Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCCGACTCTCAAAGCCAACTATTCAACCTGATTAACTCCTTCATGAACAAACACCGTAGGATAGAAAACCAAACTCCCTACATCAGACACCAGATTAGGCAGTTAGCCTACTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACGAGGATGGATAGGAGATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCTGGTTGGTAGGAACGGAAATCGTAGACGTCGAAAAGATGGTCGTGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAAACGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGTTATGGATACTATACGTTTGTACACATCGTGAAGATTTTACAACGTCCTTCTGACATTTGTAATGCGATGTGGAAACAAAATTGTTTAGGTGCATTGGACGGTACATACGTAAAGGTTCATGTTAGTGTGGCTGATCGACCAAGGTATAAGACGCGTAAGGGTGAGATTGCAACAAGTATTAGGTGTTGTGTCGCCAAAAGGTGAATTCATTTTTGTTATGCCGGGATGGGAAGGTTCGACTGCTGATTCTCGTGTACTCAGAGATACAATATCACGCCCAATGGACTAATAGTGCCGAAGGGTATGGAACCCAGTATTAATGTAAAATAGGATCGCTTACGTCATCCTTAGGTATTAACCATCTTTTCTGAACAGGTTACTACTACCTCTGTGATGTTGGGTACCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGCAATCCACCTACTACCCCAAGAGAGTTCTTTAACAAGAAGTATTCTTTTGCACGTAATGTTATCGAGAGAGCATTCGGTGCTCTGAAAGGATGGTGGGCGATACTTCGGGGGAAGTCATACTACCCTGCTCGGACCCAGTGTCGAATCATAACAGCGTGCTGTTTACTCCACAACCTTATCACCTGGGAGATGGGTTTGGATGTTGGATTGGACGAAGGTGATGTTGGTCGGTCCGAGCCCGTACCTCTCGGTGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGACGCAAAAGCGAGATGACCTAGCGAACAAGATGTTCAACGCGTGGGGGCAACAACATCCCTGATCCAGTTTGGACATACGACTATCTGCTATGTTGTATTTTAAATATTTCTGACATTTCTTGGGTCGTACATTTTTCTACAATCTAAACGATCTATTTCATGTAACTCAGTTAGATTTATGGAAAACCATCGTTGATGTTGTTATTCTACATTATGTTTCTAACTTTGCGTCTGCGATTACTTCATAAATAACTCTTCTACATTATGTCGCCGATAGTGTGACTTGATCAGGATACATACTTACGAAATCTAATGACAAAATACCCTATCTATGTAGACTAATGGAAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGATTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGATGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAAGCGGATGATAAAAGAGAAAATGTCGTCCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTCGGTTGGAATGACGAGTTTAAATGCCTCCAGACTAAGAAGGAGGTCTACGATGCATGGGTGAAGGTACGATCATTAGTCATTCATTGATGTAACCCATGTACACTATCGCTGCTAAAACACTCTTCAATACATGCAGTCACAGTCCAGCACAAAGGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAAGGCGAGTGACTGCACGTGCAATGTTCCAGCGGAACAGGCCGACAGCACCCACGAGGACGACGAGGGTGATCAGAATGTCCAGGCAGACTAG
mRNA sequence
ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCCGACTCTCAAAGCCAACTATTCAACCTGATTAACTCCTTCATGAACAAACACCGTAGGATAGAAAACCAAACTCCCTACATCAGACACCAGATTAGGCAGTTAGCCTACTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACGAGGATGGATAGGAGATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCTGGTTGGTAGGAACGGAAATCGTAGACGTCGAAAAGATGGTCGTGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAAACGGAACCGATCACGGCTTCTTGCCAAGATGGGAGACTAATGGAAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGATTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGATGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAAGCGGATGATAAAAGAGAAAATGTCGTCCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTCGGTTGGAATGACGAGTTTAAATGCCTCCAGACTAAGAAGGAGGTCTACGATGCATGGGTGAAGTCACAGTCCAGCACAAAGGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAAGGCGAGTGACTGCACGTGCAATGTTCCAGCGGAACAGGCCGACAGCACCCACGAGGACGACGAGGGTGATCAGAATGTCCAGGCAGACTAG
Coding sequence (CDS)
ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCCGACTCTCAAAGCCAACTATTCAACCTGATTAACTCCTTCATGAACAAACACCGTAGGATAGAAAACCAAACTCCCTACATCAGACACCAGATTAGGCAGTTAGCCTACTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACGAGGATGGATAGGAGATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCTGGTTGGTAGGAACGGAAATCGTAGACGTCGAAAAGATGGTCGTGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAAACGGAACCGATCACGGCTTCTTGCCAAGATGGGAGACTAATGGAAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGATTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGATGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAAGCGGATGATAAAAGAGAAAATGTCGTCCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTCGGTTGGAATGACGAGTTTAAATGCCTCCAGACTAAGAAGGAGGTCTACGATGCATGGGTGAAGTCACAGTCCAGCACAAAGGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAAGGCGAGTGACTGCACGTGCAATGTTCCAGCGGAACAGGCCGACAGCACCCACGAGGACGACGAGGGTGATCAGAATGTCCAGGCAGACTAG
Protein sequence
