACAGCGTTTTCGTTTTCCAGAGAGTTCGGGGGCGACAGCAGCGTTTTCGCATTTTATTCCAGCGAGGCAGTGTTCTTTGGCGGTTTTTCTTCCGATTTCGCGTCTCCGTCTTCTCTGGTGAGGTGCCCGATCTTCGGCGGCAGGTGCTCGGGAAGGTAGCAGCAGCAGTGACCCCTTTTCTCGACTTTTCAGCGGCTGTAGCTCGTGGTTTCCGGTGGACAGCAGCAGCGTTTGATTGTCATTGGCTTGAAATTCTGGGCGTTCTACTAGATGCAATGAAAAACGTGCGTTCAAGGCTTGAAATTCAACAGTGTCTCGATGTTGTACCGTCTGGAGTTGTACTCTGCTTTTCGGCCAGGTTGTTCGTAACTACAGCTGGGTCAAATGTCCGTTTTACCCCTGAAGTTACCTCTTGA

Protein sequence

MQTHCIGYPHSHVYYMDALDQYVCIKYKGGYSSIFAFYSGGDNSVFVFQRVRGRQQRFRILFQRGSVLWRFFFRFRVSVFSGEVPDLRRQVLGKVAAAVTPFLDFSAAVARGFRWTAAAFDCHWLEILGVLLDAMKNVRSRLEIQQCLDVVPSGVVLCFSARLFVTTAGSNVRFTPEVTS

Homology

[Close]

BLAST of Spg030899 vs. NCBI nr
Match: TYJ98643.1 (hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MQTHCIGYPHSHVYYMDALDQYVCIKYKG 30
          MQTHCIGYPHSHV YMDALDQ VCIKYKG
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYKG 29

[Close]

BLAST of Spg030899 vs. NCBI nr
Match: KAA0047449.1 (hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MQTHCIGYPHSHVYYMDALDQYVCIKYKG 30
          MQTHCIGYPHSHV YMDALDQ VCIKYKG
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYKG 29

[Close]

BLAST of Spg030899 vs. ExPASy TrEMBL
Match: A0A5A7U1U5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00520 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MQTHCIGYPHSHVYYMDALDQYVCIKYKG 30
          MQTHCIGYPHSHV YMDALDQ VCIKYKG
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYKG 29

[Close]

BLAST of Spg030899 vs. ExPASy TrEMBL
Match: A0A5D3BHA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00280 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MQTHCIGYPHSHVYYMDALDQYVCIKYKG 30
          MQTHCIGYPHSHV YMDALDQ VCIKYKG
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYKG 29

The following BLAST results are available for this feature:

BLAST of Spg030899 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98643.1	2.7e-06	93.10	hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa]	[more]
KAA0047449.1	2.7e-06	93.10	hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa]	[more]

BLAST of Spg030899 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030899 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1U5	1.3e-06	93.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BHA6	1.3e-06	93.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg030899 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030899.1	Spg030899.1	mRNA