Spg030858 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030858
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L11
Locationscaffold11: 24863610 .. 24868476 (-)
RNA-Seq ExpressionSpg030858
SyntenySpg030858
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCGTCTTCTGATAGGAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAGTAAGTGAGACAGAGCAAGGTCTAGTTAAATTAAAATGAAAACACACTGAAAAATTGTTGTGTACATTGAAACACACTCCTTTTCGATTCCCTTTCGATTTCTTCAAAGCAACCTTGCCCCATCTACTCATTTTTCTTCGTCAATTTCCTAGGTTTGAAGAAACATGCTGAAATTTTTCTCTCCTTCGAAGCAAGAAAAGGGCACTGAGCTTGAAAATTTGTCTCCCCTTCGAAGAAACCCACATCAACGTCCCCTTCAACTTTAGGTAAATCCTCCTCTTGTTTTGGCCTTCACATCTTTGAGAATTTAAATGCATTGGAGTTTATTTCTTTTTTTACTATTGTTGAACTTCATTGTCATTGTGAGTATATGACAACTTTGAAAAAGAATTCAAAGGTGTTTGCATATGTGATATTGTGCGTTTTTTACAGTTTTGAAAAAGAAAAAGTCAGTATCAATATCTTTGAGAATTTAGAGGGCTTGAAGATGTGTCATTGTGAGTATTGCATGAGTGAGATTTTTCATTTTGCTACATTGCCATAGCTTTCCCCTTTCATTAGTTATACTTCAATATCTTAATTTGCTTACTAATTTCCATGTGTTTTCAGTTAACTACTTCCCATTTTACTCATTCAAGACAGGGCTATGGAAGAAACGACCTCTGATTACTCAATTTGCCCACCTCAGATTATTGCTTTTATATGCCTAGTTTTTTTTTTTTTTTCCATGTTTACTCTTACTTTAACCTTGCAAATGTCCTCTCTTATGGATAAATGATTGTGTGAAAAGCTTTATAAGTATTTAATTTAATATGGATTGGAGAAGAAAATGAACAAAAAGGAAATAAAAATCGCGTCTTATTAGGAGTTGGAAGTTGGGTGGGTAAATCTCTTCTGTCTATTACCTTAAAATTTGTATTGGGTCATGGAAAGAAAATAATAAAAGAAGGAGAAAACAGTGGAAGTTTTTTGAATTGAAGTCAAAAGAAGTGAGGATTCTTTTTTATTATTTTGTTCCAAAGTTAATGTATTGTGGTAGAAGATGTTTGGACTGATTTTCAGATGGATTGTTTTGTGGTCTTTCTTAATGATCTTTTTAGGATTTTAGGGGAATTTTGAGTGTGCTCAGATTTTCTCCACTTCCTTTTGCACCATGGTGATATGGGGTCTATGTTGAAAGATATACCTCGTTCTTATGTTTTTTATGTAAAAATATTAGTGAAGAACTAGTCTGATTGACGACTCTGGCTATGTTTAACTTAACATACAATTGTTTTTTGCTTCTTCTATTGTTTGTTTAACTTTGCTCGCATTGTTTGTAGTTACTCTCTATTTGTAGTGTGTCGTACATTTGGCTTCATGTTAAATACAATTCTCCTTCCTAATACGAAATTTTTAACATTTGAAGGATGAACTTGGGACCTAGACTATTACTAATGGTATGTTTTCTTACTCTTATTTTTGCAATCTTTGTAGAGCCAACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGTAAGCTTCAATATGCTAATTAATTGCAAAAAAAAAAAAAGTTTGTGATTCTTCTATATGAACTATGTTTGTTGTTTTCTTTTGCAATAACATTATATATGAAGTTGGACATGGTGGGTGGTTTTATCTTATTTCTAACATCAATTCTTCTAAATAGTTCAATGTCCTACTCTTGTTGATCAATTTCTTGTTCATAAAGAAGTCAAACTGCGAAATGACTTTAGAGTTTTACATCTTGTATTACAGCAAATTTTTAACTAATTTTTCCTATAACTTTTGGTCTGAAGTAATTCTTTTGTATAATAAACATTTAGAATCAAAACTAGTAACAATTAAAAGAGTATAAATTTTAAAAATACTTGGAACTCATTGGGTTATTATTAAGGAGTTTGATGTGAAATTTATTCACTATATCCAAGCGACTCATCCCATTTTGGTTAAAAATGTTGTTGCTGATAGTTGATTTGAGTGTTCAAATTAAGTGAATTTACAAGCTCTGTTTTTCTGCTAAAGAATTTAGGACATAATAAAACATTTTAATGTTTTTTTCTTATGAATTGAAAGTTGATAATGTCATTGCCAAATTATACTTTTACTTTCTTTTGTTTATTATTTGTAAGGTTTAAGTGATGGTGCTAACTCTTTAATAAATAAGGGCTACTCCAACTCCACAATGGAAACCCTTGCTTGAACCTTGCCAAATCCCTAGAAGTATGTTTCCAGTTGATTCGAAACTAGATCTTTTATTTGTCATTCTAACAAACAAATGGTATACTTTTTATTTGTGTTTCTTAACAATATTAAAAGGGAAGGAAAGGATTTTGTTACTACATCTTTTATTTTAACCTTCAATTTTAGGTAAGCAACTTTCGATCTTAATCTATCACTTTTACCATTGTCTAATTCTATGAACAAAAGTCAAAAGATAAAGTTTGAGTCATCTTAAATATTTTAAGAAACTAAAGTGTTCAATGCTAATGCAAAGGAGCTTCAAGGCATTATATTTCTTGAAGTTTGTCTAGGACAATTGGAAACCTCTGAAATCCCTATCGTCCATATTCGAGCATATCTAATTGTAAGTTCAAAATTGTTTCCATTCAAGTCTTACTTTCCTTATAATTTCATACATTTGCTTAGACTCTTACCATGTAGAAAAAAAAAATGAAATCTTGTTGAAATCATGGTGAAATTTATTTCTTTCTAAGATGATATGTCTTCCTCTTTCTTTGATTATTTTAGGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTCGTGCTCTTCAGTTTCTTCCTCATTACAAAAGAAATTCTAGTTAGAAAGATTTCAAAAGTTCTTTGACTGGTTTGATCACTTCAAGTCCGATAGTTTAAAAGTTTTTTTTTGGTGTTCTTTTTCAAAGCCTTTTGATGGATTTTCTTTTTAGAATATTTGTTTTCATTGAGATATTTTTCCCTTTTGTTTTCTTTGTTGTTCTTGTTTCACTCCCTTGTGGAGTTTGTATCCTTTGAGCATTAGTCTCTTTTCATTTATTCAATGAAATGTTTTGTTTTTTGTTAAAAAAAAAACTAAGATTCGTTCTTGATGGCAAATTTGATGAAGTGTCCATGGAGATGCTCTAACTTAGGAGTTGATGTGTCACTCATTTTGATGGATGTATGTGACTGTCATAAACTAATTTTGATAGGAGAATTTTATTTTCTTTGACAGTAGAATTTTGTTTTGACAACAATTCCATTTTAAGTAGTGAGTCAAGTGTCTTCAGCCTCAGTAACTTGTTCTTATTCCTTTGAAAAGAGTAAATCAGTTTCTTATTCTTTACCTATTAATTTTTTTGACAAGATATTCTTTACATGTTAATTCATAAAGATTTTAGTTTTCTTTCCTTGTATTTATGATTTTGATTGGTGGCCATTGAAGAATCATGTTGTCACCTAGATGGAACTATCAATTCTTTTACTTTTGATAAAATTGCTTGTGATTCAAAGTTAGAGTTATAGCCTTTGGTCAAAAAATAAATTGTAAATAGTTTTGAGAAATTTGTGTAAGCCTCATTGCATGATAAAGATTTTACAAAATTTTAAAGAGTGAGCTAGTAGTTATTGTAAATTGTTTTGAGAAATTTGCATAAGCCTCATTCCATATGTCCATTTACCATTTTACCCAAACTTACTTTGGAGTATTATTCAATTCTCTTTTGCATAAAGAAAATGTTGGGCGCCGCAGGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCATAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTGTGATTCTTAACAAGTTGTAGCAAATCGCTAGTTAAGCTCTAGAGGGATTTTCCCAAATAGTTTTGAAGTTATTTGCGTTCAATTCTTTGTCTTCTCCTAATGTTGTTCATTAGCTTTTCTTATCAACCATTCATGCAGAGCCCTAACTCCATTGTCTCCTTTACCGTGCGACAACATCGAATCTAAGAAGATCATCACTTGCGGCTAATAGCACTTGAAATTCTAGGTATTTGATTTAAGCAACCAATGGTGTATTTTTTTCTTTCTTATAACCTTTCCTTTGTTTAAACTTTTCCTCTTCACTCAATGCTAACAACCAATGGTGTATTTTAGCAACCAATGCTAGCACTTTTTGGTTTGATTCACCCGTGATCTTCCCATTGTTTTCTTTTTCTCTACTTTGATATTTACTCTTTAAGTGTTCTGGTTGCTTGTTCATTGATATAAGTGTTTTTGTTGTTTATATTTGTTTATTCTTAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACTTGTTGTATACTTCTCCATATGTTGCAAGTATTTTTATTTAAAAAAGGTTTCATTTACAAGTGCAACATGCATAGCTGGAAATACAAGATTAAATTGTTAACTAATAGGAGAATTTAATAAGTTTTTTGTTTTATGCCTTTGTTGAATTTAATAGGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAATCTTGTTAA

