Spg030811 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030811
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like
Locationscaffold11: 26238597 .. 26241314 (+)
RNA-Seq ExpressionSpg030811
SyntenySpg030811
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGAGTGCCAAGAATCGACAATCCAACAATCAGTAATGGATCCAATAGAAGAGGAAGTAGAAGAACAAATACTTGTAGCATGTGTGCAGTAGAAGCCACAATAACAGGTTCAGATTTAGCAGTCTGAAGATGTGAATTAAGCAAATTAAGCAAATCCATTAACTGAGAATTTTGAGTAGAATTCAAGCTTGAAAAAAAATTCGGAGATAGAGGATGAAGCTTCAGGTGCCGTCGAAGAATGAGGCTTGTAACTAGGGGGATAACCGTGCAATTTGTAACATCGGTCAATAACAAAGCCACGAATTCCACAATGAGTACAAATTTGTGTTGATTCGAAGTCTCTTTCTTGCGAGAACGATCAGTAGGTGAAGAAGTCTTTTTGGTATTATCAACAGCAAAAAGAGTAACTGGATCTGGGGGAAGACTAAGAATACCAGCAGAGTGTTGATGTTCCTCTTAGATTATGAGAGAAAAAACAGTATTAACGTAGGAATCAATTTCATAAGGAGACAGGAGCATATGACTCATTTAATCCCATCAAGAAAGTCATGACATATTTAGAATCAAGATGCTCGATAAATGGCTTCAAACCGTCGCAAGTACACTCTGTAGTTGGCCTGTAATCAGTAAGATCTTGCAAATTGTTTTGAGTTTAGTGTTATAAGTCTCAACTGACATGATACCTTGTTGCAGTGTGACCAATTTCTTACGCATTTGGTAAATACTGGGGCCATTCAAATGCTTGAATTGATCGCACAATTCATCCCAAACTTCTTTGATAGATCCCTTATACACAACACTCGCGACAATATCCTTAGAAACCGAATTAAGAATCTAGGATGCAATGATATCATTGTTGCATTCCTAAGCCTCAAGTAAGGTTTCTTCAGTAGGTTTGGTGATCTTATTAGTTATTATGAAACCAGTCTTGTTCTTCCCCGATATGACCATACGCATTGCACGACTCCATGAAGTATAGTTAATCGTGCCAAGTAAAGGCTGAGTGACTGACGTAGAAGAAGATCCAAAGGAATGATGAAGAAAATAAGGATTCAACTGTCCCTCAATCGCTGTTGTAGTATCATCGCTTCCAATGCCCTTGTCCACCATGAGAGAAGTGAAACTTGGAAGAAGGTAGGAATGAAAAAGGAAAAGAGTAGGAGGCAGGATTGAAAAAGGAAAAACGGGAGGCAGGATCGAAAAAAGAACAAGAGCGAGAGCGAAAAAATTATGGCTAATGATACCATACAAAAGAGAGAGGTAAAAATGTAGATTCTCTTATTAATTGAAATAAGACCCTAGGGCTTCATATATACAAGCGATAAACTCAGAGAACTTAAATAACTGGAGATGCAGTTGTAAAAAATATATAACTCAACTAATAACAACCCTGGTTAAGTAACATAACCCAATAACAAGGGTATCCATAAGAGTAAGAGAAATTCATTCTTGGAATTCCAAATCATTAAGGTTTCTTCCATAGTTTAGGTCCCAAGAAGATTAGGTGGAATTCCAAACTTTAATTGCAGGAAAGCGTTTGAAACAACATATAATCAAGAGAAAAGGGCAGAGAGAGCTATAGTACCCCTCCAAGGGTTTTCTCAGTGCCTTTCATATTAGTTGCTCTTGAAGTCAATACTTCTTTCAGTTCGAAAGTGGCTTTCTAAGGGGTCTTTAGTTGTTTTGGTGGCAGCTTGACTGATCCACCAATCACCTTTGGAAACTCCATATTGTTTTTGCTAATTATCAATCTATTCATAAAGTTATGAATGGGCTTCAATGCCTATTGGACTTCAAAATTGTAGAAGAATGTAGAAGAGGCTGTAGAAGAGTGGAAAAGAGAAAAAAGAGGGGCTTCTTAGAGAAAGCTTTGTGACTATGGGGATGGACGCTGTTAAGAGAATGAAAGATTTGGTTTAAGATGGAGGTCATGGATTGGAAATTCTAACAAACAAACGTGGAGATTATCATCTGAAAATTGGAAGTGGAGGACATGCATTCTTTGCTCTTTAAACTATCTGGTTTTGGCCCAGTGGTCATAGGACAATTGGTGAACAATAATAGATGTTTCTTAAGAATGCTAATATCTCGCAAGTGTTTGACGTTAAATGTCATAAGATTAAATAACATTTTTTTTTGAAAGCTTGATTATGTGCTGAGATTTAGTGGATATGTGGTTGCAATATGCTTTATATTTTCGTTTTTGGTTAATGCAACTGATTATTTTTTCTTTTTGATCTGACAGACATGGGTGTTGAGAAAGTTGCTCGTCTAGATGGTTTGAGTGAGGCTCAGATCTCAAAGGCACTCGAAGACCTAGTTAAAGTTGGGGCATCCTGAAGGCGTAATGTGCTGTGCTGTTGTACTTGCAACAGACGTTAATAAATGCACAAGTGGAACTTCTGTTGAGATACTTTACTGTTTAGATTCTTTTCGCTCTGCTTTTTTGAGATTATTGCTCAAACATTCAGCTTGAGAAAACATGTTTCTGGTACGTATGTTTATTTGTTTATACGAATAGTTTCTCCGGGAGTTATTTTCATAATGGTCATAATGAGTTTCTCATTTTTCATAAAGAATCGACCGCATTAATTTCATAGAATTGGAGTTGGTAAACTTTTTTTTTTCTTCTTTTTCCTATCAAGGCTACGTTCTTCTTCGATGGTTTGGCAGCATGTGTGCATTCTTATACTATATTCGTATCTTCTATGTG

mRNA sequence

ATGATGAGAGTGCCAAGAATCGACAATCCAACAATCAGTAATGGATCCAATAGAAGAGGAAGTAGAAGAACAAATACTTGTAGCATGTGTGCAGTAGAAGCCACAATAACAGACATGGGTGTTGAGAAAGTTGCTCGTCTAGATGGTTTGAGTGAGGCTCAGATCTCAAAGGCACTCGAAGACCTAGTTAAAGTTGGGGCATCCTGA

Coding sequence (CDS)

ATGATGAGAGTGCCAAGAATCGACAATCCAACAATCAGTAATGGATCCAATAGAAGAGGAAGTAGAAGAACAAATACTTGTAGCATGTGTGCAGTAGAAGCCACAATAACAGACATGGGTGTTGAGAAAGTTGCTCGTCTAGATGGTTTGAGTGAGGCTCAGATCTCAAAGGCACTCGAAGACCTAGTTAAAGTTGGGGCATCCTGA

Protein sequence

MMRVPRIDNPTISNGSNRRGSRRTNTCSMCAVEATITDMGVEKVARLDGLSEAQISKALEDLVKVGAS
Homology
[Close]
BLAST of Spg030811 vs. NCBI nr
Match: XP_022152373.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-05
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMGVE+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGVERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. NCBI nr
Match: XP_038906356.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-05
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMGVE+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGVERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. NCBI nr
Match: XP_022932709.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita moschata] >XP_022972179.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita maxima] >XP_023539739.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita pepo subsp. pepo] >KAG6597722.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-05
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMGVE+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGVERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. NCBI nr
Match: KAG7029169.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-05
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38  DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
           DMGVE+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 70  DMGVERVARLEGLSEAQISKALEDLVKVGAS 100

[Close]
BLAST of Spg030811 vs. NCBI nr
Match: XP_004141152.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 9.6e-05
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMG+E+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. ExPASy TrEMBL
Match: A0A6J1IAR8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111470791 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMGVE+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGVERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. ExPASy TrEMBL
Match: A0A6J1DEP8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020121 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMGVE+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGVERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. ExPASy TrEMBL
Match: A0A6J1EXS5 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like OS=Cucurbita moschata OX=3662 GN=LOC111439176 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMGVE+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGVERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. ExPASy TrEMBL
Match: A0A5A7T2I6 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00030 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMG+E+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. ExPASy TrEMBL
Match: A0A0A0LDA2 (L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G845450 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMG+E+VARL+GLSEAQISKALEDLVKVGAS
Sbjct: 65 DMGIERVARLEGLSEAQISKALEDLVKVGAS 95

[Close]
BLAST of Spg030811 vs. TAIR 10
Match: AT5G47890.1 (NADH-ubiquinone oxidoreductase B8 subunit, putative )

HSP 1 Score: 42.4 bits (98), Expect = 1.7e-04
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 38 DMGVEKVARLDGLSEAQISKALEDLVKVGAS 69
          DMGVE+   LDGL+E QI KALE+LVK GA+
Sbjct: 65 DMGVERCVNLDGLTEPQILKALENLVKSGAT 95

The following BLAST results are available for this feature:
BLAST of Spg030811 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152373.17.4e-0593.55NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Momordica charanti... [more]
XP_038906356.17.4e-0593.55NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Benincasa hispida][more]
XP_022932709.17.4e-0593.55NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita mos... [more]
KAG7029169.17.4e-0593.55NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucurbita argyrosp... [more]
XP_004141152.19.6e-0590.32NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis sativus][more]
BLAST of Spg030811 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg030811 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IAR83.6e-0593.55NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like OS=Cucurbita m... [more]
A0A6J1DEP83.6e-0593.55NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Momordica charan... [more]
A0A6J1EXS53.6e-0593.55NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like OS=Cucurbita m... [more]
A0A5A7T2I64.7e-0590.32NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 2 OS=Cucumis melo var... [more]
A0A0A0LDA24.7e-0590.32L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8454... [more]
BLAST of Spg030811 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G47890.11.7e-0467.74NADH-ubiquinone oxidoreductase B8 subunit, putative [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030811.1Spg030811.1mRNA