Spg030888 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030888
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold11: 25469132 .. 25469818 (-)
RNA-Seq ExpressionSpg030888
SyntenySpg030888
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATAATTTTAAAGAAGCATAACCATTCAAACCTAAAAAGGTATGGCAATCTCGAAGCTTTTTACGGTGTCCATTGTTGTCTTGCTGATATTCGTTGGTTTTGTTTCATCAGGTATGTTCTTATCTCACAACCCTTCTAATTCCATAATGTTTTGTTGTTTTTGCTAAAACAGAATGATTAATAATGTTAATCTTTGTTCATATGACAGAAAACGAAAAAGACACGTTCATGAATTGTGTTCGACCATGTTCTGACACTTACGATGATGATTCATGTTATGATGATTGTGTCCGACAGAACAAAGCTGGTGCTGGATTTTGTTTTCCCAAGTTATCTGATGGCATTTCTAATGAAAAGGATTGTTGTTGCAGTAATTGATCCAGCAAAGAGACATTTTAGTATCTCAATAAGATTGTTTAACCATTATCCAAAACTGTTCAATGAAATTATAGTACATTATCTCTTTTTAATTAGCTTCACTATATTTTTCTCTAGGACAACCAATAAGTGTTACATCAAAAATATTAAGAATGGAGAACCAATTAGCAAATAAAATGAAGTAACAGTTGTTGCTATGGGTTTGAGATGCAGAGTGGTCGACTTTGTTTCTAAGAGGGGAAAATGAAGTTGCCACCGGTCTTGAATTAGAGGGTGTAGAGGTCTTTTGTGTATGGAGAATGTATTAG

mRNA sequence

ATGGCAATCTCGAAGCTTTTTACGGTGTCCATTGTTGTCTTGCTGATATTCGTTGGTTTTGTTTCATCAGAAAACGAAAAAGACACGTTCATGAATTGTGTTCGACCATGTTCTGACACTTACGATGATGATTCATGTTATGATGATTGTGTCCGACAGAACAAAGCTGGTGCTGGATTTTGTTTTCCCAAGTTATCTGATGGCATTTCTAATGAAAAGGATTGTTGTTGCAAGTGGTCGACTTTGTTTCTAAGAGGGGAAAATGAAGTTGCCACCGGTCTTGAATTAGAGGGTGTAGAGGTCTTTTGTGTATGGAGAATGTATTAG

Coding sequence (CDS)

ATGGCAATCTCGAAGCTTTTTACGGTGTCCATTGTTGTCTTGCTGATATTCGTTGGTTTTGTTTCATCAGAAAACGAAAAAGACACGTTCATGAATTGTGTTCGACCATGTTCTGACACTTACGATGATGATTCATGTTATGATGATTGTGTCCGACAGAACAAAGCTGGTGCTGGATTTTGTTTTCCCAAGTTATCTGATGGCATTTCTAATGAAAAGGATTGTTGTTGCAAGTGGTCGACTTTGTTTCTAAGAGGGGAAAATGAAGTTGCCACCGGTCTTGAATTAGAGGGTGTAGAGGTCTTTTGTGTATGGAGAATGTATTAG

Protein sequence

MAISKLFTVSIVVLLIFVGFVSSENEKDTFMNCVRPCSDTYDDDSCYDDCVRQNKAGAGFCFPKLSDGISNEKDCCCKWSTLFLRGENEVATGLELEGVEVFCVWRMY
Homology
BLAST of Spg030888 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MAISKLFTVSIVVLLIFVGFVSSENEKDTFMNCVRPCSDTYDDDSCYDDCVRQNKAGAGF 60
          MA  KLFTV  +V+++F  + +S  + D FM C+RPC D +DDDSCYDDCVR NK GAGF
Sbjct: 1  MASRKLFTVFAIVMMMF--YFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANK-GAGF 60

Query: 61 CFPKLSDGISNEKDCCC 78
          C+PKL   ++NEKDCCC
Sbjct: 61 CYPKL-PSVTNEKDCCC 73

BLAST of Spg030888 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-15
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 1  MAISKLFTVSIVVLLIFVGFVSSENEKDTFMNCVRPCSDTYDDDSCYDDCVRQNKAGAGF 60
          MA  KL TVSIV+L+I    VS+       +NCVRPCSDTYDD+SCY+DC+R+N  GAGF
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIREN-LGAGF 60

Query: 61 CFPKLSDGISNEKDCCC 78
          C+PKL    S +KDCCC
Sbjct: 61 CYPKLP---STDKDCCC 73

BLAST of Spg030888 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 1  MAISKLFTVSIVVLLIFVGFVSSENEKDTFMNCVRPCSDTYDDDSCYDDCVRQNKAGAGF 60
          MA  KL T+SIVVL+IF    S+       ++CVRPCSDTYDD+SCY+DC+++N  GAGF
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQEN-LGAGF 60

Query: 61 CFPKLSDGISNEKDCCC 78
          C+PKL    S +KDCCC
Sbjct: 61 CYPKLP---STDKDCCC 73

BLAST of Spg030888 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 31 MNCVRPCSDTYDDDSCYDDCVRQNKAGAGFCFPKLSDGISNEKDCCC 78
          M+CV+PCSDTYDD+SCY+DC+++N  GAGFC+PKL    S +KDCCC
Sbjct: 21 MHCVQPCSDTYDDESCYNDCIKEN-LGAGFCYPKLP---STDKDCCC 63

BLAST of Spg030888 vs. NCBI nr
Match: KAA0043464.1 (hypothetical protein E6C27_scaffold1167G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 0

Query: 1  MAISKLFTVSIVVLLIFVGFVSSENEKDTFMNCVRPCSDTYDDDSCYDDCVRQNKAGAGF 60
          M   KL  V + + ++   FV+  +E     NC+RPCS+TY   SCY DC   NK G G 
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTL-SEGQGLWNCIRPCSETYKSLSCYVDCGALNK-GTGA 60

Query: 61 CFPKLSDGISNEKDCCC 78
          C PK    +S+E  CCC
Sbjct: 61 CIPKRP--VSDEYVCCC 73

BLAST of Spg030888 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.9e-15
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 1  MAISKLFTVSIVVLLIFVGFVSSENEKDTFMNCVRPCSDTYDDDSCYDDCVRQNKAGAGF 60
          MA  KL T+SIVVL+IF    S+       ++CVRPCSDTYDD+SCY+DC+++N  GAGF
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQEN-LGAGF 60

Query: 61 CFPKLSDGISNEKDCCC 78
          C+PKL    S +KDCCC
Sbjct: 61 CYPKLP---STDKDCCC 73

BLAST of Spg030888 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 1  MAISKLFTVSIVVLLIFVGFVSSENEKDTFMNCVRPCSDTYDDDSCYDDCVRQNKAGAGF 60
          MA  KL T+SIVVL+IF   VS+       ++CVRPC DTYDD+SCY+DC+R+N  GAGF
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIREN-LGAGF 60

Query: 61 CFPKLSDGISNEKDCCC 78
          C+PKL    S +KDCCC
Sbjct: 61 CYPKLP---STDKDCCC 73

BLAST of Spg030888 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.3e-11
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 31 MNCVRPCSDTYDDDSCYDDCVRQNKAGAGFCFPKLSDGISNEKDCCC 78
          ++CVRPCSDTYDD+SCY+DC+R+N  GAGFC+PKL    S +KDCCC
Sbjct: 10 VHCVRPCSDTYDDESCYNDCIREN-LGAGFCYPKLP---STDKDCCC 52

BLAST of Spg030888 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 0

Query: 1  MAISKLFTVSIVVLLIFVGFVSSENEKDTFMNCVRPCSDTYDDDSCYDDCVRQNKAGAGF 60
          M   KL  V + + ++   FV+  +E     NC+RPCS+TY   SCY DC   NK G G 
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTL-SEGQGLWNCIRPCSETYKSLSCYVDCGALNK-GTGA 60

Query: 61 CFPKLSDGISNEKDCCC 78
          C PK    +S+E  CCC
Sbjct: 61 CIPKRP--VSDEYVCCC 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586428.12.3e-1659.74hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8651697.14.3e-1559.74hypothetical protein Csa_006343 [Cucumis sativus][more]
KGN61228.11.6e-1457.14hypothetical protein Csa_006463 [Cucumis sativus][more]
KAE8651701.12.4e-1065.96hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KAA0043464.12.6e-0441.56hypothetical protein E6C27_scaffold1167G00010 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHG97.9e-1557.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG51.0e-1458.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF55.3e-1168.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A5A7TJH11.3e-0441.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030888.1Spg030888.1mRNA