mRNA sequence

ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCGTCTTCTGATAGGAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAAGCCAACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGGCTACTCCAACTCCACAATGGAAACCCTTGCTTGAACCTTGCCAAATCCCTAGAAGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTCGTGCTCTTCAGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCATAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACTTGTTGTATACTTCTCCATATGTTGCAAGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAATCTTGTTAA

Coding sequence (CDS)

ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCGTCTTCTGATAGGAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAAGCCAACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGGCTACTCCAACTCCACAATGGAAACCCTTGCTTGAACCTTGCCAAATCCCTAGAAGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTCGTGCTCTTCAGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCATAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACTTGTTGTATACTTCTCCATATGTTGCAAGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAATCTTGTTAA

Protein sequence

MSLSNPTRFSLSPDRLLIGSSTAACRSHLCVARLVGHLGFVWVRANTKLLSQFLPFQGNSAVKPTLHLVLKLLDSTIESFLMSLDRKYSEDKIICYKATPTPQWKPLLEPCQIPRSDVLSCFVETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANTVVVELGETQLVVYFSICCKFVPDTSLILIFTSKPNICWTTESANGKSC
Homology
[Close]
BLAST of Spg030858 vs. NCBI nr
Match: NP_001132427.1 (60S ribosomal protein L11-1 [Zea mays] >ACF81262.1 unknown [Zea mays] >AQK93235.1 60S ribosomal protein L11-1 [Zea mays] >AQK93236.1 60S ribosomal protein L11-1 [Zea mays] >PWZ11945.1 60S ribosomal protein L11 [Zea mays])

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 123 VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT 171
           +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]
BLAST of Spg030858 vs. NCBI nr
Match: ACG31637.1 (60S ribosomal protein L11-1 [Zea mays])

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 123 VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT 171
           +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]
BLAST of Spg030858 vs. NCBI nr
Match: KAF3961778.1 (hypothetical protein CMV_013637 [Castanea mollissima])

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-07
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN-TVVVELG 177
           RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  N TV+ ELG
Sbjct: 139 RVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITVLGELG 187

[Close]
BLAST of Spg030858 vs. NCBI nr
Match: PKI44010.1 (hypothetical protein CRG98_035595 [Punica granatum])

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-06
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 0 

Query: 91  DKIICYKATPTPQWKPLLEP-CQIPRSDVL-------SCFVETTQARVRALQRCKSRIGI 150
           +KI CY      +   LLE   ++   ++L        CF    Q  +    +CKSR+GI
Sbjct: 65  EKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKCKSRVGI 124

Query: 151 QHKVIKEDAMKWFQVKYEGTLVDEVANT 171
           QH+V KEDAMKWFQVKYEG ++++  NT
Sbjct: 125 QHRVTKEDAMKWFQVKYEGVILNKSQNT 152

[Close]
BLAST of Spg030858 vs. NCBI nr
Match: XP_031104660.1 (60S ribosomal protein L11-like [Ipomoea triloba])

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-06
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++ +N
Sbjct: 139 RVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKASN 179

[Close]
BLAST of Spg030858 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 123 VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEV-ANT 171
           +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  ANT
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANT 181

[Close]
BLAST of Spg030858 vs. ExPASy Swiss-Prot
Match: Q0DK10 (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 123 VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEV-ANT 171
           +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  ANT
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANT 181

