Spg030706 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030706
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCarotenoid cleavage dioxygenase 1
Locationscaffold11: 28888917 .. 28889950 (-)
RNA-Seq ExpressionSpg030706
SyntenySpg030706
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGAAAAGTTCTTTGATTGGAAAGAACGAGACGAGGTATGCAAAGATGAAATTCCTGAGCACGAGTAATGCCTCAATTTGGTGGGATCAAGTCCAAGTAAGGCGTCAGCGGAAAGGCAAAGGGAAGTACATGAGACAAGACAAGATGCAATCGAGGTTGCGAGATAAATTTCGACCCTCCGATTAGACCCAAAGCTTGTTCTAAAGGGTTCACTTCGCTTGTTAGGATAGGGGGGAGAGAAGCGTACAAGAAAGCCCCTGCTCCTAACAAGTTGCGGAGTTCTACCAATTGTTTATTCGCAATGGCTTGAACGAATCCGACGAAGAATCCCTTGCTTGATAGGGCTTGAGGTTCGAAATCCAAGATTAAATCTCAATGCATCAGATGTGGAAAGTGGTCTATCAACTAGCTCTAACTCTAAAGGCCGAGGAAAAGCTAAAAAGAAGGACCACAAGGAGGCACCGAAGGTGATAGGGGATTGACCTCTACCATCGGGCGAGGAAAGAGACCTCTTTTTCCCTTCCCTCAATATATATGGCACGCTTGACTAATAGTTTCAAAAGTCGACGGCTCCATCCTACTCGTTGCCCAGAGTCGTCGACTTGAGCATTGTACAAGTGCTTAAGGCTCCTTGGGGCCGTGGTAACAAACTACGCGAGCCTCCCAACGAAGCCAACAGAAATCCTATCCGAATAAAAAAAATAAAAGGCAGTTTCATTATGGTGGTATACCAGCCGCCCGTTCTGGAACTTCCAGTTCCAATCGATGCATATAGATCCGTAAATGGATTTGTATGTATAGCTACTTCAGTCGTGCTCGTCGTTTCTCGAAATATCTTTTTTCTGGGAACATGGTCAACCAGAAATTATTATGTTCGTGATTCGTCATCCACTGATGTAGAAAATGCTCCAGTTTTCCATTCTCATATGAGGCCGGAAAGTTTATTGGCAACTGGTCGACACGAAGTGATTTATCATGCTCAAAGATGA

mRNA sequence

ATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGAAAAGTTCTTTGATTGGAAAGAACGAGACGAGGTATGCAAAGATGAAATTCCTGAGCACGAGTAATGCCTCAATTTGGTGGGATCAAGTCCAAGGGGGAGAGAAGCGTACAAGAAAGCCCCTGCTCCTAACAAGTTGCGGAGTTCTACCAATTGTTTATTCGCAATGGCTTGAACGAATCCGACGAAGAATCCCTTGCTTGATAGGGCTTGAGGTTCGAAATCCAAGATTAAATCTCAATGCATCAGATGTGGAAAGTGGTCTATCAACTAGCTCTAACTCTAAAGGCCGAGGAAAAGCTAAAAAGAAGGACCACAAGGAGGCACCGAAGTTTCAAAAGTCGACGGCTCCATCCTACTCGTTGCCCAGAGTCGTCGACTTGAGCATTGTACAAGTGCTTAAGGCTCCTTGGGGCCGTGGTAACAAACTACGCGAGCCTCCCAACGAAGCCAACAGAAATCCTATCCGAATAAAAAAAATAAAAGGCAGTTTCATTATGGTGGTATACCAGCCGCCCGTTCTGGAACTTCCAGTTCCAATCGATGCATATAGATCCGTAAATGGATTTGTATGTATAGCTACTTCAGTCGTGCTCGTCGTTTCTCGAAATATCTTTTTTCTGGGAACATGGTCAACCAGAAATTATTATGTTCGTGATTCGTCATCCACTGATGTAGAAAATGCTCCAGTTTTCCATTCTCATATGAGGCCGGAAAGTTTATTGGCAACTGGTCGACACGAAGTGATTTATCATGCTCAAAGATGA

Coding sequence (CDS)

ATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGAAAAGTTCTTTGATTGGAAAGAACGAGACGAGGTATGCAAAGATGAAATTCCTGAGCACGAGTAATGCCTCAATTTGGTGGGATCAAGTCCAAGGGGGAGAGAAGCGTACAAGAAAGCCCCTGCTCCTAACAAGTTGCGGAGTTCTACCAATTGTTTATTCGCAATGGCTTGAACGAATCCGACGAAGAATCCCTTGCTTGATAGGGCTTGAGGTTCGAAATCCAAGATTAAATCTCAATGCATCAGATGTGGAAAGTGGTCTATCAACTAGCTCTAACTCTAAAGGCCGAGGAAAAGCTAAAAAGAAGGACCACAAGGAGGCACCGAAGTTTCAAAAGTCGACGGCTCCATCCTACTCGTTGCCCAGAGTCGTCGACTTGAGCATTGTACAAGTGCTTAAGGCTCCTTGGGGCCGTGGTAACAAACTACGCGAGCCTCCCAACGAAGCCAACAGAAATCCTATCCGAATAAAAAAAATAAAAGGCAGTTTCATTATGGTGGTATACCAGCCGCCCGTTCTGGAACTTCCAGTTCCAATCGATGCATATAGATCCGTAAATGGATTTGTATGTATAGCTACTTCAGTCGTGCTCGTCGTTTCTCGAAATATCTTTTTTCTGGGAACATGGTCAACCAGAAATTATTATGTTCGTGATTCGTCATCCACTGATGTAGAAAATGCTCCAGTTTTCCATTCTCATATGAGGCCGGAAAGTTTATTGGCAACTGGTCGACACGAAGTGATTTATCATGCTCAAAGATGA

Protein sequence

MADCIPRTFLIEKVAWKSSLIGKNETRYAKMKFLSTSNASIWWDQVQGGEKRTRKPLLLTSCGVLPIVYSQWLERIRRRIPCLIGLEVRNPRLNLNASDVESGLSTSSNSKGRGKAKKKDHKEAPKFQKSTAPSYSLPRVVDLSIVQVLKAPWGRGNKLREPPNEANRNPIRIKKIKGSFIMVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLGTWSTRNYYVRDSSSTDVENAPVFHSHMRPESLLATGRHEVIYHAQR
Homology
[Close]
BLAST of Spg030706 vs. NCBI nr
Match: KAF7117295.1 (hypothetical protein RHSIM_RhsimMtG0004300 [Rhododendron simsii])

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-10
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 228 TRNYYVRDSSSTDVENAPVFHSHMRPESLLATGRHEVIYHAQ 270
           ++NYY RDSSSTD ENAPV HSHMRPESLLATGRHE+I+HAQ
Sbjct: 261 SQNYYARDSSSTDAENAPVSHSHMRPESLLATGRHEMIHHAQ 302

[Close]
BLAST of Spg030706 vs. NCBI nr
Match: TYG73547.1 (hypothetical protein ES288_D04G110500v1 [Gossypium darwinii])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-09
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLG 225
           MVVYQPPVLELPVPI+AYRSVN FVCIATSVVLVVSR   F G
Sbjct: 1   MVVYQPPVLELPVPIEAYRSVNRFVCIATSVVLVVSRKYLFSG 43

[Close]
BLAST of Spg030706 vs. NCBI nr
Match: YP_004222387.1 (hypothetical protein BevumaM_p154 [Beta vulgaris subsp. maritima] >YP_004842193.1 hypothetical protein BemaM_p149 [Beta macrocarpa] >CBL52014.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBX24997.1 hypothetical protein [Beta macrocarpa] >CBX33221.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBX33316.1 hypothetical protein [Beta vulgaris subsp. maritima])

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-09
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLGTWSTRNY 232
           MVVYQPPVLELPVPI+AYRSVNGFV IATSVVLVVSR   F G    + +
Sbjct: 1   MVVYQPPVLELPVPIEAYRSVNGFVWIATSVVLVVSRKYLFSGNMLNQKF 50

[Close]
BLAST of Spg030706 vs. NCBI nr
Match: TYH76662.1 (hypothetical protein ES332_D04G101000v1 [Gossypium tomentosum])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLG 225
           MVVYQPPVL+LPVPI+AYRSVN FVCIATSVVLVVSR   F G
Sbjct: 1   MVVYQPPVLKLPVPIEAYRSVNRFVCIATSVVLVVSRKYLFSG 43

[Close]
BLAST of Spg030706 vs. NCBI nr
Match: QGW48285.1 (hypothetical protein [Raphanus sativus] >QGW48507.1 hypothetical protein [Raphanus sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-08
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLG 225
           MVVYQPPVLELPVPI+AYRSVN FVCIATS VLV+SR   F G
Sbjct: 1   MVVYQPPVLELPVPIEAYRSVNRFVCIATSAVLVLSRKYLFSG 43

[Close]
BLAST of Spg030706 vs. ExPASy TrEMBL
Match: A0A5D2CV41 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G110500v1 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-09
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLG 225
           MVVYQPPVLELPVPI+AYRSVN FVCIATSVVLVVSR   F G
Sbjct: 1   MVVYQPPVLELPVPIEAYRSVNRFVCIATSVVLVVSRKYLFSG 43

[Close]
BLAST of Spg030706 vs. ExPASy TrEMBL
Match: E6ZDV5 (Uncharacterized protein orf99g OS=Beta vulgaris subsp. maritima OX=350892 GN=orf99g PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-09
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLGTWSTRNY 232
           MVVYQPPVLELPVPI+AYRSVNGFV IATSVVLVVSR   F G    + +
Sbjct: 1   MVVYQPPVLELPVPIEAYRSVNGFVWIATSVVLVVSRKYLFSGNMLNQKF 50

[Close]
BLAST of Spg030706 vs. ExPASy TrEMBL
Match: G2XM07 (Uncharacterized protein OS=Beta macrocarpa OX=343494 GN=orf99g PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-09
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLGTWSTRNY 232
           MVVYQPPVLELPVPI+AYRSVNGFV IATSVVLVVSR   F G    + +
Sbjct: 1   MVVYQPPVLELPVPIEAYRSVNGFVWIATSVVLVVSRKYLFSGNMLNQKF 50

[Close]
BLAST of Spg030706 vs. ExPASy TrEMBL
Match: A0A5D2LCA8 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G101000v1 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-09
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLG 225
           MVVYQPPVL+LPVPI+AYRSVN FVCIATSVVLVVSR   F G
Sbjct: 1   MVVYQPPVLKLPVPIEAYRSVNRFVCIATSVVLVVSRKYLFSG 43

[Close]
BLAST of Spg030706 vs. ExPASy TrEMBL
Match: A0A650GB44 (Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf81b PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 182 MVVYQPPVLELPVPIDAYRSVNGFVCIATSVVLVVSRNIFFLG 225
           MVVYQPPVLELPVPI+AYRSVN FVCIATS VLV+SR   F G
Sbjct: 1   MVVYQPPVLELPVPIEAYRSVNRFVCIATSAVLVLSRKYLFSG 43

The following BLAST results are available for this feature:
BLAST of Spg030706 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7117295.12.1e-1083.33hypothetical protein RHSIM_RhsimMtG0004300 [Rhododendron simsii][more]
TYG73547.13.9e-0986.05hypothetical protein ES288_D04G110500v1 [Gossypium darwinii][more]
YP_004222387.16.7e-0974.00hypothetical protein BevumaM_p154 [Beta vulgaris subsp. maritima] >YP_004842193.... [more]
TYH76662.11.1e-0883.72hypothetical protein ES332_D04G101000v1 [Gossypium tomentosum][more]
QGW48285.12.6e-0881.40hypothetical protein [Raphanus sativus] >QGW48507.1 hypothetical protein [Raphan... [more]
BLAST of Spg030706 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg030706 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D2CV411.9e-0986.05Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G110500v1 PE=... [more]
E6ZDV53.3e-0974.00Uncharacterized protein orf99g OS=Beta vulgaris subsp. maritima OX=350892 GN=orf... [more]
G2XM073.3e-0974.00Uncharacterized protein OS=Beta macrocarpa OX=343494 GN=orf99g PE=4 SV=1[more]
A0A5D2LCA85.6e-0983.72Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G101000v1 P... [more]
A0A650GB441.2e-0881.40Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf81b PE=4 SV=1[more]
BLAST of Spg030706 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030706.1Spg030706.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion