Spg030751 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030751
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCytochrome C biogenesis protein CcmFC protein
Locationscaffold11: 28887989 .. 28888768 (+)
RNA-Seq ExpressionSpg030751
SyntenySpg030751
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTTCTGACCACACTGAGAGACACGAAAGCGCAGGTAACGCCAGTTGGCTAAGTGGGGTTAAGCATCCCTAGCGGTACGAAAAGAGAGGTCGTGATGATATCATCTACGTCCGTACCGCTCCTCGTGGAGTAGATTCCGCATCCAACCAAGTCTTTGACCAGGGAACGGGAGAATTCCCACTACTGCTGGCAGGCCAGTCGGGCCGTGAGCGCGGTGGGAACGGGCTTCCCAAAAGCCAGCCCGAGGCCGGAGTCAGCATATAATGAAGGGGACGACCCTAATGCTGTGTTGGCAAAGCCAACTTCTTGGGTTGCGGGCAAGAAGAGCGGACATGGGGACTCGAGTCAGGGCGCAACGTAACTAAGAGAGCCATTCCATTTAGGGCGAGCCCGTGTGGTTATGGGGGCGGGCACGAGCGGTCTGGTGTCCAAGCCAATTGGTCAGACGACAACGACTTCACTTATTAGATTAGTATTAGCCGCCTATCCCGAAATCAAATGGGATAATAGAAAGAATGGGATGCGCGGGAGCTATAGGATTGGTTTTGGGGGGGATAAGCTTGCTTCTTCACAAGCTTATCCCCACCCCGACCGGCAGCTGCTGGGTTTCTCCATCTCTCCTAAACTTCCCCCGGTCTTCGACCCGAGCTGTATGAGGCAGAAACTCGTCTCACGTACGGTTTGGAGGCCGAGCCCCACCCCAGCAGTAATGGTGCAGCTTAGGTCAACTAACGCAAAGAAGATATAG

mRNA sequence

ATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTTCTGACCACACTGAGAGACACGAAAGCGCAGATTCCGCATCCAACCAAGTCTTTGACCAGGGAACGGGAGAATTCCCACTACTGCTGGCAGGCCAGTCGGGCCGTGAGCGCGGTGGGAACGGGCTTCCCAAAAGCCAGCCCGAGGCCGGAGTCAGCATATAATGAAGGGGACGACCCTAATGCTGTGTTGGCAAAGCCAACTTCTTGGGTTGCGGGCAAGAAGAGCGGACATGGGGACTCGAGTCAGGGCGCAACATTAGTATTAGCCGCCTATCCCGAAATCAAATGGGATAATAGAAAGAATGGGATGCGCGGGAGCTATAGGATTGGTTTTGGGGGGGATAAGCTTGCTTCTTCACAAGCTTATCCCCACCCCGACCGGCAGCTGCTGGGTTTCTCCATCTCTCCTAAACTTCCCCCGGTCTTCGACCCGAGCTGTATGAGGCAGAAACTCGTCTCACGTACGGTTTGGAGGCCGAGCCCCACCCCAGCAGTAATGGTGCAGCTTAGGTCAACTAACGCAAAGAAGATATAG

Coding sequence (CDS)

ATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTTCTGACCACACTGAGAGACACGAAAGCGCAGATTCCGCATCCAACCAAGTCTTTGACCAGGGAACGGGAGAATTCCCACTACTGCTGGCAGGCCAGTCGGGCCGTGAGCGCGGTGGGAACGGGCTTCCCAAAAGCCAGCCCGAGGCCGGAGTCAGCATATAATGAAGGGGACGACCCTAATGCTGTGTTGGCAAAGCCAACTTCTTGGGTTGCGGGCAAGAAGAGCGGACATGGGGACTCGAGTCAGGGCGCAACATTAGTATTAGCCGCCTATCCCGAAATCAAATGGGATAATAGAAAGAATGGGATGCGCGGGAGCTATAGGATTGGTTTTGGGGGGGATAAGCTTGCTTCTTCACAAGCTTATCCCCACCCCGACCGGCAGCTGCTGGGTTTCTCCATCTCTCCTAAACTTCCCCCGGTCTTCGACCCGAGCTGTATGAGGCAGAAACTCGTCTCACGTACGGTTTGGAGGCCGAGCCCCACCCCAGCAGTAATGGTGCAGCTTAGGTCAACTAACGCAAAGAAGATATAG

