Spg030687 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030687
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold11: 27567781 .. 27569968 (+)
RNA-Seq ExpressionSpg030687
SyntenySpg030687
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCCGACTCTCAAAGCCAACTATTCAACCTGATTAACTCCTTCATGAACAAACACCGTAGGATAGAAAACCAAACTCCCTACATCAGACACCAGATTAGGCAGTTAGCCTACTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACGAGGATGGATAGGAGATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCTGGTTGGTAGGAACGGAAATCGTAGACGTCGAAAAGATGGTCGTGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAAACGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGTTATGGATACTATACGTTTGTACACATCGTGAAGATTTTACAACGTCCTTCTGACATTTGTAATGCGATGTGGAAACAAAATTGTTTAGGTGCATTGGACGGTACATACGTAAAGGTTCATGTTAGTGTGGCTGATCGACCAAGGTATAAGACGCGTAAGGGTGAGATTGCAACAAGTATTAGGTGTTGTGTCGCCAAAAGGTGAATTCATTTTTGTTATGCCGGGATGGGAAGGTTCGACTGCTGATTCTCGTGTACTCAGAGATACAATATCACGCCCAATGGACTAATAGTGCCGAAGGGTATGGAACCCAGTATTAATGTAAAATAGGATCGCTTACGTCATCCTTAGGTATTAACCATCTTTTCTGAACAGGTTACTACTACCTCTGTGATGTTGGGTACCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGCAATCCACCTACTACCCCAAGAGAGTTCTTTAACAAGAAGTATTCTTTTGCACGTAATGTTATCGAGAGAGCATTCGGTGCTCTGAAAGGATGGTGGGCGATACTTCGGGGGAAGTCATACTACCCTGCTCGGACCCAGTGTCGAATCATAACAGCGTGCTGTTTACTCCACAACCTTATCACCTGGGAGATGGGTTTGGATGTTGGATTGGACGAAGGTGATGTTGGTCGGTCCGAGCCCGTACCTCTCGGTGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGACGCAAAAGCGAGATGACCTAGCGAACAAGATGTTCAACGCGTGGGGGCAACAACATCCCTGATCCAGTTTGGACATACGACTATCTGCTATGTTGTATTTTAAATATTTCTGACATTTCTTGGGTCGTACATTTTTCTACAATCTAAACGATCTATTTCATGTAACTCAGTTAGATTTATGGAAAACCATCGTTGATGTTGTTATTCTACATTATGTTTCTAACTTTGCGTCTGCGATTACTTCATAAATAACTCTTCTACATTATGTCGCCGATAGTGTGACTTGATCAGGATACATACTTACGAAATCTAATGACAAAATACCCTATCTATGTAGACTAATGGAAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGATTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGATGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAAGCGGATGATAAAAGAGAAAATGTCGTCCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTCGGTTGGAATGACGAGTTTAAATGCCTCCAGACTAAGAAGGAGGTCTACGATGCATGGGTGAAGGTACGATCATTAGTCATTCATTGATGTAACCCATGTACACTATCGCTGCTAAAACACTCTTCAATACATGCAGTCACAGTCCAGCACAAAGGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAAGGCGAGTGACTGCACGTGCAATGTTCCAGCGGAACAGGCCGACAGCACCCACGAGGACGACGAGGGTGATCAGAATGTCCAGGCAGACTAG

mRNA sequence

ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCCGACTCTCAAAGCCAACTATTCAACCTGATTAACTCCTTCATGAACAAACACCGTAGGATAGAAAACCAAACTCCCTACATCAGACACCAGATTAGGCAGTTAGCCTACTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACGAGGATGGATAGGAGATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCTGGTTGGTAGGAACGGAAATCGTAGACGTCGAAAAGATGGTCGTGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAAACGGAACCGATCACGGCTTCTTGCCAAGATGGGAGACTAATGGAAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGATTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGATGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAAGCGGATGATAAAAGAGAAAATGTCGTCCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTCGGTTGGAATGACGAGTTTAAATGCCTCCAGACTAAGAAGGAGGTCTACGATGCATGGGTGAAGTCACAGTCCAGCACAAAGGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAAGGCGAGTGACTGCACGTGCAATGTTCCAGCGGAACAGGCCGACAGCACCCACGAGGACGACGAGGGTGATCAGAATGTCCAGGCAGACTAG

Coding sequence (CDS)

ATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCCGACTCTCAAAGCCAACTATTCAACCTGATTAACTCCTTCATGAACAAACACCGTAGGATAGAAAACCAAACTCCCTACATCAGACACCAGATTAGGCAGTTAGCCTACTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACGAGGATGGATAGGAGATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCTGGTTGGTAGGAACGGAAATCGTAGACGTCGAAAAGATGGTCGTGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAAACGGAACCGATCACGGCTTCTTGCCAAGATGGGAGACTAATGGAAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGATTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGATGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAAGCGGATGATAAAAGAGAAAATGTCGTCCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTCGGTTGGAATGACGAGTTTAAATGCCTCCAGACTAAGAAGGAGGTCTACGATGCATGGGTGAAGTCACAGTCCAGCACAAAGGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTCGTGTTCGGCAAAGACAAGGCGAGTGACTGCACGTGCAATGTTCCAGCGGAACAGGCCGACAGCACCCACGAGGACGACGAGGGTGATCAGAATGTCCAGGCAGACTAG

Protein sequence

MDSITPHELVSVLSIMADSQSQLFNLINSFMNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRESTRMDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYDVLLKKTEPITASCQDGRLMEGADKHPKHIWTRQEEARLVESLVELVHEGGWRWDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQADSTHEDDEGDQNVQAD
Homology
BLAST of Spg030687 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 4.6e-68
Identity = 171/485 (35.26%), Postives = 218/485 (44.95%), Query Frame = 0

Query: 7   HELVSVLSIMADSQSQLFNLINSFMNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRE 66
           HEL S+++    SQ QL  ++    N  +RI +     RH+IRQLAYFR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGET 126
           STRMDRRCFAILC LLRT + L  TE+VDVE+MV MFLHI+AHDVKNRVI+R+F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 127 VSRHFNATLSVVLRLYDVLLKKTEPITASCQDGR-------------------------- 186
           +SRHFN  L  V+RL+D LLKK +P+   C D R                          
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRA 183

Query: 187 ------------------------------------------------------------ 246
                                                                       
Sbjct: 184 RYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLV 243

Query: 247 ------------------------------------------------------------ 304
                                                                       
Sbjct: 244 DAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRW 303

BLAST of Spg030687 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 1.2e-63
Identity = 125/252 (49.60%), Postives = 169/252 (67.06%), Query Frame = 0

Query: 81  LLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 140
           +LRT   L  T+ VDVE+MV +FLHIVAHDVKNRV RR FARSGETVSRHFN  L+VVLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 141 LYDVLLKKTEPITASCQDGR-----LMEGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
           L+++LLK+ + +T SC   +     +     K  KH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 201 WDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGW 260
            DNGTF+PGYL ++++++KEK+    I  T  ++  V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 261 NDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQAD 320
           N E KC++ +K V + WVK   + + LLNKPFP++ DL  VFG+D+A+   C  P E   
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

Query: 321 STHEDDEGDQNV 328
            T  D E D  +
Sbjct: 241 QTARDTEEDDMI 252

BLAST of Spg030687 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 1.2e-63
Identity = 125/252 (49.60%), Postives = 169/252 (67.06%), Query Frame = 0

Query: 81  LLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 140
           +LRT   L  T+ VDVE+MV +FLHIVAHDVKNRV RR FARSGETVSRHFN  L+VVLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 141 LYDVLLKKTEPITASCQDGR-----LMEGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
           L+++LLK+ + +T SC   +     +     K  KH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 201 WDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGW 260
            DNGTF+PGYL ++++++KEK+    I  T  ++  V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 261 NDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQAD 320
           N E KC++ +K V + WVK   + + LLNKPFP++ DL  VFG+D+A+   C  P E   
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

Query: 321 STHEDDEGDQNV 328
            T  D E D  +
Sbjct: 241 QTARDTEEDDMI 252

BLAST of Spg030687 vs. NCBI nr
Match: TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-61
Identity = 140/366 (38.25%), Postives = 194/366 (53.01%), Query Frame = 0

Query: 31  MNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRESTRMDRRCFAILCSLLRTTSWLVG 90
           MN  RRI +      H+IRQLAYFR IHES+L C +STRMDR+ F IL  LLR  S L  
Sbjct: 1   MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60

Query: 91  TEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYDVLLKKTE 150
           TEIVDVE+MV  FLH++AHDVKNR+I+R+F RS ETVSR+FN  L  V+R+Y+  +++  
Sbjct: 61  TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120

Query: 151 PITASCQDGR--------------------------------------LMEGADKHPKHI 210
             T +C D R                                      +++  D     +
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180

Query: 211 WTRQE-EARLVESLV----------------ELVH------------------------- 270
           +     E  +V+S +                 L H                         
Sbjct: 181 YVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGG 240

Query: 271 -------------EGGWRWDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKR 304
                         GGW+ DNGTFRPGYLA+L  M+ EK+  C + +T++IDC+++ LK+
Sbjct: 241 GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ 300

BLAST of Spg030687 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 1.0e-59
Identity = 132/301 (43.85%), Postives = 171/301 (56.81%), Query Frame = 0

Query: 70  MDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSR 129
           MDRRCF ILC++LRT   L  T+ VDV++MVV+FLHIVAHDVKNRV RR  ARSGETVSR
Sbjct: 1   MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60

Query: 130 HFNATLSVVLRLYDVLLKKTEPITASCQ-DG----------------------------- 189
           HFNA L+ VLRL+++LLK+ +P+T SC  DG                             
Sbjct: 61  HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120

Query: 190 ------RLMEGADKH----------PKHIWTRQEEARLVESLVELVHEGGWRWDNGTFRP 249
                 ++++ +  H           KH WT  E+  LVE L++LV EGGWR DNGTF+ 
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180

Query: 250 GYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCLQ 309
           GYL                              +QY+AI+EM+GP CSGFGWN+  KC++
Sbjct: 181 GYL------------------------------KQYTAIAEMMGPACSGFGWNEGQKCIE 240

Query: 310 TKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQADSTHEDDEG 325
            +K V+D WVK   + +GLLNKPFP++ DL  VFG+D+A+   C  P E +  T  D E 
Sbjct: 241 VEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEE 271

BLAST of Spg030687 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68
Identity = 171/485 (35.26%), Postives = 218/485 (44.95%), Query Frame = 0

Query: 7   HELVSVLSIMADSQSQLFNLINSFMNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRE 66
           HEL S+++    SQ QL  ++    N  +RI +     RH+IRQLAYFR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGET 126
           STRMDRRCFAILC LLRT + L  TE+VDVE+MV MFLHI+AHDVKNRVI+R+F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 127 VSRHFNATLSVVLRLYDVLLKKTEPITASCQDGR-------------------------- 186
           +SRHFN  L  V+RL+D LLKK +P+   C D R                          
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRA 183

Query: 187 ------------------------------------------------------------ 246
                                                                       
Sbjct: 184 RYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLV 243

Query: 247 ------------------------------------------------------------ 304
                                                                       
Sbjct: 244 DAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRW 303

BLAST of Spg030687 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 125/252 (49.60%), Postives = 169/252 (67.06%), Query Frame = 0

Query: 81  LLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 140
           +LRT   L  T+ VDVE+MV +FLHIVAHDVKNRV RR FARSGETVSRHFN  L+VVLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 141 LYDVLLKKTEPITASCQDGR-----LMEGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
           L+++LLK+ + +T SC   +     +     K  KH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 201 WDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGW 260
            DNGTF+PGYL ++++++KEK+    I  T  ++  V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 261 NDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQAD 320
           N E KC++ +K V + WVK   + + LLNKPFP++ DL  VFG+D+A+   C  P E   
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

Query: 321 STHEDDEGDQNV 328
            T  D E D  +
Sbjct: 241 QTARDTEEDDMI 252

BLAST of Spg030687 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 125/252 (49.60%), Postives = 169/252 (67.06%), Query Frame = 0