MDSITPHELVSVLSIMADSQSQLFNLINSFMNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRESTRMDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYDVLLKKTEPITASCQDGRLMEGADKHPKHIWTRQEEARLVESLVELVHEGGWRWDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQADSTHEDDEGDQNVQAD
Homology
BLAST of Spg030687 vs. NCBI nr
Match:
KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 269.2 bits (687), Expect = 4.6e-68
Identity = 171/485 (35.26%), Postives = 218/485 (44.95%), Query Frame = 0
Query: 7 HELVSVLSIMADSQSQLFNLINSFMNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRE 66
HEL S+++ SQ QL ++ N +RI + RH+IRQLAYFR+IH SDL CR+
Sbjct: 4 HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63
Query: 67 STRMDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGET 126
STRMDRRCFAILC LLRT + L TE+VDVE+MV MFLHI+AHDVKNRVI+R+F RSGET
Sbjct: 64 STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123
Query: 127 VSRHFNATLSVVLRLYDVLLKKTEPITASCQDGR-------------------------- 186
+SRHFN L V+RL+D LLKK +P+ C D R
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRA 183
Query: 187 ------------------------------------------------------------ 246
Sbjct: 184 RYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLV 243
Query: 247 ------------------------------------------------------------ 304
Sbjct: 244 DAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRW 303
BLAST of Spg030687 vs. NCBI nr
Match:
KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 254.6 bits (649), Expect = 1.2e-63
Identity = 125/252 (49.60%), Postives = 169/252 (67.06%), Query Frame = 0
Query: 81 LLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 140
+LRT L T+ VDVE+MV +FLHIVAHDVKNRV RR FARSGETVSRHFN L+VVLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 141 LYDVLLKKTEPITASCQDGR-----LMEGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
L+++LLK+ + +T SC + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 201 WDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGW 260
DNGTF+PGYL ++++++KEK+ I T ++ V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 261 NDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQAD 320
N E KC++ +K V + WVK + + LLNKPFP++ DL VFG+D+A+ C P E
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 321 STHEDDEGDQNV 328
T D E D +
Sbjct: 241 QTARDTEEDDMI 252
BLAST of Spg030687 vs. NCBI nr
Match:
TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])
HSP 1 Score: 254.6 bits (649), Expect = 1.2e-63
Identity = 125/252 (49.60%), Postives = 169/252 (67.06%), Query Frame = 0
Query: 81 LLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 140
+LRT L T+ VDVE+MV +FLHIVAHDVKNRV RR FARSGETVSRHFN L+VVLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 141 LYDVLLKKTEPITASCQDGR-----LMEGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
L+++LLK+ + +T SC + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 201 WDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGW 260
DNGTF+PGYL ++++++KEK+ I T ++ V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 261 NDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQAD 320
N E KC++ +K V + WVK + + LLNKPFP++ DL VFG+D+A+ C P E
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 321 STHEDDEGDQNV 328
T D E D +
Sbjct: 241 QTARDTEEDDMI 252
BLAST of Spg030687 vs. NCBI nr
Match:
TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 247.7 bits (631), Expect = 1.4e-61
Identity = 140/366 (38.25%), Postives = 194/366 (53.01%), Query Frame = 0
Query: 31 MNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRESTRMDRRCFAILCSLLRTTSWLVG 90
MN RRI + H+IRQLAYFR IHES+L C +STRMDR+ F IL LLR S L
Sbjct: 1 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60
Query: 91 TEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYDVLLKKTE 150
TEIVDVE+MV FLH++AHDVKNR+I+R+F RS ETVSR+FN L V+R+Y+ +++
Sbjct: 61 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120
Query: 151 PITASCQDGR--------------------------------------LMEGADKHPKHI 210
T +C D R +++ D +
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180
Query: 211 WTRQE-EARLVESLV----------------ELVH------------------------- 270
+ E +V+S + L H
Sbjct: 181 YVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGG 240
Query: 271 -------------EGGWRWDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKR 304
GGW+ DNGTFRPGYLA+L M+ EK+ C + +T++IDC+++ LK+
Sbjct: 241 GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ 300
BLAST of Spg030687 vs. NCBI nr
Match:
TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 241.5 bits (615), Expect = 1.0e-59
Identity = 132/301 (43.85%), Postives = 171/301 (56.81%), Query Frame = 0
Query: 70 MDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSR 129
MDRRCF ILC++LRT L T+ VDV++MVV+FLHIVAHDVKNRV RR ARSGETVSR
Sbjct: 1 MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60
Query: 130 HFNATLSVVLRLYDVLLKKTEPITASCQ-DG----------------------------- 189
HFNA L+ VLRL+++LLK+ +P+T SC DG
Sbjct: 61 HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120
Query: 190 ------RLMEGADKH----------PKHIWTRQEEARLVESLVELVHEGGWRWDNGTFRP 249
++++ + H KH WT E+ LVE L++LV EGGWR DNGTF+
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180
Query: 250 GYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCLQ 309
GYL +QY+AI+EM+GP CSGFGWN+ KC++
Sbjct: 181 GYL------------------------------KQYTAIAEMMGPACSGFGWNEGQKCIE 240
Query: 310 TKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQADSTHEDDEG 325
+K V+D WVK + +GLLNKPFP++ DL VFG+D+A+ C P E + T D E
Sbjct: 241 VEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEE 271
BLAST of Spg030687 vs. ExPASy TrEMBL
Match:
A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)
HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68
Identity = 171/485 (35.26%), Postives = 218/485 (44.95%), Query Frame = 0
Query: 7 HELVSVLSIMADSQSQLFNLINSFMNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRE 66
HEL S+++ SQ QL ++ N +RI + RH+IRQLAYFR+IH SDL CR+
Sbjct: 4 HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63
Query: 67 STRMDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGET 126
STRMDRRCFAILC LLRT + L TE+VDVE+MV MFLHI+AHDVKNRVI+R+F RSGET
Sbjct: 64 STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123
Query: 127 VSRHFNATLSVVLRLYDVLLKKTEPITASCQDGR-------------------------- 186
+SRHFN L V+RL+D LLKK +P+ C D R
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRA 183
Query: 187 ------------------------------------------------------------ 246
Sbjct: 184 RYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLV 243
Query: 247 ------------------------------------------------------------ 304
Sbjct: 244 DAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRW 303
BLAST of Spg030687 vs. ExPASy TrEMBL
Match:
A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)
HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 125/252 (49.60%), Postives = 169/252 (67.06%), Query Frame = 0
Query: 81 LLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 140
+LRT L T+ VDVE+MV +FLHIVAHDVKNRV RR FARSGETVSRHFN L+VVLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 141 LYDVLLKKTEPITASCQDGR-----LMEGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
L+++LLK+ + +T SC + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 201 WDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGW 260
DNGTF+PGYL ++++++KEK+ I T ++ V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 261 NDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQAD 320
N E KC++ +K V + WVK + + LLNKPFP++ DL VFG+D+A+ C P E
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 321 STHEDDEGDQNV 328
T D E D +
Sbjct: 241 QTARDTEEDDMI 252
BLAST of Spg030687 vs. ExPASy TrEMBL
Match:
A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)
HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 125/252 (49.60%), Postives = 169/252 (67.06%), Query Frame = 0
Query: 81 LLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 140
+LRT L T+ VDVE+MV +FLHIVAHDVKNRV RR FARSGETVSRHFN L+VVLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 141 LYDVLLKKTEPITASCQDGR-----LMEGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
L+++LLK+ + +T SC + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 201 WDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGW 260
DNGTF+PGYL ++++++KEK+ I T ++ V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 261 NDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQAD 320
N E KC++ +K V + WVK + + LLNKPFP++ DL VFG+D+A+ C P E
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 321 STHEDDEGDQNV 328
T D E D +
Sbjct: 241 QTARDTEEDDMI 252
BLAST of Spg030687 vs. ExPASy TrEMBL
Match:
A0A5D3BZA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00580 PE=4 SV=1)
HSP 1 Score: 247.7 bits (631), Expect = 6.9e-62
Identity = 140/366 (38.25%), Postives = 194/366 (53.01%), Query Frame = 0
Query: 31 MNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRESTRMDRRCFAILCSLLRTTSWLVG 90
MN RRI + H+IRQLAYFR IHES+L C +STRMDR+ F IL LLR S L
Sbjct: 1 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60
Query: 91 TEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYDVLLKKTE 150
TEIVDVE+MV FLH++AHDVKNR+I+R+F RS ETVSR+FN L V+R+Y+ +++
Sbjct: 61 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120
Query: 151 PITASCQDGR--------------------------------------LMEGADKHPKHI 210
T +C D R +++ D +
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180
Query: 211 WTRQE-EARLVESLV----------------ELVH------------------------- 270
+ E +V+S + L H
Sbjct: 181 YVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGG 240
Query: 271 -------------EGGWRWDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKR 304
GGW+ DNGTFRPGYLA+L M+ EK+ C + +T++IDC+++ LK+
Sbjct: 241 GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ 300
BLAST of Spg030687 vs. ExPASy TrEMBL
Match:
A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 4.9e-60
Identity = 132/301 (43.85%), Postives = 171/301 (56.81%), Query Frame = 0
Query: 70 MDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSR 129
MDRRCF ILC++LRT L T+ VDV++MVV+FLHIVAHDVKNRV RR ARSGETVSR
Sbjct: 1 MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60
Query: 130 HFNATLSVVLRLYDVLLKKTEPITASCQ-DG----------------------------- 189
HFNA L+ VLRL+++LLK+ +P+T SC DG
Sbjct: 61 HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120
Query: 190 ------RLMEGADKH----------PKHIWTRQEEARLVESLVELVHEGGWRWDNGTFRP 249
++++ + H KH WT E+ LVE L++LV EGGWR DNGTF+
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180
Query: 250 GYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCLQ 309
GYL +QY+AI+EM+GP CSGFGWN+ KC++
Sbjct: 181 GYL------------------------------KQYTAIAEMMGPACSGFGWNEGQKCIE 240
Query: 310 TKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQADSTHEDDEG 325
+K V+D WVK + +GLLNKPFP++ DL VFG+D+A+ C P E + T D E
Sbjct: 241 VEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEE 271
BLAST of Spg030687 vs. TAIR 10
Match:
AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = 0
Query: 54 FRLIHESDLCCRESTRMDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKN 113
+++++ + C E+ RMD+ F LC LL+T L T + +E + +FL I+ H+++
Sbjct: 32 YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91
Query: 114 RVIRRQFARSGETVSRHFNATLSVVLRL 142
R ++ F SGET+SRHFN L+ V+ +
Sbjct: 92 RAVQELFCYSGETISRHFNNVLNAVIAI 119
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0034843.1 | 4.6e-68 | 35.26 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0033487.1 | 1.2e-63 | 49.60 | uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa] | [more] |
TYK26842.1 | 1.2e-63 | 49.60 | uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa] | [more] |
TYK04867.1 | 1.4e-61 | 38.25 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK07921.1 | 1.0e-59 | 43.85 | hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SWD8 | 2.2e-68 | 35.26 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7SW62 | 5.7e-64 | 49.60 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3DTL0 | 5.7e-64 | 49.60 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3BZA2 | 6.9e-62 | 38.25 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3C7T4 | 4.9e-60 | 43.85 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT5G41980.1 | 1.2e-10 | 35.23 | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... | [more] |