Protein sequence

MGVSLAARKHPVLTTLRDTKAQIPHPTKSLTRERENSHYCWQASRAVSAVGTGFPKASPRPESAYNEGDDPNAVLAKPTSWVAGKKSGHGDSSQGATLVLAAYPEIKWDNRKNGMRGSYRIGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQKLVSRTVWRPSPTPAVMVQLRSTNAKKI
Homology
[Close]
BLAST of Spg030751 vs. NCBI nr
Match: VDD65148.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-30
Identity = 98/192 (51.04%), Postives = 107/192 (55.73%), Query Frame = 0 

Query: 1   MGVSLAARKHPVLTTLRDTKAQIPHPTKSLTRERENSHYCWQASRAVSAVGTGFPKASPR 60
           MGVS AARKHPVLTTLRDTKA++     +L  E   S    Q        G G PK  P 
Sbjct: 1   MGVSFAARKHPVLTTLRDTKARV-----TLVGEVALSIPSGQPGH--ERGGNGLPK-KPA 60

Query: 61  PESAYNEGDDPNAVLAKPTSWV---AGKKSGHGDSSQGATLVLAAYPEIKWDNRKNGMRG 120
           P    +       +L   +  +   A KKSG GDS +G            W         
Sbjct: 61  PGRGQHRMKGTALMLCWQSQLLRLRAEKKSGRGDSGRG-----------DW--------- 120

Query: 121 SYRIGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQKLVSRTVWRPSPTPAV 180
                F GDKLASSQAYP PDRQLLG  ISPK PPVF PSCMRQKLV RTV RPSPTPAV
Sbjct: 121 ----FFAGDKLASSQAYPRPDRQLLGLPISPKFPPVFGPSCMRQKLVPRTVRRPSPTPAV 160

Query: 181 MVQLRSTNAKKI 190
           MV+LRSTN KKI
Sbjct: 181 MVRLRSTNTKKI 160

[Close]
BLAST of Spg030751 vs. NCBI nr
Match: VDD65182.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-29
Identity = 96/191 (50.26%), Postives = 106/191 (55.50%), Query Frame = 0 

Query: 1   MGVSLAARKHPVLTTLRDTKAQIPHPTKSLTRERENSHYCWQASRAVSAVGTGFPKASPR 60
           MGVS AARKHPVLTTLRDTKA++     +L  E   S    Q        G G PK  P 
Sbjct: 1   MGVSFAARKHPVLTTLRDTKARV-----TLVGEVALSIPSGQPGH--ERGGNGLPK-KPA 60

Query: 61  PESAYNEGDDPNAVLAKPTSW--VAGKKSGHGDSSQGATLVLAAYPEIKWDNRKNGMRGS 120
           P    +       +L   +    +  +KSG GDS +G            W          
Sbjct: 61  PGRGQHRMKGTALMLCWQSQLLRLRAEKSGRGDSGRG-----------DW---------- 120

Query: 121 YRIGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQKLVSRTVWRPSPTPAVM 180
               F GDKLASSQAYP PDRQLLG  ISPK PPVF PSCMRQKLV RTV RPSPTPAVM
Sbjct: 121 ---FFAGDKLASSQAYPRPDRQLLGLPISPKFPPVFGPSCMRQKLVPRTVRRPSPTPAVM 159

Query: 181 VQLRSTNAKKI 190
           V+LRSTN KKI
Sbjct: 181 VRLRSTNTKKI 159

[Close]
BLAST of Spg030751 vs. NCBI nr
Match: CAA0413853.1 (unnamed protein product [Arabidopsis thaliana] >VYS71822.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-29
Identity = 84/151 (55.63%), Postives = 97/151 (64.24%), Query Frame = 0 

Query: 42  QASRAVSAVGTGFPKASPRPESAYNEGDDPNAVLAKPTSW--VAGKKSGHGDSSQGATLV 101
           +ASRA+SAVGTGFPK+ PR     +       +L   +    +  +KSG GDS +     
Sbjct: 531 RASRAMSAVGTGFPKSQPRAGRGQHRMKGTALMLCWQSQLLRLRTEKSGRGDSGR----- 590

Query: 102 LAAYPEIKWDNRKNGMRGSYRIG-FGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSC 161
                     ++    R +  IG FGGDKLASSQAYP PDRQLLG  ISPKLPPVF PSC
Sbjct: 591 ----------DKIERTRSASAIGFFGGDKLASSQAYPRPDRQLLGLPISPKLPPVFGPSC 650

Query: 162 MRQKLVSRTVWRPSPTPAVMVQLRSTNAKKI 190
           MRQKLV RTV RPSPTPAVMV+LRSTN KKI
Sbjct: 651 MRQKLVPRTVRRPSPTPAVMVRLRSTNTKKI 666

[Close]
BLAST of Spg030751 vs. NCBI nr
Match: CAA0413844.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-29
Identity = 84/151 (55.63%), Postives = 97/151 (64.24%), Query Frame = 0 

Query: 42  QASRAVSAVGTGFPKASPRPESAYNEGDDPNAVLAKPTSW--VAGKKSGHGDSSQGATLV 101
           +ASRA+SAVGTGFPK+ PR     +       +L   +    +  +KSG GDS +     
Sbjct: 571 RASRAMSAVGTGFPKSQPRAGRGQHRMKGTALMLCWQSQLLRLRTEKSGRGDSGR----- 630

Query: 102 LAAYPEIKWDNRKNGMRGSYRIG-FGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSC 161
                     ++    R +  IG FGGDKLASSQAYP PDRQLLG  ISPKLPPVF PSC
Sbjct: 631 ----------DKIERTRSASAIGFFGGDKLASSQAYPRPDRQLLGLPISPKLPPVFGPSC 690

Query: 162 MRQKLVSRTVWRPSPTPAVMVQLRSTNAKKI 190
           MRQKLV RTV RPSPTPAVMV+LRSTN KKI
Sbjct: 691 MRQKLVPRTVRRPSPTPAVMVRLRSTNTKKI 706

[Close]
BLAST of Spg030751 vs. NCBI nr
Match: KAF3592188.1 (hypothetical protein DY000_02021683 [Brassica cretica])

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-28
Identity = 94/189 (49.74%), Postives = 103/189 (54.50%), Query Frame = 0 

Query: 1   MGVSLAARKHPVLTTLRDTKAQIPHPTKSLTRERENSHYCWQASRAVSAVGTGFPKASPR 60
           MGVS AARK PVLTTLRDTKA++      +     N H   +        G G PK  P 
Sbjct: 1   MGVSFAARKQPVLTTLRDTKARVT-LVGEVALSIPNGHPGHERG------GNGLPK-KPA 60

Query: 61  PESAYNEGDDPNAVLAKPTSWVAGKKSGHGDSSQGATLVLAAYPEIKWDNRKNGMRGSYR 120
           P      G       A    W            Q   L L A    +WD+     RG + 
Sbjct: 61  P----GRGQHRMKGTALMLCW------------QSRLLRLRAEKSGRWDSG----RGDW- 120

Query: 121 IGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQKLVSRTVWRPSPTPAVMVQ 180
             F GDKLASSQAYP PD+QLLG  ISPK PPVF PSCMRQKLV RTV RPSPTPAVMV+
Sbjct: 121 -FFTGDKLASSQAYPRPDQQLLGLPISPKFPPVFGPSCMRQKLVPRTVQRPSPTPAVMVR 159

Query: 181 LRSTNAKKI 190
           LRSTN KKI
Sbjct: 181 LRSTNTKKI 159

[Close]
BLAST of Spg030751 vs. ExPASy TrEMBL
Match: A0A6N2KT43 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS135830 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 109/207 (52.66%), Postives = 115/207 (55.56%), Query Frame = 0 

Query: 1   MGVSLAARKHPVLTTLRDTKAQ----------IPHPTKSLTRERENSHYCWQASRAVSAV 60
           MGVS AARKHPVLTTLRDTKAQ          IP  TK     +       Q  R     
Sbjct: 1   MGVSFAARKHPVLTTLRDTKAQVTPVGEVALSIPSGTKREGTGKFPLPLAGQPGR--ERG 60

Query: 61  GTGFPK--ASPRPESAYNEGDDPNAVLAKPTSWV--AGKKSGHGDSSQGAT----LVLAA 120
           G G PK  A  R +         N V A PTSW   AG      D     T    LVL A
Sbjct: 61  GNGLPKKPAPGRGQHRMKGMALTNVVSALPTSWTEWAGTSGLVSDGQTTTTSFIRLVLPA 120

Query: 121 YPEIKWDNRKNGMRGSYRIGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQK 180
           YP +KW NR+N  R  YRIGF G  L   +    PDRQLLG  IS KLPPVF PSCMRQK
Sbjct: 121 YPGMKW-NRRNAKR--YRIGFFGGGLLLHKL--RPDRQLLGLPISSKLPPVFGPSCMRQK 180

Query: 181 LVSRTVWRPSPTPAVMVQLRSTNAKKI 190
           LVSRTV RPSPTPAVMV+LRSTN KKI
Sbjct: 181 LVSRTVRRPSPTPAVMVRLRSTNTKKI 200

[Close]
BLAST of Spg030751 vs. ExPASy TrEMBL
Match: A0A6N2KH66 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS25461 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 109/207 (52.66%), Postives = 115/207 (55.56%), Query Frame = 0 

Query: 1   MGVSLAARKHPVLTTLRDTKAQ----------IPHPTKSLTRERENSHYCWQASRAVSAV 60
           MGVS AARKHPVLTTLRDTKAQ          IP  TK     +       Q  R     
Sbjct: 1   MGVSFAARKHPVLTTLRDTKAQVTPVGEVALSIPSGTKREGTGKFPLPLAGQPGR--ERG 60

Query: 61  GTGFPK--ASPRPESAYNEGDDPNAVLAKPTSWV--AGKKSGHGDSSQGAT----LVLAA 120
           G G PK  A  R +         N V A PTSW   AG      D     T    LVL A
Sbjct: 61  GNGLPKKPAPGRGQHRMKGMALTNVVSALPTSWTEWAGTSGLVSDGQTTTTSFIRLVLPA 120

Query: 121 YPEIKWDNRKNGMRGSYRIGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQK 180
           YP +KW NR+N  R  YRIGF G  L   +    PDRQLLG  IS KLPPVF PSCMRQK
Sbjct: 121 YPGMKW-NRRNAKR--YRIGFFGGGLLLHKL--RPDRQLLGLPISSKLPPVFGPSCMRQK 180

Query: 181 LVSRTVWRPSPTPAVMVQLRSTNAKKI 190
           LVSRTV RPSPTPAVMV+LRSTN KKI
Sbjct: 181 LVSRTVRRPSPTPAVMVRLRSTNTKKI 200

[Close]
BLAST of Spg030751 vs. ExPASy TrEMBL
Match: A0A6N2K3Y5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS136669 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 107/205 (52.20%), Postives = 114/205 (55.61%), Query Frame = 0 

Query: 1   MGVSLAARKHPVLTTLRDTKAQIPH--------PTKSLTRERENSHYCWQASRAVSAVGT 60
           MGVS AARKHPVLTTLRDTKAQ+          P+    RER                G 
Sbjct: 1   MGVSFAARKHPVLTTLRDTKAQVTPVGEVALSIPSGQPGRERG---------------GN 60

Query: 61  GFPK--ASPRPESAYNEGDDPNAVLAKPTSWV--AGKKSGHGDSSQGAT----LVLAAYP 120
           G PK  A  R +         N V A PTSW   AG      D     T    LVL AYP
Sbjct: 61  GLPKKPAPGRGQHRMKGMALTNVVSALPTSWTEWAGTSGLVSDGQTTTTSFIRLVLPAYP 120

Query: 121 EIKWDNRKNGMRGSYRIGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQKLV 180
            +KW NR+N  R  YRIGF G  L   +    PDRQLLG  IS KLPPVF PSCMRQKLV
Sbjct: 121 GMKW-NRRNAKR--YRIGFFGGGLLLHKL--RPDRQLLGLPISSKLPPVFGPSCMRQKLV 180

Query: 181 SRTVWRPSPTPAVMVQLRSTNAKKI 190
           SRTV RPSPTPAVMV+LRSTN KKI
Sbjct: 181 SRTVRRPSPTPAVMVRLRSTNTKKI 185

[Close]
BLAST of Spg030751 vs. ExPASy TrEMBL
Match: A0A6N2KX28 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143491 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 107/205 (52.20%), Postives = 114/205 (55.61%), Query Frame = 0 