[Close]
BLAST of Spg030858 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-08
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Sbjct: 139 RVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]
BLAST of Spg030858 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-08
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Sbjct: 139 RVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]
BLAST of Spg030858 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-08
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDE 167
           RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++
Sbjct: 139 RVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176

[Close]
BLAST of Spg030858 vs. ExPASy TrEMBL
Match: B4FGL9 (60S ribosomal protein L11-1 OS=Zea mays OX=4577 GN=100193878 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 123 VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT 171
           +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]
BLAST of Spg030858 vs. ExPASy TrEMBL
Match: B6T3F4 (60S ribosomal protein L11-1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 123 VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT 171
           +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]
BLAST of Spg030858 vs. ExPASy TrEMBL
Match: A0A3L6DTL4 (60S ribosomal protein L11 OS=Zea mays OX=4577 GN=RPL11_5 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 123 VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT 171
           +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQNT 180

[Close]
BLAST of Spg030858 vs. ExPASy TrEMBL
Match: A0A218X0L8 (60S ribosomal protein L11-1 OS=Punica granatum OX=22663 GN=LOC116195605 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.2e-07
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT 171
           RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Sbjct: 139 RVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNT 180

[Close]
BLAST of Spg030858 vs. ExPASy TrEMBL
Match: A0A5B7BLB3 (Putative 60S ribosomal protein L11 OS=Davidia involucrata OX=16924 GN=Din_037394 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.2e-07
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCKSR+GIQH+VIKEDAMKWFQVKYEG ++++  N
Sbjct: 139 RVGRRRRCKSRVGIQHRVIKEDAMKWFQVKYEGVILNKSQN 179

[Close]
BLAST of Spg030858 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Sbjct: 139 RVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]
BLAST of Spg030858 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Sbjct: 139 RVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]
BLAST of Spg030858 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Sbjct: 139 RVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

[Close]
BLAST of Spg030858 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Sbjct: 129 RVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 169

[Close]
BLAST of Spg030858 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 129 RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN 170
           RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Sbjct: 139 RVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179

The following BLAST results are available for this feature:
BLAST of Spg030858 vs. NCBI nr
Match NameE-valueIdentityDescription
NP_001132427.13.9e-0760.4260S ribosomal protein L11-1 [Zea mays] >ACF81262.1 unknown [Zea mays] >AQK93235.... [more]
ACG31637.13.9e-0760.4260S ribosomal protein L11-1 [Zea mays][more]
KAF3961778.15.1e-0765.31hypothetical protein CMV_013637 [Castanea mollissima][more]
PKI44010.11.5e-0640.91hypothetical protein CRG98_035595 [Punica granatum][more]
XP_031104660.11.5e-0665.8560S ribosomal protein L11-like [Ipomoea triloba][more]
BLAST of Spg030858 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2YDY23.3e-0961.2260S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S... [more]
Q0DK103.3e-0961.2260S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2... [more]
P427952.8e-0860.9860S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2[more]
P427942.8e-0860.9860S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2[more]
P462878.1e-0863.1660S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1[more]
BLAST of Spg030858 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
B4FGL91.9e-0760.4260S ribosomal protein L11-1 OS=Zea mays OX=4577 GN=100193878 PE=2 SV=1[more]
B6T3F41.9e-0760.4260S ribosomal protein L11-1 OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A3L6DTL41.9e-0760.4260S ribosomal protein L11 OS=Zea mays OX=4577 GN=RPL11_5 PE=3 SV=1[more]
A0A218X0L87.2e-0766.6760S ribosomal protein L11-1 OS=Punica granatum OX=22663 GN=LOC116195605 PE=3 SV=... [more]
A0A5B7BLB37.2e-0768.29Putative 60S ribosomal protein L11 OS=Davidia involucrata OX=16924 GN=Din_037394... [more]
BLAST of Spg030858 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G42740.12.0e-0960.98ribosomal protein large subunit 16A [more]
AT3G58700.12.0e-0960.98Ribosomal L5P family protein [more]
AT4G18730.12.0e-0960.98ribosomal protein L16B [more]
AT5G45775.12.0e-0960.98Ribosomal L5P family protein [more]
AT5G45775.22.0e-0960.98Ribosomal L5P family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022803Ribosomal protein L5 domain superfamilyGENE3D3.30.1440.10coord: 112..167
e-value: 7.6E-6
score: 27.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030858.1Spg030858.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome