Spg030730 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030730
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUbiquitin thioesterase
Locationscaffold11: 29146607 .. 29147889 (+)
RNA-Seq ExpressionSpg030730
SyntenySpg030730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCACTTTCCGGTTCTTGAATGTATGCTGTATAGTGTTGCTTATTTTCTTGCATCATGGTCTTTAAGAACTTGGCTAAGAAATTGGATGTCGGCCATATAAGGTTTTCAAACATTGAATTTATCGATGGGCTTGTTAAGAGTGTGGAATGAGCATTGTTGGTGGTTTGATATTGATATGCAATATTCTTTTAACAACTGCCATGTTCTATGTTCACTGGCATTCAATTATCCATGGAATAAATGTATAGGTGAACCGTTTGAAGAAGCCCAAATGAAAAATGACCTATCTTTTTAATTTAAGGTTATATGCCCTTTTTCTTACGTCATCATCCTAGCAAAATCACCATTTTACTCTTCCTATGAAAACGTGCATTTTTTCTCTAATCCCGTTTCTTGCTCAATTTTTTTCTTCAACCTTTTCTCTCTCTTTATTTTCTTTCTCTCGAAAGCACACAACGAGAGCGAGAACTGGAGTAGAGAGAGATTGAAGAGAGAAATGAGAGATAGAGCAAAATTGGAGCGCGAGAGATTGGAGAGAGAAAATAGAGAGAGAGAGTAAGAGATTGGAAAAGAGAGTGAGATATTGAAGAGAGAGCGAGAGATTGGAGAGAGAAATTGGAGAGAGAGCGAGCGAGGTTAGAGTAGAGAGATTGGAGAGAGAAATTGGAGAGAGAGTGAAAGATTGGAGAGAGAAATTGGAGAGAGAGCGAGCGAGGTTAGAGTAGAGAATAAAATGATAATTTTACTAGGATGCTGAAGCAAGCAAAATTGCATATAACCTTAAATTGAAAAGGTAGGGCATTTATCATTTCTGCCTATTTAAATGGGTCATTCGTCCAAAAAAACCCATTATCCATATCATATGGTTTGAGAATGATCTAGTTATTAACTTCAAAGATGAGAAGAGATATGCTATCGCTACACATTTATTTATTATCAGATAATGTTTTTACAAACGCTCAGCAGGTGGTCTCCAAGTAGACAAGTTTATGAGCTGGTTGGATCAGTACAGCGAAGTTCCAAGGGGAATTCTTGAATAGGTTTTTCATACCCGATTTCACAAACTGAGGAAACAAAGTGTTCCTATAAAAAAATGCAGAATCAGGAAAATCTTGATACAGATGGGAAAGTGGAGTCTGTGATATCTATTCAAACACCAGAGTACGATAGTTGGGACAATTTTGTTGATGATGATATCATGCAGCAGAAATCTGCAATTTTTGTTCAGGAAGCTGAGAAAGTTCCATTTGTTGGTGACAAGGCAAGTTCACCTATCTAA

mRNA sequence

ATGGGCACTTTCCGGTTCTTGAATAATCAGGAAAATCTTGATACAGATGGGAAAGTGGAGTCTGTGATATCTATTCAAACACCAGAGTACGATAGTTGGGACAATTTTGTTGATGATGATATCATGCAGCAGAAATCTGCAATTTTTGTTCAGGAAGCTGAGAAAGTTCCATTTGTTGGTGACAAGGCAAGTTCACCTATCTAA

Coding sequence (CDS)

ATGGGCACTTTCCGGTTCTTGAATAATCAGGAAAATCTTGATACAGATGGGAAAGTGGAGTCTGTGATATCTATTCAAACACCAGAGTACGATAGTTGGGACAATTTTGTTGATGATGATATCATGCAGCAGAAATCTGCAATTTTTGTTCAGGAAGCTGAGAAAGTTCCATTTGTTGGTGACAAGGCAAGTTCACCTATCTAA

Protein sequence

MGTFRFLNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDKASSPI
Homology
[Close]
BLAST of Spg030730 vs. NCBI nr
Match: XP_023539141.1 (ubiquitin thioesterase otubain-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQTP+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQTPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. NCBI nr
Match: KAG6597694.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQTP+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQTPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. NCBI nr
Match: XP_023539139.1 (ubiquitin thioesterase otubain-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023539140.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQTP+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQTPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. NCBI nr
Match: XP_022932663.1 (ubiquitin thioesterase otubain-like isoform X1 [Cucurbita moschata] >XP_022932664.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita moschata] >XP_022932665.1 ubiquitin thioesterase otubain-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQTP+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQTPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. NCBI nr
Match: XP_022932666.1 (ubiquitin thioesterase otubain-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQTP+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQTPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. ExPASy TrEMBL
Match: A0A6J1F2S9 (Ubiquitin thioesterase OS=Cucurbita moschata OX=3662 GN=LOC111439146 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-19
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQTP+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQTPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. ExPASy TrEMBL
Match: A0A6J1EX09 (Ubiquitin thioesterase OS=Cucurbita moschata OX=3662 GN=LOC111439146 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-19
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQTP+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQTPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. ExPASy TrEMBL
Match: A0A6J1I9A3 (Ubiquitin thioesterase OS=Cucurbita maxima OX=3661 GN=LOC111470817 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQ P+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQAPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. ExPASy TrEMBL
Match: A0A6J1I7Y3 (Ubiquitin thioesterase OS=Cucurbita maxima OX=3661 GN=LOC111470817 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGKVESVISIQ P+YDSWD F DD+IMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKVESVISIQAPDYDSWDTFGDDEIMQQKSAIFVQEAEKVPFVGDK 56

[Close]
BLAST of Spg030730 vs. ExPASy TrEMBL
Match: A0A6J1CXW6 (Ubiquitin thioesterase OS=Momordica charantia OX=3673 GN=LOC111015206 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 7  LNNQENLDTDGKVESVISIQTPEYDSWDNFVDDDIMQQKSAIFVQEAEKVPFVGDK 63
          + NQENLD DGK+E+ ISIQTPE+D+W+NF DDDIMQQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKLETTISIQTPEFDNWENFGDDDIMQQKSAIFVQEAEKVPFVGDK 56

The following BLAST results are available for this feature:
BLAST of Spg030730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023539141.11.2e-1887.50ubiquitin thioesterase otubain-like isoform X2 [Cucurbita pepo subsp. pepo][more]
KAG6597694.11.2e-1887.50OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita ar... [more]
XP_023539139.11.2e-1887.50ubiquitin thioesterase otubain-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_... [more]
XP_022932663.11.2e-1887.50ubiquitin thioesterase otubain-like isoform X1 [Cucurbita moschata] >XP_02293266... [more]
XP_022932666.11.2e-1887.50ubiquitin thioesterase otubain-like isoform X2 [Cucurbita moschata][more]
BLAST of Spg030730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg030730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F2S95.6e-1987.50Ubiquitin thioesterase OS=Cucurbita moschata OX=3662 GN=LOC111439146 PE=3 SV=1[more]
A0A6J1EX095.6e-1987.50Ubiquitin thioesterase OS=Cucurbita moschata OX=3662 GN=LOC111439146 PE=3 SV=1[more]
A0A6J1I9A32.1e-1885.71Ubiquitin thioesterase OS=Cucurbita maxima OX=3661 GN=LOC111470817 PE=3 SV=1[more]
A0A6J1I7Y32.1e-1885.71Ubiquitin thioesterase OS=Cucurbita maxima OX=3661 GN=LOC111470817 PE=3 SV=1[more]
A0A6J1CXW64.7e-1882.14Ubiquitin thioesterase OS=Momordica charantia OX=3673 GN=LOC111015206 PE=3 SV=1[more]
BLAST of Spg030730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030730.1Spg030730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071108 protein K48-linked deubiquitination
cellular_component GO:0005634 nucleus
molecular_function GO:0061815 deubiquitinase, acting on linear ubiquitin
molecular_function GO:1990380 Lys48-specific deubiquitinase activity
molecular_function GO:0019784 NEDD8-specific protease activity
molecular_function GO:0004843 thiol-dependent deubiquitinase
molecular_function GO:0043130 ubiquitin binding