Query: 81  LLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 140
           +LRT   L  T+ VDVE+MV +FLHIVAHDVKNRV RR FARSGETVSRHFN  L+VVLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 141 LYDVLLKKTEPITASCQDGR-----LMEGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
           L+++LLK+ + +T SC   +     +     K  KH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 201 WDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGW 260
            DNGTF+PGYL ++++++KEK+    I  T  ++  V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 261 NDEFKCLQTKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQAD 320
           N E KC++ +K V + WVK   + + LLNKPFP++ DL  VFG+D+A+   C  P E   
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

Query: 321 STHEDDEGDQNV 328
            T  D E D  +
Sbjct: 241 QTARDTEEDDMI 252

BLAST of Spg030687 vs. ExPASy TrEMBL
Match: A0A5D3BZA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00580 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 6.9e-62
Identity = 140/366 (38.25%), Postives = 194/366 (53.01%), Query Frame = 0

Query: 31  MNKHRRIENQTPYIRHQIRQLAYFRLIHESDLCCRESTRMDRRCFAILCSLLRTTSWLVG 90
           MN  RRI +      H+IRQLAYFR IHES+L C +STRMDR+ F IL  LLR  S L  
Sbjct: 1   MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60

Query: 91  TEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYDVLLKKTE 150
           TEIVDVE+MV  FLH++AHDVKNR+I+R+F RS ETVSR+FN  L  V+R+Y+  +++  
Sbjct: 61  TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120

Query: 151 PITASCQDGR--------------------------------------LMEGADKHPKHI 210
             T +C D R                                      +++  D     +
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180

Query: 211 WTRQE-EARLVESLV----------------ELVH------------------------- 270
           +     E  +V+S +                 L H                         
Sbjct: 181 YVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGG 240

Query: 271 -------------EGGWRWDNGTFRPGYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKR 304
                         GGW+ DNGTFRPGYLA+L  M+ EK+  C + +T++IDC+++ LK+
Sbjct: 241 GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ 300

BLAST of Spg030687 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 4.9e-60
Identity = 132/301 (43.85%), Postives = 171/301 (56.81%), Query Frame = 0

Query: 70  MDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKNRVIRRQFARSGETVSR 129
           MDRRCF ILC++LRT   L  T+ VDV++MVV+FLHIVAHDVKNRV RR  ARSGETVSR
Sbjct: 1   MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60

Query: 130 HFNATLSVVLRLYDVLLKKTEPITASCQ-DG----------------------------- 189
           HFNA L+ VLRL+++LLK+ +P+T SC  DG                             
Sbjct: 61  HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120

Query: 190 ------RLMEGADKH----------PKHIWTRQEEARLVESLVELVHEGGWRWDNGTFRP 249
                 ++++ +  H           KH WT  E+  LVE L++LV EGGWR DNGTF+ 
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180

Query: 250 GYLARLKRMIKEKMSSCTIDSTSIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCLQ 309
           GYL                              +QY+AI+EM+GP CSGFGWN+  KC++
Sbjct: 181 GYL------------------------------KQYTAIAEMMGPACSGFGWNEGQKCIE 240

Query: 310 TKKEVYDAWVKSQSSTKGLLNKPFPHYEDLAFVFGKDKASDCTCNVPAEQADSTHEDDEG 325
            +K V+D WVK   + +GLLNKPFP++ DL  VFG+D+A+   C  P E +  T  D E 
Sbjct: 241 VEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEE 271

BLAST of Spg030687 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 54  FRLIHESDLCCRESTRMDRRCFAILCSLLRTTSWLVGTEIVDVEKMVVMFLHIVAHDVKN 113
           +++++  +  C E+ RMD+  F  LC LL+T   L  T  + +E  + +FL I+ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 114 RVIRRQFARSGETVSRHFNATLSVVLRL 142
           R ++  F  SGET+SRHFN  L+ V+ +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAI 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034843.14.6e-6835.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033487.11.2e-6349.60uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa][more]
TYK26842.11.2e-6349.60uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa][more]
TYK04867.11.4e-6138.25retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07921.11.0e-5943.85hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SWD82.2e-6835.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SW625.7e-6449.60Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DTL05.7e-6449.60Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BZA26.9e-6238.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C7T44.9e-6043.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G41980.11.2e-1035.23CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 173..270
e-value: 2.6E-6
score: 28.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 311..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..330
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 167..320
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 167..320

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030687.1Spg030687.1mRNA