Spg030801 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030801
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease H
Location	scaffold11: 24993862 .. 24995905 (+)
RNA-Seq Expression	Spg030801
Synteny	Spg030801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTTGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTAATGCATTGATAGAGTCTGATGATACAAACATCCCAACCTCCGAGGCACGCCCATGTGCTTCGTGTTGCATGTCTATCGGATTTTCTGATGAAGATTTGTTGCTAGGGTCAAAGCCACACAATAGACCTCTATTCGTCTCAGGATATATTCGAGAACAAAGGGTTAGCCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTTAATGGAGGAACTATCAAACAGTAAGTTAGTGATCCAAGGCTTCAATCAGGGTGGACAACGGGCAATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCCACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACCAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTTATCTGAAGAATGAAAACACAGGGGAAACCATACCTGCAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGATTTGGAGCCTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAGTGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGATGTTGAAATTTTGAAGGAAAGTTTCGCTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCCGAAGATGATCAGATAAAAGCGATCTTGCCTGACAGACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCAAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGGAAGAGCTGAGCTCTCTGCAACACAGAAGAAACTTCTAAAGAAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACTGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGGCCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTGCATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAAGATGCGATAA

mRNA sequence

ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTTGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCTAAAGAAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACTGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGGCCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTGCATTTTCAGCTCCGGAGATGCGATAA

Coding sequence (CDS)

ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTTGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCTAAAGAAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACTGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGGCCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTGCATTTTCAGCTCCGGAGATGCGATAA

Protein sequence

MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESAFSAPEMR

Homology

[Close]

BLAST of Spg030801 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-30
Identity = 85/161 (52.80%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 125  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 184
            +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 1039 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 1098

Query: 185  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 244
            T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   S  R SVFR
Sbjct: 1099 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFR 1158

Query: 245  RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESAFSAP 286
            RL+    +EEST      TRPSAF+RL V  +K   A  AP
Sbjct: 1159 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 1197

[Close]

BLAST of Spg030801 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-15
Identity = 54/133 (40.60%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 11  IEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDF 70
           IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V  E  +F
Sbjct: 569 IEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVHNEDMNF 628

Query: 71  FCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFS 130
               + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S     V  DLS F+
Sbjct: 629 SRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSKDLSRFN 688

Query: 131 IKDLLSLPQEAKS 144
           ++DLLSLPQE K+
Sbjct: 689 VEDLLSLPQETKT 701

HSP 2 Score: 144.4 bits (363), Expect = 1.5e-30
Identity = 85/161 (52.80%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 125 DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 184
           +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 201 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 260

Query: 185 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 244
           T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   S  R SVFR
Sbjct: 261 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFR 320

Query: 245 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESAFSAP 286
           RL+    +EEST      TRPSAF+RL V  +K   A  AP
Sbjct: 321 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 359

[Close]

BLAST of Spg030801 vs. NCBI nr
Match: XP_031737045.1 (uncharacterized protein LOC116402134 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-30
Identity = 84/161 (52.17%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 125 DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 184
           +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 414 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 473

Query: 185 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 244
           T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   +  R SVFR
Sbjct: 474 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFR 533

Query: 245 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESAFSAP 286
           RL+    +EEST      TRPSAF+RL V  +K   A  AP
Sbjct: 534 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 572

[Close]

BLAST of Spg030801 vs. NCBI nr
Match: XP_031737045.1 (uncharacterized protein LOC116402134 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-05
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 71  FCSPQP-ITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSF 130
           F  PQ  +TLA++ P+ FL   Q E  E V CH ++  E++ +P  S     V  DLS F
Sbjct: 3   FSRPQRLVTLADFLPKSFLCVHQDEDPEVVACHAINTTEEEIIPPRSLEREGVSKDLSRF 62

Query: 131 SIKDLLSLPQEAKS 144
           +++DLLSLPQE K+
Sbjct: 63  NVEDLLSLPQETKT 76

HSP 2 Score: 143.3 bits (360), Expect = 3.3e-30
Identity = 84/161 (52.17%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 125  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 184
            +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 1039 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 1098

Query: 185  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 244
            T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   +  R SVFR
Sbjct: 1099 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFR 1158

Query: 245  RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESAFSAP 286
            RL+    +EEST      TRPSAF+RL V  +K   A  AP
Sbjct: 1159 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 1197

[Close]

BLAST of Spg030801 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-15
Identity = 54/133 (40.60%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 11  IEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDF 70
           IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V  E  +F
Sbjct: 569 IEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVHNEDMNF 628

Query: 71  FCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFS 130
               + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S     V  DLS F+
Sbjct: 629 SRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSKDLSRFN 688

Query: 131 IKDLLSLPQEAKS 144
           ++DLLSLPQE K+
Sbjct: 689 VEDLLSLPQETKT 701

HSP 2 Score: 143.3 bits (360), Expect = 3.3e-30
Identity = 84/161 (52.17%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 125  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 184
            +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 1039 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 1098

Query: 185  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 244
            T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   +  R SVFR
Sbjct: 1099 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFR 1158

Query: 245  RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESAFSAP 286
            RL+    +EEST      TRPSAF+RL V  +K   A  AP
Sbjct: 1159 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 1197

[Close]

BLAST of Spg030801 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-29
Identity = 78/161 (48.45%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 125 DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 184
           D  S  I +   L   +  KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D+NHI
Sbjct: 251 DFKSLKIHEQPKL--SSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHI 310

Query: 185 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 244
           TV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E E +  Q T +  + S F+
Sbjct: 311 TVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQ 370

Query: 245 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESAFSAP 286
           RL++  +EE+    T   T+PSAF+RL++  +K      AP
Sbjct: 371 RLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAP 409

[Close]

BLAST of Spg030801 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-29
Identity = 74/142 (52.11%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 144 KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTS 203
           KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D NHITV+EVD  +EKE  +QRTS
Sbjct: 294 KKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTS 353

Query: 204 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVT 263
            F RI P VARA VF+RLS+ E + +  Q T +  R S F+RL++  +EE+    T   T
Sbjct: 354 TFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTT 413

Query: 264 RPSAFQRLNVPMRKEESAFSAP 286
           +PSAF+RL++  +K      AP
Sbjct: 414 KPSAFERLSITKKKNAQTPRAP 435

[Close]

BLAST of Spg030801 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.8e-29
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 0


Query: 144 KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTS 203
           KKLL++G+++P +RKGLGYKSPEP+RIT +GK KV D NHITV+EVD  KEKE   QRTS
Sbjct: 847 KKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDGQRTS 906

Query: 204 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVT 263
            F RI P VAR  VF+RLS+ E E +  Q T +  R S F+RL+M S++E+        T
Sbjct: 907 AFDRISPHVARTPVFERLSMTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQAWMTT 966

Query: 264 RPSAFQRLNVPMRK 278
           RPSAF+RL++  +K
Sbjct: 967 RPSAFERLSMAKKK 980

[Close]

BLAST of Spg030801 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.4e-02
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 4   SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPV 63
           S+EK  SIE+++EGW +V RRKK+K +  +KESR +R+ +R  K++K K KKK+++ K  
Sbjct: 411 SREKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFYRNYRRGNKAEKNKKKKKTQKLK-F 470

Query: 64  MEESEDFFCSPQPITLAEYFPRRFLDDSQ 93
            E      C     T  E  P R L++ +
Sbjct: 471 DENLGVVACHAINATEEESIPLRSLEEEE 498

HSP 2 Score: 136.0 bits (341), Expect = 2.6e-28
Identity = 74/142 (52.11%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 144 KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTS 203
           KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D+NHITV+EVD  +E E   QRTS
Sbjct: 589 KKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEYEGDSQRTS 648

Query: 204 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVT 263
            F RI P VAR  VF+RLS+ E E +  Q T +  R SVF+RL++  +EE+    T   T
Sbjct: 649 AFDRISPHVARTPVFERLSMTEAERKDHQSTSNLDRRSVFQRLTITFKEEKGICQTSMST 708

Query: 264 RPSAFQRLNVPMRKEESAFSAP 286
           +PSAF+RL++  +K      AP
Sbjct: 709 KPSAFERLSITKKKNAQTPRAP 730

[Close]

BLAST of Spg030801 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.0e-22
Identity = 64/139 (46.04%), Postives = 94/139 (67.63%), Query Frame = 0


Query: 4   SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPV 63
           SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+QK K KKK+R+ K +
Sbjct: 116 SQEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLM 175

Query: 64  MEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVP 123
            EE +DF  + + +TLA++FP RFL D Q E    V CH ++ +E++++P  S     V 
Sbjct: 176 HEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVS 235

Query: 124 GDLSSFSIKDLLSLPQEAK 143
            DLS F++ DLLSLPQE K
Sbjct: 236 KDLSRFNVNDLLSLPQETK 254

HSP 2 Score: 135.2 bits (339), Expect = 4.4e-28
Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 144 KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTS 203
           KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D+NHIT++E D  +EKE   QRTS
Sbjct: 436 KKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITLKEADSMEEKEGDSQRTS 495

Query: 204 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVT 263
            F RI P VARA VF++LS+ E E +  Q T +  R S F+RL++  +EE+    T   T
Sbjct: 496 AFDRISPHVARAPVFEKLSMTEAERKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTT 555

Query: 264 RPSAFQRLNVPMRKEESAFSAP 286
           +PSAF+RL++  +K      AP
Sbjct: 556 KPSAFERLSITKKKNAQTPLAP 577

The following BLAST results are available for this feature:

BLAST of Spg030801 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031735972.1	1.5e-30	52.80	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031735972.1	8.7e-15	40.60	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737045.1	3.3e-30	52.17	uncharacterized protein LOC116402134 [Cucumis sativus]	[more]
XP_031737045.1	3.7e-05	43.24	uncharacterized protein LOC116402134 [Cucumis sativus]	[more]
XP_031739134.1	8.7e-15	40.60	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]

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BLAST of Spg030801 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DXC7	6.7e-29	48.45	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UMY2	6.7e-29	52.11	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TJZ7	8.8e-29	55.22	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TJZ7	5.4e-02	39.33	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BSG5	8.0e-22	46.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

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BLAST of Spg030801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030801.1	Spg030801.1	mRNA