Query: 1   MGVSLAARKHPVLTTLRDTKAQIPH--------PTKSLTRERENSHYCWQASRAVSAVGT 60
           MGVS AARKHPVLTTLRDTKAQ+          P+    RER                G 
Sbjct: 1   MGVSFAARKHPVLTTLRDTKAQVTPVGEVALSIPSGQPGRERG---------------GN 60

Query: 61  GFPK--ASPRPESAYNEGDDPNAVLAKPTSWV--AGKKSGHGDSSQGAT----LVLAAYP 120
           G PK  A  R +         N V A PTSW   AG      D     T    LVL AYP
Sbjct: 61  GLPKKPAPGRGQHRMKGMALTNVVSALPTSWTEWAGTSGLVSDGQTTTTSFIRLVLPAYP 120

Query: 121 EIKWDNRKNGMRGSYRIGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQKLV 180
            +KW NR+N  R  YRIGF G  L   +    PDRQLLG  IS KLPPVF PSCMRQKLV
Sbjct: 121 GMKW-NRRNAKR--YRIGFFGGGLLLHKL--RPDRQLLGLPISSKLPPVFGPSCMRQKLV 180

Query: 181 SRTVWRPSPTPAVMVQLRSTNAKKI 190
           SRTV RPSPTPAVMV+LRSTN KKI
Sbjct: 181 SRTVRRPSPTPAVMVRLRSTNTKKI 185

[Close]
BLAST of Spg030751 vs. ExPASy TrEMBL
Match: A0A3P6GFM5 (CcmF_C domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLSC28T60376H PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 98/192 (51.04%), Postives = 107/192 (55.73%), Query Frame = 0 

Query: 1   MGVSLAARKHPVLTTLRDTKAQIPHPTKSLTRERENSHYCWQASRAVSAVGTGFPKASPR 60
           MGVS AARKHPVLTTLRDTKA++     +L  E   S    Q        G G PK  P 
Sbjct: 1   MGVSFAARKHPVLTTLRDTKARV-----TLVGEVALSIPSGQPGH--ERGGNGLPK-KPA 60

Query: 61  PESAYNEGDDPNAVLAKPTSWV---AGKKSGHGDSSQGATLVLAAYPEIKWDNRKNGMRG 120
           P    +       +L   +  +   A KKSG GDS +G            W         
Sbjct: 61  PGRGQHRMKGTALMLCWQSQLLRLRAEKKSGRGDSGRG-----------DW--------- 120

Query: 121 SYRIGFGGDKLASSQAYPHPDRQLLGFSISPKLPPVFDPSCMRQKLVSRTVWRPSPTPAV 180
                F GDKLASSQAYP PDRQLLG  ISPK PPVF PSCMRQKLV RTV RPSPTPAV
Sbjct: 121 ----FFAGDKLASSQAYPRPDRQLLGLPISPKFPPVFGPSCMRQKLVPRTVRRPSPTPAV 160

Query: 181 MVQLRSTNAKKI 190
           MV+LRSTN KKI
Sbjct: 181 MVRLRSTNTKKI 160

The following BLAST results are available for this feature:
BLAST of Spg030751 vs. NCBI nr
Match NameE-valueIdentityDescription
VDD65148.12.8e-3051.04unnamed protein product [Brassica oleracea][more]
VDD65182.11.4e-2950.26unnamed protein product [Brassica oleracea][more]
CAA0413853.12.4e-2955.63unnamed protein product [Arabidopsis thaliana] >VYS71822.1 unnamed protein produ... [more]
CAA0413844.12.4e-2955.63unnamed protein product [Arabidopsis thaliana][more]
KAF3592188.13.5e-2849.74hypothetical protein DY000_02021683 [Brassica cretica][more]
BLAST of Spg030751 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg030751 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6N2KT431.1e-3252.66Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS135830 PE=4 SV=... [more]
A0A6N2KH661.1e-3252.66Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS25461 PE=4 SV=1[more]
A0A6N2K3Y51.5e-3252.20Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS136669 PE=4 SV=... [more]
A0A6N2KX281.5e-3252.20Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS1434... [more]
A0A3P6GFM51.4e-3051.04CcmF_C domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLSC28T60376H ... [more]
BLAST of Spg030751 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030751.1Spg030751.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017004 cytochrome complex assembly
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion